Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
23:26:58 (1387970): wrapper (7.7.26015): starting
23:26:58 (1387970): wrapper: running run_atlas (--nthreads 4)
[2024-09-25 23:26:58] Arguments: --nthreads 4
[2024-09-25 23:26:58] Threads: 4
[2024-09-25 23:26:58] Checking for CVMFS
[2024-09-25 23:26:58] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-25 23:26:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-25 23:26:58] Running cvmfs_config stat atlas.cern.ch
[2024-09-25 23:26:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-25 23:26:58] 2.11.4.0 1170754 337 60820 137654 0 56 5142568 6144000 915 130560 0 797035 99.9947 122428 1247 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.202:3128 1
[2024-09-25 23:26:58] CVMFS is ok
[2024-09-25 23:26:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-25 23:26:58] Checking for apptainer binary...
[2024-09-25 23:26:58] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-25 23:26:58] Running /usr/bin/apptainer --version
[2024-09-25 23:26:58] apptainer version 1.3.3
[2024-09-25 23:26:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-25 23:26:58] Ryzen5
[2024-09-25 23:26:58] apptainer works
[2024-09-25 23:26:58] Set ATHENA_PROC_NUMBER=4
[2024-09-25 23:26:58] Set ATHENA_CORE_NUMBER=4
[2024-09-25 23:26:58] Starting ATLAS job with PandaID=6342667411
[2024-09-25 23:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-26 00:47:42]  *** The last 200 lines of the pilot log: ***
[2024-09-26 00:47:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-09-26 00:47:42]  is_tar=False
[2024-09-26 00:47:42]  lfn=log.41081670._000156.job.log.tgz.1
[2024-09-26 00:47:42]  mtime=0
[2024-09-26 00:47:42]  protocol_id=None
[2024-09-26 00:47:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-26 00:47:42]  replicas=None
[2024-09-26 00:47:42]  scope=mc23_13p6TeV
[2024-09-26 00:47:42]  status=None
[2024-09-26 00:47:42]  status_code=0
[2024-09-26 00:47:42]  storage_token=
[2024-09-26 00:47:42]  surl=/var/lib/boinc2/slots/0/PanDA_Pilot-6342667411/log.41081670._000156.job.log.tgz.1
[2024-09-26 00:47:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/b4/log.41081670._000156.job.log.tgz.1
[2024-09-26 00:47:42]  workdir=None
[2024-09-26 00:47:42] ]
[2024-09-26 00:47:42] 2024-09-25 22:47:11,198 | INFO     | transferring file log.41081670._000156.job.log.tgz.1 from /var/lib/boinc2/slots/0/PanDA_Pilot-6342667411/log.41081670._000156.job.log.tgz.1 to /var/lib/boinc2/slot
[2024-09-26 00:47:42] 2024-09-25 22:47:11,198 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc2/slots/0/PanDA_Pilot-6342667411/log.41081670._000156.job.log.tgz.1 /var/lib/boinc2/slots/0/log.41081670._000156.j
[2024-09-26 00:47:42] 2024-09-25 22:47:11,240 | INFO     | adding to output.list: log.41081670._000156.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/b4/log.41081670._000156.job.log.tg
[2024-09-26 00:47:42] 2024-09-25 22:47:11,240 | INFO     | summary of transferred files:
[2024-09-26 00:47:42] 2024-09-25 22:47:11,240 | INFO     |  -- lfn=log.41081670._000156.job.log.tgz.1, status_code=0, status=transferred
[2024-09-26 00:47:42] 2024-09-25 22:47:11,240 | INFO     | stage-out finished correctly
[2024-09-26 00:47:42] 2024-09-25 22:47:11,719 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-26 00:47:42] 2024-09-25 22:47:13,323 | INFO     | monitor loop #378: job 0:6342667411 is in state 'finished'
[2024-09-26 00:47:42] 2024-09-25 22:47:13,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-26 00:47:42] 2024-09-25 22:47:14,399 | INFO     | job 6342667411 has state=finished
[2024-09-26 00:47:42] 2024-09-25 22:47:14,399 | INFO     | preparing for final server update for job 6342667411 in state='finished'
[2024-09-26 00:47:42] 2024-09-25 22:47:14,399 | INFO     | this job has now completed (state=finished)
[2024-09-26 00:47:42] 2024-09-25 22:47:14,399 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-26 00:47:42] 2024-09-25 22:47:14,399 | INFO     | log transfer has been attempted: DONE
[2024-09-26 00:47:42] 2024-09-25 22:47:14,400 | INFO     | job 6342667411 has finished - writing final server update
[2024-09-26 00:47:42] 2024-09-25 22:47:14,400 | INFO     | total number of processed events: 400 (read)
[2024-09-26 00:47:42] 2024-09-25 22:47:14,409 | INFO     | executing command: lscpu
[2024-09-26 00:47:42] 2024-09-25 22:47:14,457 | INFO     | found 8 cores (8 cores per socket, 1 sockets)
[2024-09-26 00:47:42] 2024-09-25 22:47:14,457 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-26 00:47:42] 2024-09-25 22:47:14,530 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-26 00:47:42] 2024-09-25 22:47:15,827 | INFO     | monitor loop #379: job 0:6342667411 is in state 'finished'
[2024-09-26 00:47:42] 2024-09-25 22:47:15,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-26 00:47:42] 2024-09-25 22:47:18,332 | INFO     | monitor loop #380: job 0:6342667411 is in state 'finished'
[2024-09-26 00:47:42] 2024-09-25 22:47:18,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-26 00:47:42] 2024-09-25 22:47:20,835 | INFO     | monitor loop #381: job 0:6342667411 is in state 'finished'
[2024-09-26 00:47:42] 2024-09-25 22:47:20,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,486 | INFO     | CPU arch script returned: x86-64-v3
[2024-09-26 00:47:42] 2024-09-25 22:47:22,487 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6342667411/memory_monitor_summary.json (trf name=prmon)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,487 | INFO     | extracted standard info from prmon json
[2024-09-26 00:47:42] 2024-09-25 22:47:22,488 | INFO     | extracted standard memory fields from prmon json
[2024-09-26 00:47:42] 2024-09-25 22:47:22,488 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-26 00:47:42] 2024-09-25 22:47:22,488 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-26 00:47:42] 2024-09-25 22:47:22,488 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-26 00:47:42] 2024-09-25 22:47:22,489 | INFO     | fitting pss+swap vs Time
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | model: linear, x: [1727299968.0, 1727300029.0, 1727300090.0, 1727300151.0, 1727300212.0, 1727300273.0, 1727300334.0, 1727300395.0, 1727300456.0, 1727300517.0, 1727
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | sum of square deviations: 115715658.0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | sum of deviations: -13034811382.5
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | mean x: 1727302133.5
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | mean y: 2510820.8194444445
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | -- intersect: 194574774418.56293
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | intersect: 194574774418.56293
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | chi2: 0.14291824944984008
[2024-09-26 00:47:42] 2024-09-25 22:47:22,490 | INFO     | -- intersect: 194574774418.56293
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | current memory leak: -112.65 B/s (using 72 data points, chi2=0.14)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | ..............................
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . Timing measurements:
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . get job = 0 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . initial setup = 3 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . payload setup = 8 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . stage-in = 0 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . payload execution = 4767 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . stage-out = 0 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | . log creation = 0 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,491 | INFO     | ..............................
[2024-09-26 00:47:42] 2024-09-25 22:47:22,565 | INFO     | 
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | job summary report
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | --------------------------------------------------
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | PanDA job id: 6342667411
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | task id: 41081670
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | errors: (none)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | pilot state: finished 
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | transexitcode: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | exeerrorcode: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | exeerrordiag: 
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | exitcode: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | exitmsg: OK
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | cpuconsumptiontime: 17772 s
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | nevents: 400
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | neventsw: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | pid: 1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:22,566 | INFO     | pgrp: 1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | corecount: 4
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | event service: False
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | sizes: {0: 2440263, 6: 2440469, 11: 2440497, 4780: 2466557, 4781: 2475575, 4792: 2475689}
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | --------------------------------------------------
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | 
[2024-09-26 00:47:42] 2024-09-25 22:47:22,567 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-26 00:47:42] 2024-09-25 22:47:22,634 | INFO     | job 6342667411 has completed (purged errors)
[2024-09-26 00:47:42] 2024-09-25 22:47:22,635 | INFO     | overall cleanup function is called
[2024-09-26 00:47:42] 2024-09-25 22:47:23,642 | INFO     | --- collectZombieJob: --- 10, [1398170]
[2024-09-26 00:47:42] 2024-09-25 22:47:23,642 | INFO     | zombie collector waiting for pid 1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:23,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-26 00:47:42] 2024-09-25 22:47:23,642 | INFO     | collected zombie processes
[2024-09-26 00:47:42] 2024-09-25 22:47:23,642 | INFO     | will  attempt to kill all subprocesses of pid=1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:23,771 | INFO     | process IDs to be killed: [1398170] (in reverse order)
[2024-09-26 00:47:42] 2024-09-25 22:47:23,813 | WARNING  | found no corresponding commands to process id(s)
[2024-09-26 00:47:42] 2024-09-25 22:47:23,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-26 00:47:42] 2024-09-25 22:47:23,815 | INFO     | did not find any defunct processes belonging to 1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:23,818 | INFO     | did not find any defunct processes belonging to 1398170
[2024-09-26 00:47:42] 2024-09-25 22:47:23,818 | INFO     | ready for new job
[2024-09-26 00:47:42] 2024-09-25 22:47:23,818 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-26 00:47:42] 2024-09-25 22:47:23,819 | INFO     | **************************************
[2024-09-26 00:47:42] 2024-09-25 22:47:23,819 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-26 00:47:42] 2024-09-25 22:47:23,819 | INFO     | **************************************
[2024-09-26 00:47:42] 2024-09-25 22:47:23,819 | INFO     | 
[2024-09-26 00:47:42] 2024-09-25 22:47:23,820 | INFO     | architecture information:
[2024-09-26 00:47:42] 2024-09-25 22:47:23,820 | INFO     | executing command: cat /etc/os-release
[2024-09-26 00:47:42] 2024-09-25 22:47:23,860 | INFO     | cat /etc/os-release:
[2024-09-26 00:47:42] NAME="CentOS Linux"
[2024-09-26 00:47:42] VERSION="7 (Core)"
[2024-09-26 00:47:42] ID="centos"
[2024-09-26 00:47:42] ID_LIKE="rhel fedora"
[2024-09-26 00:47:42] VERSION_ID="7"
[2024-09-26 00:47:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-26 00:47:42] ANSI_COLOR="0;31"
[2024-09-26 00:47:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-26 00:47:42] HOME_URL="https://www.centos.org/"
[2024-09-26 00:47:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-26 00:47:42] 
[2024-09-26 00:47:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-26 00:47:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-26 00:47:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-26 00:47:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-26 00:47:42] 
[2024-09-26 00:47:42] 2024-09-25 22:47:23,861 | INFO     | **************************************
[2024-09-26 00:47:42] 2024-09-25 22:47:24,363 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2024-09-26 00:47:42] 2024-09-25 22:47:24,380 | INFO     | sufficient remaining disk space (391514161152 B)
[2024-09-26 00:47:42] 2024-09-25 22:47:24,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-26 00:47:42] 2024-09-25 22:47:24,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-26 00:47:42] 2024-09-25 22:47:24,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-26 00:47:42] 2024-09-25 22:47:24,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-26 00:47:42] 2024-09-25 22:47:24,381 | INFO     | aborting loop
[2024-09-26 00:47:42] 2024-09-25 22:47:24,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-26 00:47:42] 2024-09-25 22:47:24,497 | INFO     | found 0 job(s) in 20 queues
[2024-09-26 00:47:42] 2024-09-25 22:47:24,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-26 00:47:42] 2024-09-25 22:47:24,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-26 00:47:42] 2024-09-25 22:47:24,847 | INFO     | all data control threads have been joined
[2024-09-26 00:47:42] 2024-09-25 22:47:25,263 | INFO     | all job control threads have been joined
[2024-09-26 00:47:42] 2024-09-25 22:47:25,386 | INFO     | [job] queue monitor thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:25,386 | INFO     | [job] retrieve thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:25,386 | INFO     | [job] job monitor thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:25,839 | INFO     | all payload control threads have been joined
[2024-09-26 00:47:42] 2024-09-25 22:47:25,853 | INFO     | [data] control thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:25,985 | INFO     | [payload] validate_post thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:25,995 | INFO     | [payload] execute_payloads thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,270 | INFO     | [job] control thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,388 | INFO     | [data] copytool_out thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,411 | INFO     | [job] validate thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,438 | INFO     | [job] create_data_payload thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,500 | INFO     | [data] copytool_in thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,551 | INFO     | [payload] validate_pre thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-26 00:47:42] 2024-09-25 22:47:26,844 | INFO     | [payload] control thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:26,965 | INFO     | [payload] failed_post thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:30,781 | INFO     | [data] queue_monitor thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:35,226 | INFO     | job.realtimelogging is not enabled
[2024-09-26 00:47:42] 2024-09-25 22:47:36,231 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-26 00:47:42] 2024-09-25 22:47:36,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407633471296)>', '<ExcThread(monitor, started 140407136560896)>']
[2024-09-26 00:47:42] 2024-09-25 22:47:37,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-26 00:47:42] 2024-09-25 22:47:37,565 | INFO     | [monitor] control thread has ended
[2024-09-26 00:47:42] 2024-09-25 22:47:41,912 | INFO     | all workflow threads have been joined
[2024-09-26 00:47:42] 2024-09-25 22:47:42,023 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-26 00:47:42] 2024-09-25 22:47:42,023 | INFO     | traces error code: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:42,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-26 00:47:42] 2024-09-25 22:47:42,125 [wrapper] ==== pilot stdout END ====
[2024-09-26 00:47:42] 2024-09-25 22:47:42,127 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-26 00:47:42] 2024-09-25 22:47:42,137 [wrapper] pilotpid: 1391669
[2024-09-26 00:47:42] 2024-09-25 22:47:42,138 [wrapper] Pilot exit status: 0
[2024-09-26 00:47:42] 2024-09-25 22:47:42,145 [wrapper] pandaids: 6342667411
[2024-09-26 00:47:42] 2024-09-25 22:47:42,215 [wrapper] cleanup supervisor_pilot 1435103 1391670
[2024-09-26 00:47:42] 2024-09-25 22:47:42,220 [wrapper] Test setup, not cleaning
[2024-09-26 00:47:42] 2024-09-25 22:47:42,230 [wrapper] ==== wrapper stdout END ====
[2024-09-26 00:47:42] 2024-09-25 22:47:42,243 [wrapper] ==== wrapper stderr END ====
[2024-09-26 00:47:42] 2024-09-25 22:47:42,260 [wrapper] apfmon messages muted
[2024-09-26 00:47:42]  *** Error codes and diagnostics ***
[2024-09-26 00:47:42]     "exeErrorCode": 0,
[2024-09-26 00:47:42]     "exeErrorDiag": "",
[2024-09-26 00:47:42]     "pilotErrorCode": 0,
[2024-09-26 00:47:42]     "pilotErrorDiag": "",
[2024-09-26 00:47:42]  *** Listing of results directory ***
[2024-09-26 00:47:42] insgesamt 589780
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc    482533 25. Sep 15:11 pilot3.tar.gz
[2024-09-26 00:47:42] -rwx------ 1 boinc boinc     33814 25. Sep 15:39 runpilot2-wrapper.sh
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc      5655 25. Sep 15:57 queuedata.json
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc       100 25. Sep 23:26 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-26 00:47:42] -rwxr-xr-x 1 boinc boinc      7986 25. Sep 23:26 run_atlas
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc       105 25. Sep 23:26 job.xml
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc 441845023 25. Sep 23:26 EVNT.41081668._000007.pool.root.1
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc      6954 25. Sep 23:26 init_data.xml
[2024-09-26 00:47:42] drwxrwx--x 2 boinc boinc      4096 25. Sep 23:26 shared
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc    496014 25. Sep 23:26 input.tar.gz
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc     17539 25. Sep 23:26 start_atlas.sh
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc         0 25. Sep 23:26 boinc_lockfile
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc      2604 25. Sep 23:26 pandaJob.out
[2024-09-26 00:47:42] -rw------- 1 boinc boinc       461 25. Sep 23:26 setup.sh.local
[2024-09-26 00:47:42] -rw------- 1 boinc boinc   1018505 25. Sep 23:27 agis_schedconf.cvmfs.json
[2024-09-26 00:47:42] -rw------- 1 boinc boinc   1618603 25. Sep 23:27 agis_ddmendpoints.agis.ALL.json
[2024-09-26 00:47:42] drwx------ 4 boinc boinc      4096 25. Sep 23:27 pilot3
[2024-09-26 00:47:42] -rw------- 1 boinc boinc 156835127 26. Sep 00:46 HITS.41081670._000156.pool.root.1
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc       530 26. Sep 00:46 boinc_task_state.xml
[2024-09-26 00:47:42] -rw------- 1 boinc boinc      1015 26. Sep 00:47 memory_monitor_summary.json
[2024-09-26 00:47:42] -rw------- 1 boinc boinc    234865 26. Sep 00:47 log.41081670._000156.job.log.tgz.1
[2024-09-26 00:47:42] -rw------- 1 boinc boinc        95 26. Sep 00:47 pilot_heartbeat.json
[2024-09-26 00:47:42] -rw------- 1 boinc boinc      7629 26. Sep 00:47 heartbeat.json
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc      8192 26. Sep 00:47 boinc_mmap_file
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc        27 26. Sep 00:47 wrapper_checkpoint.txt
[2024-09-26 00:47:42] -rw------- 1 boinc boinc      4289 26. Sep 00:47 pilotlog.txt
[2024-09-26 00:47:42] -rw------- 1 boinc boinc    460899 26. Sep 00:47 log.41081670._000156.job.log.1
[2024-09-26 00:47:42] -rw------- 1 boinc boinc       357 26. Sep 00:47 output.list
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc       620 26. Sep 00:47 runtime_log
[2024-09-26 00:47:42] -rw------- 1 boinc boinc    716800 26. Sep 00:47 result.tar.gz
[2024-09-26 00:47:42] -rw------- 1 boinc boinc       630 26. Sep 00:47 VatLDmiPhD6n7OlckoGmwREmGgkVDo1bjSoqOlfODmfQpKDm6uV04m.diag
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc     11342 26. Sep 00:47 runtime_log.err
[2024-09-26 00:47:42] -rw-r--r-- 1 boinc boinc     21184 26. Sep 00:47 stderr.txt
[2024-09-26 00:47:42] HITS file was successfully produced:
[2024-09-26 00:47:42] -rw------- 1 boinc boinc 156835127 26. Sep 00:46 shared/HITS.pool.root.1
[2024-09-26 00:47:42]  *** Contents of shared directory: ***
[2024-09-26 00:47:42] insgesamt 585868
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc 441845023 25. Sep 23:26 ATLAS.root_0
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc    496014 25. Sep 23:26 input.tar.gz
[2024-09-26 00:47:42] -rw-r--r-- 2 boinc boinc     17539 25. Sep 23:26 start_atlas.sh
[2024-09-26 00:47:42] -rw------- 1 boinc boinc 156835127 26. Sep 00:46 HITS.pool.root.1
[2024-09-26 00:47:42] -rw------- 1 boinc boinc    716800 26. Sep 00:47 result.tar.gz
00:47:43 (1387970): run_atlas exited; CPU time 17754.675180
00:47:43 (1387970): called boinc_finish(0)

</stderr_txt>
]]>

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