Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:19:04 (16073): wrapper (7.7.26015): starting
04:19:04 (16073): wrapper: running run_atlas (--nthreads 8)
[2024-06-30 04:19:04] Arguments: --nthreads 8
[2024-06-30 04:19:04] Threads: 8
[2024-06-30 04:19:04] Checking for CVMFS
[2024-06-30 04:19:04] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-30 04:19:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-30 04:19:04] Running cvmfs_config stat atlas.cern.ch
[2024-06-30 04:19:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-30 04:19:04] 2.11.2.0 19246 5657 147344 134456 1 92 15281539 18432000 5386 130560 0 21511915 98.548 61552131 46760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-30 04:19:04] CVMFS is ok
[2024-06-30 04:19:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-30 04:19:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-30 04:19:04] Further information can be found at the LHC@home message board.
[2024-06-30 04:19:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-30 04:19:04] Checking for apptainer binary...
[2024-06-30 04:19:04] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-30 04:19:04] Running /usr/bin/apptainer --version
[2024-06-30 04:19:04] apptainer version 1.3.1-1.el7
[2024-06-30 04:19:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-30 04:19:05] c-212-2.aglt2.org
[2024-06-30 04:19:05] apptainer works
[2024-06-30 04:19:05] Set ATHENA_PROC_NUMBER=8
[2024-06-30 04:19:05] Set ATHENA_CORE_NUMBER=8
[2024-06-30 04:19:05] Starting ATLAS job with PandaID=6249335508
[2024-06-30 04:19:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-30 05:12:08]  *** The last 200 lines of the pilot log: ***
[2024-06-30 05:12:08]  domain=
[2024-06-30 05:12:08]  filesize=160872
[2024-06-30 05:12:08]  filetype=log
[2024-06-30 05:12:08]  guid=baf4d4fc-39b3-4625-a1be-6340895a6880
[2024-06-30 05:12:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-30 05:12:08]  is_tar=False
[2024-06-30 05:12:08]  lfn=baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz
[2024-06-30 05:12:08]  mtime=0
[2024-06-30 05:12:08]  protocol_id=None
[2024-06-30 05:12:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-30 05:12:08]  replicas=None
[2024-06-30 05:12:08]  scope=hc_test
[2024-06-30 05:12:08]  status=None
[2024-06-30 05:12:08]  status_code=0
[2024-06-30 05:12:08]  storage_token=
[2024-06-30 05:12:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6249335508/baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz
[2024-06-30 05:12:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/0a/ed/baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz
[2024-06-30 05:12:08]  workdir=None
[2024-06-30 05:12:08] ]
[2024-06-30 05:12:08] 2024-06-30 09:11:38,676 | INFO     | transferring file baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz from /tmp/boinchome/slots/0/PanDA_Pilot-6249335508/baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_
[2024-06-30 05:12:08] 2024-06-30 09:11:38,676 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6249335508/baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz /tmp/boinchome/slots/0/ba
[2024-06-30 05:12:08] 2024-06-30 09:11:38,695 | INFO     | adding to output.list: baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/0a/ed/baafe1bd-3fd1-
[2024-06-30 05:12:08] 2024-06-30 09:11:38,696 | INFO     | summary of transferred files:
[2024-06-30 05:12:08] 2024-06-30 09:11:38,696 | INFO     |  -- lfn=baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz, status_code=0, status=transferred
[2024-06-30 05:12:08] 2024-06-30 09:11:38,696 | INFO     | stage-out finished correctly
[2024-06-30 05:12:08] 2024-06-30 09:11:40,044 | WARNING  | process 28625 is no longer using CPU - aborting
[2024-06-30 05:12:08] 2024-06-30 09:11:41,316 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-30 05:12:08] 2024-06-30 09:11:42,549 | INFO     | monitor loop #248: job 0:6249335508 is in state 'finished'
[2024-06-30 05:12:08] 2024-06-30 09:11:42,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-30 05:12:08] 2024-06-30 09:11:43,185 | INFO     | job 6249335508 has state=finished
[2024-06-30 05:12:08] 2024-06-30 09:11:43,185 | INFO     | preparing for final server update for job 6249335508 in state='finished'
[2024-06-30 05:12:08] 2024-06-30 09:11:43,186 | INFO     | this job has now completed (state=finished)
[2024-06-30 05:12:08] 2024-06-30 09:11:43,186 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-30 05:12:08] 2024-06-30 09:11:43,187 | INFO     | job 6249335508 has finished - writing final server update
[2024-06-30 05:12:08] 2024-06-30 09:11:43,187 | INFO     | total number of processed events: 8 (read)
[2024-06-30 05:12:08] 2024-06-30 09:11:43,191 | INFO     | executing command: lscpu
[2024-06-30 05:12:08] 2024-06-30 09:11:43,229 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-30 05:12:08] 2024-06-30 09:11:43,230 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-30 05:12:08] 2024-06-30 09:11:43,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-30 05:12:08] 2024-06-30 09:11:45,052 | INFO     | monitor loop #249: job 0:6249335508 is in state 'finished'
[2024-06-30 05:12:08] 2024-06-30 09:11:45,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,501 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-30 05:12:08] 2024-06-30 09:11:47,501 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6249335508/memory_monitor_summary.json (trf name=prmon)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,502 | INFO     | extracted standard info from prmon json
[2024-06-30 05:12:08] 2024-06-30 09:11:47,502 | INFO     | extracted standard memory fields from prmon json
[2024-06-30 05:12:08] 2024-06-30 09:11:47,502 | WARNING  | GPU info not found in prmon json
[2024-06-30 05:12:08] 2024-06-30 09:11:47,502 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-30 05:12:08] 2024-06-30 09:11:47,502 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-30 05:12:08] 2024-06-30 09:11:47,503 | INFO     | fitting pss+swap vs Time
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | model: linear, x: [1719735886.0, 1719735947.0, 1719736008.0, 1719736069.0, 1719736130.0, 1719736191.0, 1719736252.0, 1719736313.0, 1719736374.0, 1719736435.0, 1719
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | sum of square deviations: 28242390.0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | sum of deviations: 13046797973.999998
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | mean x: 1719737228.0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | mean y: 1597830.5333333334
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | -- intersect: -794444770981.836
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | intersect: -794444770981.836
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | chi2: 0.8854179018665175
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | -- intersect: -794444770981.836
[2024-06-30 05:12:08] 2024-06-30 09:11:47,504 | INFO     | current memory leak: 461.96 B/s (using 45 data points, chi2=0.89)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | ..............................
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . Timing measurements:
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . get job = 0 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . initial setup = 1 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . payload setup = 6 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . stage-in = 0 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . payload execution = 3118 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . stage-out = 0 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | . log creation = 0 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,505 | INFO     | ..............................
[2024-06-30 05:12:08] 2024-06-30 09:11:47,572 | INFO     | 
[2024-06-30 05:12:08] 2024-06-30 09:11:47,572 | INFO     | job summary report
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | --------------------------------------------------
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | PanDA job id: 6249335508
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | task id: NULL
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | errors: (none)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | pilot state: finished 
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | transexitcode: 0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | exeerrorcode: 0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | exeerrordiag: 
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | exitcode: 0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | exitmsg: OK
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | cpuconsumptiontime: 492 s
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | nevents: 8
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | neventsw: 0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,573 | INFO     | pid: 28625
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | pgrp: 28625
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | corecount: 8
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | event service: False
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | sizes: {0: 2386427, 1: 2386626, 5: 2386832, 11: 2386888, 3128: 2412139, 3129: 2421189, 3132: 2421373, 3138: 2421543}
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | --------------------------------------------------
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | 
[2024-06-30 05:12:08] 2024-06-30 09:11:47,574 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,597 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | job 6249335508 has completed (purged errors)
[2024-06-30 05:12:08] 2024-06-30 09:11:47,598 | INFO     | overall cleanup function is called
[2024-06-30 05:12:08] 2024-06-30 09:11:48,604 | INFO     | --- collectZombieJob: --- 10, [28625]
[2024-06-30 05:12:08] 2024-06-30 09:11:48,604 | INFO     | zombie collector waiting for pid 28625
[2024-06-30 05:12:08] 2024-06-30 09:11:48,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-30 05:12:08] 2024-06-30 09:11:49,609 | INFO     | collected zombie processes
[2024-06-30 05:12:08] 2024-06-30 09:11:49,609 | INFO     | will now attempt to kill all subprocesses of pid=28625
[2024-06-30 05:12:08] 2024-06-30 09:11:49,789 | INFO     | process IDs to be killed: [28625] (in reverse order)
[2024-06-30 05:12:08] 2024-06-30 09:11:49,889 | WARNING  | found no corresponding commands to process id(s)
[2024-06-30 05:12:08] 2024-06-30 09:11:49,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-30 05:12:08] 2024-06-30 09:11:49,899 | INFO     | did not find any defunct processes belonging to 28625
[2024-06-30 05:12:08] 2024-06-30 09:11:49,907 | INFO     | did not find any defunct processes belonging to 28625
[2024-06-30 05:12:08] 2024-06-30 09:11:49,907 | INFO     | ready for new job
[2024-06-30 05:12:08] 2024-06-30 09:11:49,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-30 05:12:08] 2024-06-30 09:11:49,908 | INFO     | *************************************
[2024-06-30 05:12:08] 2024-06-30 09:11:49,909 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-30 05:12:08] 2024-06-30 09:11:49,909 | INFO     | *************************************
[2024-06-30 05:12:08] 2024-06-30 09:11:49,909 | INFO     | 
[2024-06-30 05:12:08] 2024-06-30 09:11:49,912 | INFO     | architecture information:
[2024-06-30 05:12:08] 2024-06-30 09:11:49,913 | INFO     | executing command: cat /etc/os-release
[2024-06-30 05:12:08] 2024-06-30 09:11:49,926 | INFO     | cat /etc/os-release:
[2024-06-30 05:12:08] NAME="CentOS Linux"
[2024-06-30 05:12:08] VERSION="7 (Core)"
[2024-06-30 05:12:08] ID="centos"
[2024-06-30 05:12:08] ID_LIKE="rhel fedora"
[2024-06-30 05:12:08] VERSION_ID="7"
[2024-06-30 05:12:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-30 05:12:08] ANSI_COLOR="0;31"
[2024-06-30 05:12:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-30 05:12:08] HOME_URL="https://www.centos.org/"
[2024-06-30 05:12:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-30 05:12:08] 
[2024-06-30 05:12:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-30 05:12:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-30 05:12:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-30 05:12:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-30 05:12:08] 
[2024-06-30 05:12:08] 2024-06-30 09:11:49,926 | INFO     | *************************************
[2024-06-30 05:12:08] 2024-06-30 09:11:50,428 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2024-06-30 05:12:08] 2024-06-30 09:11:50,444 | INFO     | sufficient remaining disk space (107110989824 B)
[2024-06-30 05:12:08] 2024-06-30 09:11:50,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-30 05:12:08] 2024-06-30 09:11:50,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-30 05:12:08] 2024-06-30 09:11:50,816 | INFO     | found 0 job(s) in 20 queues
[2024-06-30 05:12:08] 2024-06-30 09:11:50,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-30 05:12:08] 2024-06-30 09:11:50,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-30 05:12:08] 2024-06-30 09:11:51,030 | INFO     | all data control threads have been joined
[2024-06-30 05:12:08] 2024-06-30 09:11:51,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-30 05:12:08] 2024-06-30 09:11:51,067 | INFO     | aborting loop
[2024-06-30 05:12:08] 2024-06-30 09:11:51,451 | INFO     | [job] retrieve thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:51,540 | INFO     | [job] validate thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:51,543 | INFO     | [job] create_data_payload thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:51,605 | INFO     | all job control threads have been joined
[2024-06-30 05:12:08] 2024-06-30 09:11:51,633 | INFO     | [payload] validate_pre thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:51,771 | INFO     | [payload] execute_payloads thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:51,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-30 05:12:08] 2024-06-30 09:11:51,818 | INFO     | all payload control threads have been joined
[2024-06-30 05:12:08] 2024-06-30 09:11:51,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-30 05:12:08] 2024-06-30 09:11:52,036 | INFO     | [data] control thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,071 | INFO     | [job] job monitor thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,266 | INFO     | [payload] failed_post thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-30 05:12:08] 2024-06-30 09:11:52,609 | INFO     | [job] control thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,668 | INFO     | [data] copytool_in thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,823 | INFO     | [payload] control thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:52,944 | INFO     | [payload] validate_post thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:53,589 | INFO     | [job] queue monitor thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:53,781 | INFO     | [data] copytool_out thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:11:55,906 | INFO     | [data] queue_monitor thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:12:00,533 | INFO     | job.realtimelogging is not enabled
[2024-06-30 05:12:08] 2024-06-30 09:12:01,539 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-30 05:12:08] 2024-06-30 09:12:03,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623912830784)>', '<ExcThread(monitor, started 139623330207488)>']
[2024-06-30 05:12:08] 2024-06-30 09:12:03,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-30 05:12:08] 2024-06-30 09:12:03,881 | INFO     | [monitor] control thread has ended
[2024-06-30 05:12:08] 2024-06-30 09:12:08,030 | INFO     | all workflow threads have been joined
[2024-06-30 05:12:08] 2024-06-30 09:12:08,030 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-30 05:12:08] 2024-06-30 09:12:08,031 | INFO     | traces error code: 0
[2024-06-30 05:12:08] 2024-06-30 09:12:08,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-30 05:12:08] 2024-06-30 09:12:08,143 [wrapper] ==== pilot stdout END ====
[2024-06-30 05:12:08] 2024-06-30 09:12:08,180 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-30 05:12:08] 2024-06-30 09:12:08,182 [wrapper] pilotpid: 20308
[2024-06-30 05:12:08] 2024-06-30 09:12:08,184 [wrapper] Pilot exit status: 0
[2024-06-30 05:12:08] 2024-06-30 09:12:08,192 [wrapper] pandaids: 6249335508
[2024-06-30 05:12:08] 2024-06-30 09:12:08,264 [wrapper] cleanup supervisor_pilot 95759 20309
[2024-06-30 05:12:08] 2024-06-30 09:12:08,302 [wrapper] Test setup, not cleaning
[2024-06-30 05:12:08] 2024-06-30 09:12:08,304 [wrapper] ==== wrapper stdout END ====
[2024-06-30 05:12:08] 2024-06-30 09:12:08,314 [wrapper] ==== wrapper stderr END ====
[2024-06-30 05:12:08] 2024-06-30 09:12:08,354 [wrapper] apfmon messages muted
[2024-06-30 05:12:08]  *** Error codes and diagnostics ***
[2024-06-30 05:12:08]     "exeErrorCode": 0,
[2024-06-30 05:12:08]     "exeErrorDiag": "",
[2024-06-30 05:12:08]     "pilotErrorCode": 0,
[2024-06-30 05:12:08]     "pilotErrorDiag": "",
[2024-06-30 05:12:08]  *** Listing of results directory ***
[2024-06-30 05:12:08] total 142752
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas      4409 Jun 30 04:16 queuedata.json
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas    469766 Jun 30 04:16 pilot3.tar.gz
[2024-06-30 05:12:08] -rwx------ 1 boincer umatlas     32220 Jun 30 04:18 runpilot2-wrapper.sh
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas       100 Jun 30 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-30 05:12:08] -rwxr-xr-x 1 boincer umatlas      7986 Jun 30 04:19 run_atlas
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas       105 Jun 30 04:19 job.xml
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas 138105876 Jun 30 04:19 EVNT.29070483._000454.pool.root.1
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas     17656 Jun 30 04:19 start_atlas.sh
[2024-06-30 05:12:08] drwxrwx--x 2 boincer umatlas      4096 Jun 30 04:19 shared
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas    482419 Jun 30 04:19 input.tar.gz
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas         0 Jun 30 04:19 boinc_lockfile
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas      2684 Jun 30 04:19 pandaJob.out
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas       467 Jun 30 04:19 setup.sh.local
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   1032177 Jun 30 04:19 agis_schedconf.cvmfs.json
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas         0 Jun 30 04:19 agis_ddmendpoints.agis.ALL.json
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   1321378 Jun 30 04:19 cric_ddmendpoints.json
[2024-06-30 05:12:08] drwx------ 4 boincer umatlas      4096 Jun 30 04:19 pilot3
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas      6385 Jun 30 05:09 init_data.xml
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas        95 Jun 30 05:11 pilot_heartbeat.json
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas       528 Jun 30 05:11 boinc_task_state.xml
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   1780764 Jun 30 05:11 output.1.baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.pool.root
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas      1031 Jun 30 05:11 memory_monitor_summary.json
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas    160872 Jun 30 05:11 baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log.tgz
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas      7884 Jun 30 05:11 heartbeat.json
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas        25 Jun 30 05:12 wrapper_checkpoint.txt
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas      4284 Jun 30 05:12 pilotlog.txt
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas    324991 Jun 30 05:12 baafe1bd-3fd1-4acc-a9fc-2bf0bc027d65_77739.1.job.log
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas      8192 Jun 30 05:12 boinc_mmap_file
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas       464 Jun 30 05:12 output.list
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas       748 Jun 30 05:12 runtime_log
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   2283520 Jun 30 05:12 result.tar.gz
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas       651 Jun 30 05:12 VLHODmkw4h5n7Olcko1bjSoqABFKDmABFKDmOtvXDmJEsKDmqC1PHm.diag
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas     12412 Jun 30 05:12 runtime_log.err
[2024-06-30 05:12:08] -rw-r--r-- 1 boincer umatlas     21232 Jun 30 05:12 stderr.txt
[2024-06-30 05:12:08] HITS file was successfully produced:
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas 1780764 Jun 30 05:11 shared/HITS.pool.root.1
[2024-06-30 05:12:08]  *** Contents of shared directory: ***
[2024-06-30 05:12:08] total 139336
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas 138105876 Jun 30 04:19 ATLAS.root_0
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas     17656 Jun 30 04:19 start_atlas.sh
[2024-06-30 05:12:08] -rw-r--r-- 2 boincer umatlas    482419 Jun 30 04:19 input.tar.gz
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   1780764 Jun 30 05:11 HITS.pool.root.1
[2024-06-30 05:12:08] -rw------- 1 boincer umatlas   2283520 Jun 30 05:12 result.tar.gz
05:12:10 (16073): run_atlas exited; CPU time 457.637732
05:12:10 (16073): called boinc_finish(0)

</stderr_txt>
]]>

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