Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-01 05:18:54 (20800): Detected: vboxwrapper 26206
2024-10-01 05:18:54 (20800): Detected: BOINC client v8.0.2
2024-10-01 05:18:54 (20800): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2024-10-01 05:18:55 (20800): Successfully copied 'init_data.xml' to the shared directory.
2024-10-01 05:18:55 (20800): Create VM. (boinc_cb86810a7e122433, slot#14)
2024-10-01 05:18:56 (20800): Setting Memory Size for VM. (4200MB)
2024-10-01 05:18:56 (20800): Setting CPU Count for VM. (2)
2024-10-01 05:18:56 (20800): Setting Chipset Options for VM.
2024-10-01 05:18:57 (20800): Setting Graphics Controller Options for VM.
2024-10-01 05:18:57 (20800): Setting Boot Options for VM.
2024-10-01 05:18:57 (20800): Setting Network Configuration for NAT.
2024-10-01 05:18:57 (20800): Enabling VM Network Access.
2024-10-01 05:18:58 (20800): Disabling USB Support for VM.
2024-10-01 05:18:58 (20800): Disabling COM Port Support for VM.
2024-10-01 05:18:58 (20800): Disabling LPT Port Support for VM.
2024-10-01 05:18:58 (20800): Disabling Audio Support for VM.
2024-10-01 05:18:59 (20800): Disabling Clipboard Support for VM.
2024-10-01 05:18:59 (20800): Disabling Drag and Drop Support for VM.
2024-10-01 05:18:59 (20800): Adding storage controller(s) to VM.
2024-10-01 05:19:00 (20800): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-01 05:19:01 (20800): Adding VirtualBox Guest Additions to VM.
2024-10-01 05:19:01 (20800): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-01 05:19:01 (20800): forwarding host port 65031 to guest port 80
2024-10-01 05:19:01 (20800): Enabling remote desktop for VM.
2024-10-01 05:19:02 (20800): Required extension pack not installed, remote desktop not enabled.
2024-10-01 05:19:02 (20800): Enabling shared directory for VM.
2024-10-01 05:19:02 (20800): Starting VM using VBoxManage interface. (boinc_cb86810a7e122433, slot#14)
2024-10-01 05:19:06 (20800): Successfully started VM. (PID = '22372')
2024-10-01 05:19:06 (20800): Reporting VM Process ID to BOINC.
2024-10-01 05:19:06 (20800): Guest Log: BIOS: VirtualBox 6.1.12
2024-10-01 05:19:06 (20800): Guest Log: CPUID EDX: 0x178bfbff
2024-10-01 05:19:06 (20800): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-01 05:19:06 (20800): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-01 05:19:06 (20800): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-01 05:19:06 (20800): Detected: Web Application Enabled (http://localhost:65031)
2024-10-01 05:19:06 (20800): Preference change detected
2024-10-01 05:19:06 (20800): Setting CPU throttle for VM. (40%)
2024-10-01 05:19:06 (20800): Setting checkpoint interval to 18000 seconds. (Higher value of (Preference: 18000 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-01 05:19:08 (20800): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-01 05:19:08 (20800): Guest Log: BIOS: Booting from Hard Disk...
2024-10-01 05:19:14 (20800): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-01 05:19:14 (20800): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-01 05:19:14 (20800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-01 05:19:29 (20800): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-01 05:19:29 (20800): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-01 05:19:49 (20800): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000180 main     Log opened 2024-10-01T05:19:47.527891000Z
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000319 main     OS Product: Linux
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000356 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000375 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000392 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000393 main     Process ID: 1260
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.000393 main     Package type: LINUX_64BITS_GENERIC
2024-10-01 05:19:49 (20800): Guest Log: 00:00:00.001126 main     5.2.32 r132073 started. Verbose level = 0
2024-10-01 05:19:49 (20800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-01 05:19:49 (20800): Guest Log: [INFO] Mounting shared directory
2024-10-01 05:19:49 (20800): Guest Log: [INFO] Checking for init_data.xml
2024-10-01 05:19:59 (20800): Guest Log: 00:00:10.018857 timesync vgsvcTimeSyncWorker: Radical guest time change: -46 788 930 127 000ns (GuestNow=1 727 713 198 601 675 000 ns GuestLast=1 727 759 987 531 802 000 ns fSetTimeLastLoop=true )
2024-10-01 05:20:10 (20800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-01 05:20:10 (20800): Guest Log: [INFO] Detected branch: prod
2024-10-01 05:20:10 (20800): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-01 05:20:10 (20800): Guest Log: Copying input files
2024-10-01 05:20:39 (20800): Guest Log: Copied input files into RunAtlas.
2024-10-01 05:20:40 (20800): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-01 05:20:40 (20800): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-01 05:20:40 (20800): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-01 05:20:40 (20800): Guest Log: Further information can be found at the LHC@home message board.
2024-10-01 05:20:58 (20800): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-01 05:20:58 (20800): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-01 05:20:58 (20800): Guest Log: 2.6.3.0 1558 1 32212 137822 4 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-01 05:21:01 (20800): Guest Log: copied the webapp to /var/www
2024-10-01 05:21:01 (20800): Guest Log: ATHENA_PROC_NUMBER=2
2024-10-01 05:21:01 (20800): Guest Log: ATHENA_CORE_NUMBER=2
2024-10-01 05:21:01 (20800): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-01 05:21:01 (20800): Guest Log:  *** Starting ATLAS job. (PandaID=6347222069 taskID=41081735) ***
2024-10-01 06:59:18 (20800): Status Report: Elapsed Time: '6000.000000'
2024-10-01 06:59:18 (20800): Status Report: CPU Time: '4286.687500'
2024-10-01 08:39:28 (20800): Status Report: Elapsed Time: '12000.000000'
2024-10-01 08:39:28 (20800): Status Report: CPU Time: '9712.812500'
2024-10-01 10:19:41 (20800): Status Report: Elapsed Time: '18000.000000'
2024-10-01 10:19:41 (20800): Status Report: CPU Time: '15142.437500'
2024-10-01 11:59:52 (20800): Status Report: Elapsed Time: '24000.000000'
2024-10-01 11:59:52 (20800): Status Report: CPU Time: '20571.734375'
2024-10-01 12:05:51 (20800): Guest Log:  *** Job finished ***
2024-10-01 12:05:51 (20800): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:42,779 | INFO     | [job] create_data_payload thread has finished
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:43,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:47,209 | INFO     | [data] queue_monitor thread has finished
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:47,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093966915392)>', '<ExcThread(monitor, started 140093310367488)>']
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:47,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:47,342 | INFO     | [monitor] control thread has ended
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,266 | INFO     | all workflow threads have been joined
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,266 | INFO     | end of generic workflow (traces error code: 0)
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,266 | INFO     | traces error code: 0
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,388 [wrapper] ==== pilot stdout END ====
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,390 [wrapper] ==== wrapper stdout RESUME ====
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,399 [wrapper] pilotpid: 5902
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,407 [wrapper] Pilot exit status: 0
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,478 [wrapper] pandaids: 6347222069
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,499 [wrapper] cleanup supervisor_pilot 25092 5903
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,502 [wrapper] Test setup, not cleaning
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,505 [wrapper] ==== wrapper stdout END ====
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,507 [wrapper] ==== wrapper stderr END ====
2024-10-01 12:05:51 (20800): Guest Log: 2024-09-30 23:05:52,513 [wrapper] apfmon messages muted
2024-10-01 12:05:51 (20800): Guest Log:  *** Error codes and diagnostics ***
2024-10-01 12:05:51 (20800): Guest Log:     "exeErrorCode": 0,
2024-10-01 12:05:51 (20800): Guest Log:     "exeErrorDiag": "",
2024-10-01 12:05:51 (20800): Guest Log:     "pilotErrorCode": 0,
2024-10-01 12:05:51 (20800): Guest Log:     "pilotErrorDiag": "",
2024-10-01 12:05:51 (20800): Guest Log:  *** Listing of results directory ***
2024-10-01 12:05:51 (20800): Guest Log: total 161772
2024-10-01 12:05:51 (20800): Guest Log: -rwx------. 1 atlas atlas     33814 Sep 26 11:04 runpilot2-wrapper.sh
2024-10-01 12:05:51 (20800): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Sep 26 13:03 pilot3.tar.gz
2024-10-01 12:05:51 (20800): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Sep 26 13:11 queuedata.json
2024-10-01 12:05:51 (20800): Guest Log: -rwxr-xr-x. 1 atlas atlas      9419 Sep 30 16:20 init_data.xml
2024-10-01 12:05:51 (20800): Guest Log: -rwxr-xr-x. 1 atlas atlas    498193 Sep 30 16:20 input.tar.gz
2024-10-01 12:05:51 (20800): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Sep 30 16:20 start_atlas.sh
2024-10-01 12:05:51 (20800): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 30 16:20 EVNT.41081731._000015.pool.root.1 -> /data/./ATLAS.root_0
2024-10-01 12:05:51 (20800): Guest Log: -rw-r--r--. 1 atlas atlas      2581 Sep 30 16:21 pandaJob.out
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas       424 Sep 30 16:21 setup.sh.local
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas   1011552 Sep 30 16:24 agis_schedconf.cvmfs.json
2024-10-01 12:05:51 (20800): Guest Log: drwx------. 4 atlas atlas      4096 Sep 30 16:24 pilot3
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas 156758482 Sep 30 23:04 HITS.41081735._000937.pool.root.1
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas      1028 Sep 30 23:05 memory_monitor_summary.json
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas        95 Sep 30 23:05 pilot_heartbeat.json
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas   1615815 Sep 30 23:05 agis_ddmendpoints.agis.ALL.json
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas    374362 Sep 30 23:05 log.41081735._000937.job.log.tgz.1
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas      7738 Sep 30 23:05 heartbeat.json
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas      4580 Sep 30 23:05 pilotlog.txt
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas   2180514 Sep 30 23:05 log.41081735._000937.job.log.1
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas       357 Sep 30 23:05 output.list
2024-10-01 12:05:51 (20800): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 30 23:05 runtime_log
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas   2570240 Sep 30 23:05 result.tar.gz
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas       645 Sep 30 23:05 VfYKDmXT1D6n7OlckoGmwREmGgkVDo1bjSoqOlfODm1DrKDmW2nXAo.diag
2024-10-01 12:05:51 (20800): Guest Log: -rw-r--r--. 1 atlas atlas     10922 Sep 30 23:05 runtime_log.err
2024-10-01 12:05:51 (20800): Guest Log: Looking for outputfile HITS.41081735._000937.pool.root.1
2024-10-01 12:05:51 (20800): Guest Log: HITS file was successfully produced
2024-10-01 12:05:51 (20800): Guest Log: -rw-------. 1 atlas atlas 156758482 Sep 30 23:04 /home/atlas/RunAtlas/HITS.41081735._000937.pool.root.1
2024-10-01 12:05:53 (20800): Guest Log: Successfully finished the ATLAS job!
2024-10-01 12:05:53 (20800): Guest Log: Copying the results back to the shared directory!
2024-10-01 12:05:53 (20800): Guest Log:  *** Contents of shared directory: ***
2024-10-01 12:05:53 (20800): Guest Log: total 586360
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root 440564073 Sep 30 16:18 ATLAS.root_0
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root 156758482 Sep 30 23:05 HITS.pool.root.1
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root      9419 Sep 30 16:18 init_data.xml
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root    498193 Sep 26 14:01 input.tar.gz
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root   2570240 Sep 30 23:05 result.tar.gz
2024-10-01 12:05:53 (20800): Guest Log: -rwxrwxrwx. 1 root root     17537 Sep 26 14:01 start_atlas.sh
2024-10-01 12:05:53 (20800): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-01 12:05:53 (20800): VM Completion File Detected.
2024-10-01 12:05:53 (20800): Powering off VM.
2024-10-01 12:05:54 (20800): Successfully stopped VM.
2024-10-01 12:05:54 (20800): Deregistering VM. (boinc_cb86810a7e122433, slot#14)
2024-10-01 12:05:54 (20800): Removing network bandwidth throttle group from VM.
2024-10-01 12:05:55 (20800): Removing VM from VirtualBox.
12:06:00 (20800): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN