Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-21 04:46:07 (25004): Detected: vboxwrapper 26206
2024-09-21 04:46:07 (25004): Detected: BOINC client v8.0.2
2024-09-21 04:46:07 (25004): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-09-21 04:46:08 (25004): Successfully copied 'init_data.xml' to the shared directory.
2024-09-21 04:46:08 (25004): Create VM. (boinc_591a7c338015857e, slot#13)
2024-09-21 04:46:09 (25004): Setting Memory Size for VM. (4250MB)
2024-09-21 04:46:09 (25004): Setting CPU Count for VM. (6)
2024-09-21 04:46:09 (25004): Setting Chipset Options for VM.
2024-09-21 04:46:10 (25004): Setting Graphics Controller Options for VM.
2024-09-21 04:46:10 (25004): Setting Boot Options for VM.
2024-09-21 04:46:10 (25004): Setting Network Configuration for NAT.
2024-09-21 04:46:10 (25004): Enabling VM Network Access.
2024-09-21 04:46:11 (25004): Disabling USB Support for VM.
2024-09-21 04:46:11 (25004): Disabling COM Port Support for VM.
2024-09-21 04:46:11 (25004): Disabling LPT Port Support for VM.
2024-09-21 04:46:11 (25004): Disabling Audio Support for VM.
2024-09-21 04:46:12 (25004): Disabling Clipboard Support for VM.
2024-09-21 04:46:12 (25004): Disabling Drag and Drop Support for VM.
2024-09-21 04:46:12 (25004): Adding storage controller(s) to VM.
2024-09-21 04:46:12 (25004): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-21 04:46:13 (25004): Adding VirtualBox Guest Additions to VM.
2024-09-21 04:46:13 (25004): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-21 04:46:13 (25004): forwarding host port 62415 to guest port 80
2024-09-21 04:46:14 (25004): Enabling remote desktop for VM.
2024-09-21 04:46:14 (25004): Enabling shared directory for VM.
2024-09-21 04:46:15 (25004): Starting VM using VBoxManage interface. (boinc_591a7c338015857e, slot#13)
2024-09-21 04:46:21 (25004): Successfully started VM. (PID = '21252')
2024-09-21 04:46:21 (25004): Reporting VM Process ID to BOINC.
2024-09-21 04:46:21 (25004): Guest Log: BIOS: VirtualBox 7.0.14
2024-09-21 04:46:21 (25004): Guest Log: CPUID EDX: 0x178bfbff
2024-09-21 04:46:21 (25004): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-09-21 04:46:21 (25004): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-21 04:46:21 (25004): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-21 04:46:21 (25004): Detected: Web Application Enabled (http://localhost:62415)
2024-09-21 04:46:21 (25004): Detected: Remote Desktop Enabled (localhost:62416)
2024-09-21 04:46:21 (25004): Preference change detected
2024-09-21 04:46:21 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 04:46:21 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 04:46:23 (25004): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-21 04:46:23 (25004): Guest Log: BIOS: Booting from Hard Disk...
2024-09-21 04:46:26 (25004): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-21 04:46:26 (25004): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-21 04:46:26 (25004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-21 04:46:31 (25004): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-21 04:46:31 (25004): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-21 04:46:36 (25004): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000187 main     Log opened 2024-09-21T04:46:33.728754000Z
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000331 main     OS Product: Linux
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000356 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000398 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000419 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000419 main     Process ID: 1325
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.000419 main     Package type: LINUX_64BITS_GENERIC
2024-09-21 04:46:36 (25004): Guest Log: 00:00:00.001247 main     5.2.32 r132073 started. Verbose level = 0
2024-09-21 04:46:36 (25004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-21 04:46:36 (25004): Guest Log: [INFO] Mounting shared directory
2024-09-21 04:46:36 (25004): Guest Log: [INFO] Checking for init_data.xml
2024-09-21 04:46:40 (25004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-21 04:46:40 (25004): Guest Log: [INFO] Detected branch: prod
2024-09-21 04:46:40 (25004): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-21 04:46:40 (25004): Guest Log: Copying input files
2024-09-21 04:46:42 (25004): Guest Log: Copied input files into RunAtlas.
2024-09-21 04:46:42 (25004): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2024-09-21 04:46:46 (25004): Guest Log: 00:00:10.003627 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 914 999 000ns (GuestNow=1 726 886 805 816 574 000 ns GuestLast=1 726 893 993 731 573 000 ns fSetTimeLastLoop=true )
2024-09-21 04:46:51 (25004): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-21 04:46:51 (25004): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-21 04:46:51 (25004): Guest Log: 2.6.3.0 1600 0 29560 137473 4 1 3117302 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2024-09-21 04:46:52 (25004): Guest Log: copied the webapp to /var/www
2024-09-21 04:46:52 (25004): Guest Log: ATHENA_PROC_NUMBER=6
2024-09-21 04:46:52 (25004): Guest Log: ATHENA_CORE_NUMBER=6
2024-09-21 04:46:52 (25004): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-21 04:46:52 (25004): Guest Log:  *** Starting ATLAS job. (PandaID=6340307775 taskID=41078631) ***
2024-09-21 04:54:10 (25004): Preference change detected
2024-09-21 04:54:10 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 04:54:11 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 04:56:24 (25004): Preference change detected
2024-09-21 04:56:24 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 04:56:25 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 05:13:22 (25004): Preference change detected
2024-09-21 05:13:22 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 05:13:22 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 05:16:13 (25004): Preference change detected
2024-09-21 05:16:13 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 05:16:13 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 05:28:47 (25004): Preference change detected
2024-09-21 05:28:47 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 05:28:48 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 05:32:23 (25004): Preference change detected
2024-09-21 05:32:23 (25004): Setting CPU throttle for VM. (100%)
2024-09-21 05:32:23 (25004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-21 05:45:22 (25004): Guest Log:  *** Job finished ***
2024-09-21 05:45:22 (25004): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:12,383 | INFO     | [data] copytool_out thread has finished
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:12,774 | INFO     | [payload] validate_pre thread has finished
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:14,536 | INFO     | [data] queue_monitor thread has finished
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:14,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929900177216)>', '<ExcThread(monitor, started 139928952366848)>']
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:15,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:15,532 | INFO     | [monitor] control thread has ended
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,829 | INFO     | all workflow threads have been joined
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,830 | INFO     | end of generic workflow (traces error code: 0)
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,830 | INFO     | traces error code: 0
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,907 [wrapper] ==== pilot stdout END ====
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,913 [wrapper] ==== wrapper stdout RESUME ====
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,918 [wrapper] pilotpid: 5944
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,936 [wrapper] Pilot exit status: 0
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:19,965 [wrapper] pandaids: 6340307775
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:20,010 [wrapper] cleanup supervisor_pilot 21516 5945
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:20,029 [wrapper] Test setup, not cleaning
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:20,078 [wrapper] ==== wrapper stdout END ====
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:20,098 [wrapper] ==== wrapper stderr END ====
2024-09-21 05:45:22 (25004): Guest Log: 2024-09-21 03:45:20,150 [wrapper] apfmon messages muted
2024-09-21 05:45:22 (25004): Guest Log:  *** Error codes and diagnostics ***
2024-09-21 05:45:22 (25004): Guest Log:     "exeErrorCode": 0,
2024-09-21 05:45:22 (25004): Guest Log:     "exeErrorDiag": "",
2024-09-21 05:45:22 (25004): Guest Log:     "pilotErrorCode": 0,
2024-09-21 05:45:22 (25004): Guest Log:     "pilotErrorDiag": "",
2024-09-21 05:45:22 (25004): Guest Log:  *** Listing of results directory ***
2024-09-21 05:45:22 (25004): Guest Log: total 166920
2024-09-21 05:45:22 (25004): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 20 23:48 pilot3.tar.gz
2024-09-21 05:45:22 (25004): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 21 00:00 runpilot2-wrapper.sh
2024-09-21 05:45:22 (25004): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 21 00:00 queuedata.json
2024-09-21 05:45:22 (25004): Guest Log: -rwxr-xr-x. 1 atlas atlas      9015 Sep 21 02:46 init_data.xml
2024-09-21 05:45:22 (25004): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 21 02:46 start_atlas.sh
2024-09-21 05:45:22 (25004): Guest Log: -rwxr-xr-x. 1 atlas atlas    495951 Sep 21 02:46 input.tar.gz
2024-09-21 05:45:22 (25004): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 21 02:46 EVNT.41078629._000014.pool.root.1 -> /data/./ATLAS.root_0
2024-09-21 05:45:22 (25004): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Sep 21 02:46 pandaJob.out
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas       461 Sep 21 02:47 setup.sh.local
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas   1008793 Sep 21 02:48 agis_schedconf.cvmfs.json
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 21 02:48 agis_ddmendpoints.agis.ALL.json
2024-09-21 05:45:22 (25004): Guest Log: drwx------. 4 atlas atlas      4096 Sep 21 02:48 pilot3
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas 166174864 Sep 21 03:44 HITS.41078631._000339.pool.root.1
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas        95 Sep 21 03:44 pilot_heartbeat.json
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas      1034 Sep 21 03:44 memory_monitor_summary.json
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas    238203 Sep 21 03:44 log.41078631._000339.job.log.tgz.1
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas      7724 Sep 21 03:45 heartbeat.json
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas      4398 Sep 21 03:45 pilotlog.txt
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas    242851 Sep 21 03:45 log.41078631._000339.job.log.1
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas       357 Sep 21 03:45 output.list
2024-09-21 05:45:22 (25004): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 21 03:45 runtime_log
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas    501760 Sep 21 03:45 result.tar.gz
2024-09-21 05:45:22 (25004): Guest Log: -rw-r--r--. 1 atlas atlas     11291 Sep 21 03:45 runtime_log.err
2024-09-21 05:45:22 (25004): Guest Log: -rw-------. 1 atlas atlas       639 Sep 21 03:45 msaMDmOj2B6n7OlckoGmwREmGgkVDo1bjSoqOlfODmCLmKDmsq9BVm.diag
2024-09-21 05:45:22 (25004): Guest Log: Looking for outputfile HITS.41078631._000339.pool.root.1
2024-09-21 05:45:23 (25004): Guest Log: HITS file was successfully produced
2024-09-21 05:45:23 (25004): Guest Log: -rw-------. 1 atlas atlas 166174864 Sep 21 03:44 /home/atlas/RunAtlas/HITS.41078631._000339.pool.root.1
2024-09-21 05:45:23 (25004): Guest Log: Successfully finished the ATLAS job!
2024-09-21 05:45:23 (25004): Guest Log: Copying the results back to the shared directory!
2024-09-21 05:45:23 (25004): Guest Log:  *** Contents of shared directory: ***
2024-09-21 05:45:23 (25004): Guest Log: total 591220
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root 438191445 Sep 21 02:46 ATLAS.root_0
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root 166174864 Sep 21  2024 HITS.pool.root.1
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root      9015 Sep 21 02:46 init_data.xml
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root    495951 Sep 21 02:39 input.tar.gz
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root    501760 Sep 21  2024 result.tar.gz
2024-09-21 05:45:23 (25004): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 21 02:39 start_atlas.sh
2024-09-21 05:45:23 (25004): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-21 05:45:23 (25004): VM Completion File Detected.
2024-09-21 05:45:23 (25004): Powering off VM.
2024-09-21 05:45:24 (25004): Successfully stopped VM.
2024-09-21 05:45:24 (25004): Deregistering VM. (boinc_591a7c338015857e, slot#13)
2024-09-21 05:45:24 (25004): Removing network bandwidth throttle group from VM.
2024-09-21 05:45:24 (25004): Removing VM from VirtualBox.
05:45:29 (25004): called boinc_finish(0)

</stderr_txt>
]]>

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