Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-28 11:48:58 (6064): Detected: vboxwrapper 26206
2024-06-28 11:48:58 (6064): Detected: BOINC client v8.0.2
2024-06-28 11:48:59 (6064): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-28 11:48:59 (6064): Successfully copied 'init_data.xml' to the shared directory.
2024-06-28 11:48:59 (6064): Create VM. (boinc_ecac01a218072f4d, slot#0)
2024-06-28 11:49:00 (6064): Setting Memory Size for VM. (6600MB)
2024-06-28 11:49:00 (6064): Setting CPU Count for VM. (4)
2024-06-28 11:49:00 (6064): Setting Chipset Options for VM.
2024-06-28 11:49:01 (6064): Setting Graphics Controller Options for VM.
2024-06-28 11:49:01 (6064): Setting Boot Options for VM.
2024-06-28 11:49:01 (6064): Setting Network Configuration for NAT.
2024-06-28 11:49:01 (6064): Enabling VM Network Access.
2024-06-28 11:49:02 (6064): Disabling USB Support for VM.
2024-06-28 11:49:02 (6064): Disabling COM Port Support for VM.
2024-06-28 11:49:02 (6064): Disabling LPT Port Support for VM.
2024-06-28 11:49:02 (6064): Disabling Audio Support for VM.
2024-06-28 11:49:03 (6064): Disabling Clipboard Support for VM.
2024-06-28 11:49:03 (6064): Disabling Drag and Drop Support for VM.
2024-06-28 11:49:03 (6064): Adding storage controller(s) to VM.
2024-06-28 11:49:04 (6064): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-28 11:49:04 (6064): Adding VirtualBox Guest Additions to VM.
2024-06-28 11:49:04 (6064): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-28 11:49:05 (6064): forwarding host port 60426 to guest port 80
2024-06-28 11:49:05 (6064): Enabling remote desktop for VM.
2024-06-28 11:49:05 (6064): Enabling shared directory for VM.
2024-06-28 11:49:06 (6064): Starting VM using VBoxManage interface. (boinc_ecac01a218072f4d, slot#0)
2024-06-28 11:49:14 (6064): Successfully started VM. (PID = '9436')
2024-06-28 11:49:14 (6064): Reporting VM Process ID to BOINC.
2024-06-28 11:49:14 (6064): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-28 11:49:14 (6064): Guest Log: CPUID EDX: 0x178bfbff
2024-06-28 11:49:14 (6064): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-28 11:49:14 (6064): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-28 11:49:14 (6064): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-28 11:49:14 (6064): Detected: Web Application Enabled (http://localhost:60426)
2024-06-28 11:49:14 (6064): Detected: Remote Desktop Enabled (localhost:60430)
2024-06-28 11:49:14 (6064): Preference change detected
2024-06-28 11:49:14 (6064): Setting CPU throttle for VM. (100%)
2024-06-28 11:49:14 (6064): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-28 11:49:16 (6064): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-28 11:49:16 (6064): Guest Log: BIOS: Booting from Hard Disk...
2024-06-28 11:49:19 (6064): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-28 11:49:19 (6064): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-28 11:49:19 (6064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-28 11:49:25 (6064): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-28 11:49:25 (6064): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-28 11:49:33 (6064): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000231 main     Log opened 2024-06-28T11:49:31.986312000Z
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000324 main     OS Product: Linux
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000359 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000386 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000413 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000414 main     Process ID: 1370
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.000415 main     Package type: LINUX_64BITS_GENERIC
2024-06-28 11:49:33 (6064): Guest Log: 00:00:00.001829 main     5.2.32 r132073 started. Verbose level = 0
2024-06-28 11:49:33 (6064): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-28 11:49:33 (6064): Guest Log: [INFO] Mounting shared directory
2024-06-28 11:49:33 (6064): Guest Log: [INFO] Checking for init_data.xml
2024-06-28 11:49:43 (6064): Guest Log: 00:00:10.010168 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 854 740 000ns (GuestNow=1 719 571 783 138 253 000 ns GuestLast=1 719 575 371 992 993 000 ns fSetTimeLastLoop=true )
2024-06-28 11:49:47 (6064): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-28 11:49:47 (6064): Guest Log: [INFO] Detected branch: prod
2024-06-28 11:49:47 (6064): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-28 11:49:47 (6064): Guest Log: Copying input files
2024-06-28 11:49:49 (6064): Guest Log: Copied input files into RunAtlas.
2024-06-28 11:49:49 (6064): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2024-06-28 11:51:31 (6064): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-28 11:51:31 (6064): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-28 11:51:31 (6064): Guest Log: 2.6.3.0 1649 1 29604 134387 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.130:3128 1
2024-06-28 11:51:32 (6064): Guest Log: copied the webapp to /var/www
2024-06-28 11:51:32 (6064): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-28 11:51:32 (6064): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-28 11:51:32 (6064): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-28 11:51:32 (6064): Guest Log:  *** Starting ATLAS job. (PandaID=6246265265 taskID=40102688) ***
2024-06-28 13:30:53 (6064): Status Report: Elapsed Time: '6000.956881'
2024-06-28 13:30:53 (6064): Status Report: CPU Time: '19171.390625'
2024-06-28 15:13:01 (6064): Status Report: Elapsed Time: '12000.956881'
2024-06-28 15:13:01 (6064): Status Report: CPU Time: '40514.859375'
2024-06-28 16:54:36 (6064): Status Report: Elapsed Time: '18000.956881'
2024-06-28 16:54:36 (6064): Status Report: CPU Time: '62919.703125'
2024-06-28 17:11:12 (6064): Guest Log:  *** Job finished ***
2024-06-28 17:11:12 (6064): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:01,870 | INFO     | [payload] failed_post thread has finished
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:02,779 | INFO     | [job] queue monitor thread has finished
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:05,073 | INFO     | [data] queue_monitor thread has finished
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:06,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466936084288)>', '<ExcThread(monitor, started 140466360149760)>']
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:06,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:06,299 | INFO     | [monitor] control thread has ended
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,075 | INFO     | all workflow threads have been joined
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,075 | INFO     | end of generic workflow (traces error code: 0)
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,075 | INFO     | traces error code: 0
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,154 [wrapper] ==== pilot stdout END ====
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,160 [wrapper] ==== wrapper stdout RESUME ====
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,165 [wrapper] pilotpid: 6072
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,169 [wrapper] Pilot exit status: 0
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,223 [wrapper] pandaids: 6246265265
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,256 [wrapper] cleanup supervisor_pilot 24541 6073
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,263 [wrapper] Test setup, not cleaning
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,269 [wrapper] ==== wrapper stdout END ====
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,275 [wrapper] ==== wrapper stderr END ====
2024-06-28 17:11:12 (6064): Guest Log: 2024-06-28 16:11:11,283 [wrapper] apfmon messages muted
2024-06-28 17:11:12 (6064): Guest Log:  *** Error codes and diagnostics ***
2024-06-28 17:11:12 (6064): Guest Log:     "exeErrorCode": 0,
2024-06-28 17:11:12 (6064): Guest Log:     "exeErrorDiag": "",
2024-06-28 17:11:12 (6064): Guest Log:     "pilotErrorCode": 0,
2024-06-28 17:11:12 (6064): Guest Log:     "pilotErrorDiag": "",
2024-06-28 17:11:12 (6064): Guest Log:  *** Listing of results directory ***
2024-06-28 17:11:12 (6064): Guest Log: total 180864
2024-06-28 17:11:12 (6064): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 14:34 pilot3.tar.gz
2024-06-28 17:11:12 (6064): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 15:12 queuedata.json
2024-06-28 17:11:12 (6064): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 15:12 runpilot2-wrapper.sh
2024-06-28 17:11:12 (6064): Guest Log: -rwxr-xr-x. 1 atlas atlas      9456 Jun 28 10:49 init_data.xml
2024-06-28 17:11:12 (6064): Guest Log: -rwxr-xr-x. 1 atlas atlas    482507 Jun 28 10:49 input.tar.gz
2024-06-28 17:11:12 (6064): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 28 10:49 start_atlas.sh
2024-06-28 17:11:12 (6064): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 28 10:49 EVNT.34667618._000002.pool.root.1 -> /data/./ATLAS.root_0
2024-06-28 17:11:12 (6064): Guest Log: -rw-r--r--. 1 atlas atlas      2591 Jun 28 10:51 pandaJob.out
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas       460 Jun 28 10:51 setup.sh.local
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas   1036145 Jun 28 10:54 agis_schedconf.cvmfs.json
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas   1321378 Jun 28 10:54 cric_ddmendpoints.json
2024-06-28 17:11:12 (6064): Guest Log: drwx------. 4 atlas atlas      4096 Jun 28 10:54 pilot3
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas 177647683 Jun 28 16:10 HITS.40102688._000057.pool.root.1
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas        95 Jun 28 16:10 pilot_heartbeat.json
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas      1032 Jun 28 16:10 memory_monitor_summary.json
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas         0 Jun 28 16:10 agis_ddmendpoints.agis.ALL.json
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas    379116 Jun 28 16:10 log.40102688._000057.job.log.tgz.1
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas      7728 Jun 28 16:10 heartbeat.json
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 28 16:11 pilotlog.txt
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas   1656792 Jun 28 16:11 log.40102688._000057.job.log.1
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas       357 Jun 28 16:11 output.list
2024-06-28 17:11:12 (6064): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 28 16:11 runtime_log
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas   2058240 Jun 28 16:11 result.tar.gz
2024-06-28 17:11:12 (6064): Guest Log: -rw-r--r--. 1 atlas atlas     11294 Jun 28 16:11 runtime_log.err
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas       648 Jun 28 16:11 FmtLDmky5g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDm1OZKDmnVaBVo.diag
2024-06-28 17:11:12 (6064): Guest Log: Looking for outputfile HITS.40102688._000057.pool.root.1
2024-06-28 17:11:12 (6064): Guest Log: HITS file was successfully produced
2024-06-28 17:11:12 (6064): Guest Log: -rw-------. 1 atlas atlas 177647683 Jun 28 16:10 /home/atlas/RunAtlas/HITS.40102688._000057.pool.root.1
2024-06-28 17:11:13 (6064): Guest Log: Successfully finished the ATLAS job!
2024-06-28 17:11:13 (6064): Guest Log: Copying the results back to the shared directory!
2024-06-28 17:11:13 (6064): Guest Log:  *** Contents of shared directory: ***
2024-06-28 17:11:13 (6064): Guest Log: total 560632
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root 393856107 Jun 28 10:48 ATLAS.root_0
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root 177647683 Jun 28 16:11 HITS.pool.root.1
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root      9456 Jun 28 10:48 init_data.xml
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root    482507 Jun 27 15:23 input.tar.gz
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root   2058240 Jun 28 16:11 result.tar.gz
2024-06-28 17:11:13 (6064): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 15:23 start_atlas.sh
2024-06-28 17:11:13 (6064): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-28 17:11:13 (6064): VM Completion File Detected.
2024-06-28 17:11:13 (6064): Powering off VM.
2024-06-28 17:11:14 (6064): Successfully stopped VM.
2024-06-28 17:11:14 (6064): Deregistering VM. (boinc_ecac01a218072f4d, slot#0)
2024-06-28 17:11:14 (6064): Removing network bandwidth throttle group from VM.
2024-06-28 17:11:14 (6064): Removing VM from VirtualBox.
17:11:19 (6064): called boinc_finish(0)

</stderr_txt>
]]>

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