Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-23 19:51:08 (398833): Detected: vboxwrapper 26206
2024-09-23 19:51:08 (398833): Detected: BOINC client v8.0.4
2024-09-23 19:51:08 (398833): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-09-23 19:51:08 (398833): Successfully copied 'init_data.xml' to the shared directory.
2024-09-23 19:51:08 (398833): Create VM. (boinc_1b0fdc4d16df1c98, slot#3)
2024-09-23 19:51:09 (398833): Setting Memory Size for VM. (4800MB)
2024-09-23 19:51:09 (398833): Setting CPU Count for VM. (8)
2024-09-23 19:51:09 (398833): Setting Chipset Options for VM.
2024-09-23 19:51:09 (398833): Setting Graphics Controller Options for VM.
2024-09-23 19:51:09 (398833): Setting Boot Options for VM.
2024-09-23 19:51:09 (398833): Setting Network Configuration for NAT.
2024-09-23 19:51:09 (398833): Enabling VM Network Access.
2024-09-23 19:51:09 (398833): Disabling USB Support for VM.
2024-09-23 19:51:09 (398833): Disabling COM Port Support for VM.
2024-09-23 19:51:09 (398833): Disabling LPT Port Support for VM.
2024-09-23 19:51:09 (398833): Disabling Audio Support for VM.
2024-09-23 19:51:09 (398833): Disabling Clipboard Support for VM.
2024-09-23 19:51:09 (398833): Disabling Drag and Drop Support for VM.
2024-09-23 19:51:09 (398833): Adding storage controller(s) to VM.
2024-09-23 19:51:09 (398833): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-23 19:51:10 (398833): Adding VirtualBox Guest Additions to VM.
2024-09-23 19:51:10 (398833): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-23 19:51:10 (398833): forwarding host port 41799 to guest port 80
2024-09-23 19:51:10 (398833): Enabling remote desktop for VM.
2024-09-23 19:51:10 (398833): Enabling shared directory for VM.
2024-09-23 19:51:10 (398833): Starting VM using VBoxManage interface. (boinc_1b0fdc4d16df1c98, slot#3)
2024-09-23 19:51:12 (398833): Successfully started VM. (PID = '399084')
2024-09-23 19:51:12 (398833): Reporting VM Process ID to BOINC.
2024-09-23 19:51:12 (398833): Guest Log: BIOS: VirtualBox 7.0.20
2024-09-23 19:51:12 (398833): Guest Log: CPUID EDX: 0x178bfbff
2024-09-23 19:51:12 (398833): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-09-23 19:51:12 (398833): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-23 19:51:12 (398833): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-23 19:51:12 (398833): Detected: Web Application Enabled (http://localhost:41799)
2024-09-23 19:51:12 (398833): Detected: Remote Desktop Enabled (localhost:36205)
2024-09-23 19:51:12 (398833): Preference change detected
2024-09-23 19:51:12 (398833): Setting CPU throttle for VM. (5%)
2024-09-23 19:51:12 (398833): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-23 19:51:14 (398833): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-23 19:51:14 (398833): Guest Log: BIOS: Booting from Hard Disk...
2024-09-23 19:51:22 (398833): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-23 19:51:22 (398833): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-23 19:51:22 (398833): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-23 19:52:06 (398833): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-23 19:52:06 (398833): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-23 19:53:14 (398833): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000109 main     Log opened 2024-09-23T17:53:13.417472000Z
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000185 main     OS Product: Linux
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000208 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000239 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000240 main     Process ID: 1385
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000240 main     Package type: LINUX_64BITS_GENERIC
2024-09-23 19:53:14 (398833): Guest Log: 00:00:00.000702 main     5.2.32 r132073 started. Verbose level = 0
2024-09-23 19:53:15 (398833): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-23 19:53:15 (398833): Guest Log: [INFO] Mounting shared directory
2024-09-23 19:53:16 (398833): Guest Log: [INFO] Checking for init_data.xml
2024-09-23 19:53:25 (398833): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-23 19:53:25 (398833): Guest Log: [INFO] Detected branch: prod
2024-09-23 19:53:26 (398833): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-23 19:53:26 (398833): Guest Log: Copying input files
2024-09-23 19:53:47 (398833): Guest Log: Copied input files into RunAtlas.
2024-09-23 19:53:48 (398833): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-23 19:53:48 (398833): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-23 19:53:48 (398833): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-23 19:53:48 (398833): Guest Log: Further information can be found at the LHC@home message board.
2024-09-23 19:54:01 (398833): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-23 19:54:03 (398833): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-23 19:54:03 (398833): Guest Log: 2.6.3.0 1665 0 32200 137569 3 1 3117302 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-09-23 19:54:07 (398833): Guest Log: copied the webapp to /var/www
2024-09-23 19:54:07 (398833): Guest Log: ATHENA_PROC_NUMBER=8
2024-09-23 19:54:07 (398833): Guest Log: ATHENA_CORE_NUMBER=8
2024-09-23 19:54:08 (398833): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-23 19:54:08 (398833): Guest Log:  *** Starting ATLAS job. (PandaID=6342111682 taskID=41078623) ***
2024-09-23 21:30:12 (398833): Status Report: Elapsed Time: '6000.000000'
2024-09-23 21:30:12 (398833): Status Report: CPU Time: '1139.080000'
2024-09-23 23:09:12 (398833): Status Report: Elapsed Time: '12000.000000'
2024-09-23 23:09:12 (398833): Status Report: CPU Time: '3418.340000'
2024-09-24 00:48:13 (398833): Status Report: Elapsed Time: '18000.000000'
2024-09-24 00:48:13 (398833): Status Report: CPU Time: '5700.350000'
2024-09-24 02:27:13 (398833): Status Report: Elapsed Time: '24000.000000'
2024-09-24 02:27:13 (398833): Status Report: CPU Time: '7974.070000'
2024-09-24 04:06:13 (398833): Status Report: Elapsed Time: '30000.000000'
2024-09-24 04:06:13 (398833): Status Report: CPU Time: '10243.960000'
2024-09-24 05:45:14 (398833): Status Report: Elapsed Time: '36000.000000'
2024-09-24 05:45:14 (398833): Status Report: CPU Time: '12517.250000'
2024-09-24 07:24:14 (398833): Status Report: Elapsed Time: '42000.000000'
2024-09-24 07:24:14 (398833): Status Report: CPU Time: '14791.750000'
2024-09-24 09:03:14 (398833): Status Report: Elapsed Time: '48000.000000'
2024-09-24 09:03:14 (398833): Status Report: CPU Time: '17066.610000'
2024-09-24 10:37:17 (398833): Guest Log:  *** Job finished ***
2024-09-24 10:37:17 (398833): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:00,976 | INFO     | [job] queue monitor thread has finished
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:01,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:05,139 | INFO     | [data] queue_monitor thread has finished
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:07,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140293963073344)>', '<ExcThread(monitor, started 140293529646848)>']
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:07,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:07,629 | INFO     | [monitor] control thread has ended
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:12,104 | INFO     | all workflow threads have been joined
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:12,104 | INFO     | end of generic workflow (traces error code: 0)
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:12,104 | INFO     | traces error code: 0
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:12,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:13,565 [wrapper] ==== pilot stdout END ====
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:13,569 [wrapper] ==== wrapper stdout RESUME ====
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:13,572 [wrapper] pilotpid: 6066
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:13,576 [wrapper] Pilot exit status: 0
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:13,770 [wrapper] pandaids: 6342111682
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:14,284 [wrapper] cleanup supervisor_pilot  8201 6067
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:14,288 [wrapper] Test setup, not cleaning
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:14,490 [wrapper] ==== wrapper stdout END ====
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:14,493 [wrapper] ==== wrapper stderr END ====
2024-09-24 10:37:17 (398833): Guest Log: 2024-09-24 08:37:14,556 [wrapper] apfmon messages muted
2024-09-24 10:37:17 (398833): Guest Log:  *** Error codes and diagnostics ***
2024-09-24 10:37:17 (398833): Guest Log:     "exeErrorCode": 0,
2024-09-24 10:37:17 (398833): Guest Log:     "exeErrorDiag": "",
2024-09-24 10:37:17 (398833): Guest Log:     "pilotErrorCode": 0,
2024-09-24 10:37:17 (398833): Guest Log:     "pilotErrorDiag": "",
2024-09-24 10:37:17 (398833): Guest Log:  *** Listing of results directory ***
2024-09-24 10:37:17 (398833): Guest Log: total 176104
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 22 06:00 pilot3.tar.gz
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 22 06:03 queuedata.json
2024-09-24 10:37:17 (398833): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 22 06:04 runpilot2-wrapper.sh
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas    495961 Sep 23 17:53 input.tar.gz
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas     17539 Sep 23 17:53 start_atlas.sh
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas      6902 Sep 23 17:53 init_data.xml
2024-09-24 10:37:17 (398833): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 23 17:53 EVNT.41078621._000914.pool.root.1 -> /data/./ATLAS.root_0
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Sep 23 17:54 pandaJob.out
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas       424 Sep 23 17:54 setup.sh.local
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas   1011195 Sep 23 17:57 agis_schedconf.cvmfs.json
2024-09-24 10:37:17 (398833): Guest Log: drwx------. 4 atlas atlas      4096 Sep 23 17:58 pilot3
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas 170452739 Sep 24 08:31 HITS.41078623._026806.pool.root.1
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas      1028 Sep 24 08:35 memory_monitor_summary.json
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 24 08:35 agis_ddmendpoints.agis.ALL.json
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas    508738 Sep 24 08:35 log.41078623._026806.job.log.tgz.1
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas        95 Sep 24 08:36 pilot_heartbeat.json
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas      7741 Sep 24 08:36 heartbeat.json
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas      4398 Sep 24 08:37 pilotlog.txt
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas   2536807 Sep 24 08:37 log.41078623._026806.job.log.1
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas       357 Sep 24 08:37 output.list
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 24 08:37 runtime_log
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas   3061760 Sep 24 08:37 result.tar.gz
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas       649 Sep 24 08:37 sRQODmgsUC6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmbTeKDmE134lm.diag
2024-09-24 10:37:17 (398833): Guest Log: -rw-r--r--. 1 atlas atlas     10929 Sep 24 08:37 runtime_log.err
2024-09-24 10:37:17 (398833): Guest Log: Looking for outputfile HITS.41078623._026806.pool.root.1
2024-09-24 10:37:17 (398833): Guest Log: HITS file was successfully produced
2024-09-24 10:37:17 (398833): Guest Log: -rw-------. 1 atlas atlas 170452739 Sep 24 08:31 /home/atlas/RunAtlas/HITS.41078623._026806.pool.root.1
2024-09-24 10:37:18 (398833): Guest Log: Successfully finished the ATLAS job!
2024-09-24 10:37:18 (398833): Guest Log: Copying the results back to the shared directory!
2024-09-24 10:37:19 (398833): Guest Log:  *** Contents of shared directory: ***
2024-09-24 10:37:19 (398833): Guest Log: total 434544
2024-09-24 10:37:19 (398833): Guest Log: -rw-r--r--. 1 root root 441377678 Sep 23 17:51 ATLAS.root_0
2024-09-24 10:37:19 (398833): Guest Log: -rw-r--r--. 1 root root      6902 Sep 23 17:51 init_data.xml
2024-09-24 10:37:19 (398833): Guest Log: -rw-r--r--. 1 root root    495961 Sep 23 17:51 input.tar.gz
2024-09-24 10:37:19 (398833): Guest Log: -rw-r--r--. 1 root root   3061760 Sep 24 08:37 result.tar.gz
2024-09-24 10:37:19 (398833): Guest Log: -rw-r--r--. 1 root root     17539 Sep 23 17:51 start_atlas.sh
2024-09-24 10:37:19 (398833): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-24 10:37:19 (398833): VM Completion File Detected.
2024-09-24 10:37:19 (398833): Powering off VM.
2024-09-24 10:37:19 (398833): Successfully stopped VM.
2024-09-24 10:37:19 (398833): Deregistering VM. (boinc_1b0fdc4d16df1c98, slot#3)
2024-09-24 10:37:19 (398833): Removing network bandwidth throttle group from VM.
2024-09-24 10:37:19 (398833): Removing VM from VirtualBox.
10:37:24 (398833): called boinc_finish(0)

</stderr_txt>
]]>

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