Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-20 20:40:04 (25136): Detected: vboxwrapper 26206
2024-09-20 20:40:04 (25136): Detected: BOINC client v8.0.2
2024-09-20 20:40:04 (25136): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-09-20 20:40:05 (25136): Successfully copied 'init_data.xml' to the shared directory.
2024-09-20 20:40:05 (25136): Create VM. (boinc_0241b3d42236ce3a, slot#37)
2024-09-20 20:40:06 (25136): Setting Memory Size for VM. (4250MB)
2024-09-20 20:40:06 (25136): Setting CPU Count for VM. (6)
2024-09-20 20:40:06 (25136): Setting Chipset Options for VM.
2024-09-20 20:40:06 (25136): Setting Graphics Controller Options for VM.
2024-09-20 20:40:07 (25136): Setting Boot Options for VM.
2024-09-20 20:40:07 (25136): Setting Network Configuration for NAT.
2024-09-20 20:40:07 (25136): Enabling VM Network Access.
2024-09-20 20:40:07 (25136): Disabling USB Support for VM.
2024-09-20 20:40:08 (25136): Disabling COM Port Support for VM.
2024-09-20 20:40:08 (25136): Disabling LPT Port Support for VM.
2024-09-20 20:40:08 (25136): Disabling Audio Support for VM.
2024-09-20 20:40:08 (25136): Disabling Clipboard Support for VM.
2024-09-20 20:40:09 (25136): Disabling Drag and Drop Support for VM.
2024-09-20 20:40:09 (25136): Adding storage controller(s) to VM.
2024-09-20 20:40:09 (25136): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-20 20:40:10 (25136): Adding VirtualBox Guest Additions to VM.
2024-09-20 20:40:10 (25136): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-20 20:40:10 (25136): forwarding host port 50841 to guest port 80
2024-09-20 20:40:10 (25136): Enabling remote desktop for VM.
2024-09-20 20:40:11 (25136): Enabling shared directory for VM.
2024-09-20 20:40:12 (25136): Starting VM using VBoxManage interface. (boinc_0241b3d42236ce3a, slot#37)
2024-09-20 20:40:18 (25136): Successfully started VM. (PID = '13976')
2024-09-20 20:40:18 (25136): Reporting VM Process ID to BOINC.
2024-09-20 20:40:18 (25136): Guest Log: BIOS: VirtualBox 7.0.14
2024-09-20 20:40:18 (25136): Guest Log: CPUID EDX: 0x178bfbff
2024-09-20 20:40:18 (25136): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-09-20 20:40:18 (25136): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-20 20:40:18 (25136): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-20 20:40:18 (25136): Detected: Web Application Enabled (http://localhost:50841)
2024-09-20 20:40:18 (25136): Detected: Remote Desktop Enabled (localhost:50843)
2024-09-20 20:40:18 (25136): Preference change detected
2024-09-20 20:40:18 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 20:40:18 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 20:40:20 (25136): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-20 20:40:20 (25136): Guest Log: BIOS: Booting from Hard Disk...
2024-09-20 20:40:23 (25136): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-20 20:40:23 (25136): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-20 20:40:23 (25136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-20 20:40:27 (25136): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-20 20:40:27 (25136): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-20 20:40:27 (25136): Preference change detected
2024-09-20 20:40:27 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 20:40:27 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 20:40:32 (25136): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000113 main     Log opened 2024-09-20T20:40:29.916796000Z
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000191 main     OS Product: Linux
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000213 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000232 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000250 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000250 main     Process ID: 1326
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.000250 main     Package type: LINUX_64BITS_GENERIC
2024-09-20 20:40:32 (25136): Guest Log: 00:00:00.001196 main     5.2.32 r132073 started. Verbose level = 0
2024-09-20 20:40:32 (25136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-20 20:40:32 (25136): Guest Log: [INFO] Mounting shared directory
2024-09-20 20:40:32 (25136): Guest Log: [INFO] Checking for init_data.xml
2024-09-20 20:40:36 (25136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-20 20:40:36 (25136): Guest Log: [INFO] Detected branch: prod
2024-09-20 20:40:36 (25136): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-20 20:40:36 (25136): Guest Log: Copying input files
2024-09-20 20:40:38 (25136): Guest Log: Copied input files into RunAtlas.
2024-09-20 20:40:38 (25136): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2024-09-20 20:40:42 (25136): Guest Log: 00:00:10.004225 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 231 059 000ns (GuestNow=1 726 857 641 687 906 000 ns GuestLast=1 726 864 829 918 965 000 ns fSetTimeLastLoop=true )
2024-09-20 20:40:50 (25136): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-20 20:40:50 (25136): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-20 20:40:50 (25136): Guest Log: 2.6.3.0 1602 0 31596 137462 4 1 3117302 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2024-09-20 20:40:51 (25136): Guest Log: copied the webapp to /var/www
2024-09-20 20:40:51 (25136): Guest Log: ATHENA_PROC_NUMBER=6
2024-09-20 20:40:51 (25136): Guest Log: ATHENA_CORE_NUMBER=6
2024-09-20 20:40:51 (25136): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-20 20:40:51 (25136): Guest Log:  *** Starting ATLAS job. (PandaID=6340263624 taskID=41078623) ***
2024-09-20 20:42:35 (25136): Preference change detected
2024-09-20 20:42:35 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 20:42:35 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 21:02:05 (25136): Preference change detected
2024-09-20 21:02:05 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 21:02:05 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 21:32:09 (25136): Preference change detected
2024-09-20 21:32:09 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 21:32:11 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 21:40:45 (25136): Preference change detected
2024-09-20 21:40:45 (25136): Setting CPU throttle for VM. (100%)
2024-09-20 21:40:46 (25136): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 21:44:38 (25136): Guest Log:  *** Job finished ***
2024-09-20 21:44:38 (25136): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:26,838 | INFO     | [data] queue_monitor thread has finished
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:29,477 | INFO     | job.realtimelogging is not enabled
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:30,479 | INFO     | [payload] run_realtimelog thread has finished
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:30,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265120655168)>', '<ExcThread(monitor, started 140264538617600)>']
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:31,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:31,665 | INFO     | [monitor] control thread has ended
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,141 | INFO     | all workflow threads have been joined
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,141 | INFO     | end of generic workflow (traces error code: 0)
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,141 | INFO     | traces error code: 0
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,141 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,211 [wrapper] ==== pilot stdout END ====
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,216 [wrapper] ==== wrapper stdout RESUME ====
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,221 [wrapper] pilotpid: 5963
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,225 [wrapper] Pilot exit status: 0
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,246 [wrapper] pandaids: 6340263624
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,275 [wrapper] cleanup supervisor_pilot 31207 5964
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,280 [wrapper] Test setup, not cleaning
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,285 [wrapper] ==== wrapper stdout END ====
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,291 [wrapper] ==== wrapper stderr END ====
2024-09-20 21:44:38 (25136): Guest Log: 2024-09-20 19:44:36,300 [wrapper] apfmon messages muted
2024-09-20 21:44:38 (25136): Guest Log:  *** Error codes and diagnostics ***
2024-09-20 21:44:38 (25136): Guest Log:     "exeErrorCode": 0,
2024-09-20 21:44:38 (25136): Guest Log:     "exeErrorDiag": "",
2024-09-20 21:44:38 (25136): Guest Log:     "pilotErrorCode": 0,
2024-09-20 21:44:38 (25136): Guest Log:     "pilotErrorDiag": "",
2024-09-20 21:44:38 (25136): Guest Log:  *** Listing of results directory ***
2024-09-20 21:44:38 (25136): Guest Log: total 164888
2024-09-20 21:44:38 (25136): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 20 17:21 pilot3.tar.gz
2024-09-20 21:44:38 (25136): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 20 17:39 runpilot2-wrapper.sh
2024-09-20 21:44:38 (25136): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 20 17:40 queuedata.json
2024-09-20 21:44:38 (25136): Guest Log: -rwxr-xr-x. 1 atlas atlas      9015 Sep 20 18:40 init_data.xml
2024-09-20 21:44:38 (25136): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 20 18:40 start_atlas.sh
2024-09-20 21:44:38 (25136): Guest Log: -rwxr-xr-x. 1 atlas atlas    495966 Sep 20 18:40 input.tar.gz
2024-09-20 21:44:38 (25136): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 20 18:40 EVNT.41078621._000496.pool.root.1 -> /data/./ATLAS.root_0
2024-09-20 21:44:38 (25136): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Sep 20 18:40 pandaJob.out
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas       461 Sep 20 18:41 setup.sh.local
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas   1010675 Sep 20 18:43 agis_schedconf.cvmfs.json
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 20 18:43 agis_ddmendpoints.agis.ALL.json
2024-09-20 21:44:38 (25136): Guest Log: drwx------. 4 atlas atlas      4096 Sep 20 18:43 pilot3
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas        95 Sep 20 19:43 pilot_heartbeat.json
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas 164042222 Sep 20 19:43 HITS.41078623._012845.pool.root.1
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas      1033 Sep 20 19:44 memory_monitor_summary.json
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas    248203 Sep 20 19:44 log.41078623._012845.job.log.tgz.1
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas      7730 Sep 20 19:44 heartbeat.json
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas      4470 Sep 20 19:44 pilotlog.txt
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas    261010 Sep 20 19:44 log.41078623._012845.job.log.1
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas       357 Sep 20 19:44 output.list
2024-09-20 21:44:38 (25136): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 20 19:44 runtime_log
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas    532480 Sep 20 19:44 result.tar.gz
2024-09-20 21:44:38 (25136): Guest Log: -rw-r--r--. 1 atlas atlas     11291 Sep 20 19:44 runtime_log.err
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas       640 Sep 20 19:44 NaoLDmRmwB6n9Rq4apOajLDm4fhM0noT9bVorHsSDmlCSKDm4dAxQm.diag
2024-09-20 21:44:38 (25136): Guest Log: Looking for outputfile HITS.41078623._012845.pool.root.1
2024-09-20 21:44:38 (25136): Guest Log: HITS file was successfully produced
2024-09-20 21:44:38 (25136): Guest Log: -rw-------. 1 atlas atlas 164042222 Sep 20 19:43 /home/atlas/RunAtlas/HITS.41078623._012845.pool.root.1
2024-09-20 21:44:39 (25136): Guest Log: Successfully finished the ATLAS job!
2024-09-20 21:44:39 (25136): Guest Log: Copying the results back to the shared directory!
2024-09-20 21:44:39 (25136): Guest Log:  *** Contents of shared directory: ***
2024-09-20 21:44:39 (25136): Guest Log: total 590468
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root 439525491 Sep 20 18:40 ATLAS.root_0
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root 164042222 Sep 20  2024 HITS.pool.root.1
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root      9015 Sep 20 18:40 init_data.xml
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root    495966 Sep 20 18:34 input.tar.gz
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root    532480 Sep 20  2024 result.tar.gz
2024-09-20 21:44:39 (25136): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 20 18:34 start_atlas.sh
2024-09-20 21:44:39 (25136): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-20 21:44:39 (25136): VM Completion File Detected.
2024-09-20 21:44:39 (25136): Powering off VM.
2024-09-20 21:44:40 (25136): Successfully stopped VM.
2024-09-20 21:44:40 (25136): Deregistering VM. (boinc_0241b3d42236ce3a, slot#37)
2024-09-20 21:44:40 (25136): Removing network bandwidth throttle group from VM.
2024-09-20 21:44:40 (25136): Removing VM from VirtualBox.
21:44:45 (25136): called boinc_finish(0)

</stderr_txt>
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