Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 16:18:13 (2956): Detected: vboxwrapper 26206
2024-06-27 16:18:13 (2956): Detected: BOINC client v8.0.2
2024-06-27 16:18:14 (2956): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-27 16:18:14 (2956): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 16:18:15 (2956): Create VM. (boinc_f5a36e00734fa794, slot#1)
2024-06-27 16:18:15 (2956): Setting Memory Size for VM. (6600MB)
2024-06-27 16:18:15 (2956): Setting CPU Count for VM. (4)
2024-06-27 16:18:16 (2956): Setting Chipset Options for VM.
2024-06-27 16:18:16 (2956): Setting Graphics Controller Options for VM.
2024-06-27 16:18:16 (2956): Setting Boot Options for VM.
2024-06-27 16:18:16 (2956): Setting Network Configuration for NAT.
2024-06-27 16:18:17 (2956): Enabling VM Network Access.
2024-06-27 16:18:17 (2956): Disabling USB Support for VM.
2024-06-27 16:18:17 (2956): Disabling COM Port Support for VM.
2024-06-27 16:18:17 (2956): Disabling LPT Port Support for VM.
2024-06-27 16:18:18 (2956): Disabling Audio Support for VM.
2024-06-27 16:18:18 (2956): Disabling Clipboard Support for VM.
2024-06-27 16:18:18 (2956): Disabling Drag and Drop Support for VM.
2024-06-27 16:18:18 (2956): Adding storage controller(s) to VM.
2024-06-27 16:18:19 (2956): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 16:18:19 (2956): Adding VirtualBox Guest Additions to VM.
2024-06-27 16:18:19 (2956): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 16:18:20 (2956): forwarding host port 58518 to guest port 80
2024-06-27 16:18:20 (2956): Enabling remote desktop for VM.
2024-06-27 16:18:20 (2956): Enabling shared directory for VM.
2024-06-27 16:18:21 (2956): Starting VM using VBoxManage interface. (boinc_f5a36e00734fa794, slot#1)
2024-06-27 16:18:28 (2956): Successfully started VM. (PID = '7476')
2024-06-27 16:18:28 (2956): Reporting VM Process ID to BOINC.
2024-06-27 16:18:28 (2956): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-27 16:18:28 (2956): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 16:18:28 (2956): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 16:18:28 (2956): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 16:18:28 (2956): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 16:18:28 (2956): Detected: Web Application Enabled (http://localhost:58518)
2024-06-27 16:18:28 (2956): Detected: Remote Desktop Enabled (localhost:58526)
2024-06-27 16:18:28 (2956): Preference change detected
2024-06-27 16:18:28 (2956): Setting CPU throttle for VM. (100%)
2024-06-27 16:18:28 (2956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 16:18:30 (2956): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 16:18:30 (2956): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 16:18:33 (2956): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 16:18:33 (2956): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 16:18:33 (2956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 16:18:37 (2956): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 16:18:37 (2956): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 16:18:43 (2956): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000182 main     Log opened 2024-06-27T16:18:41.605758000Z
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000258 main     OS Product: Linux
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000290 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000315 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000341 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000342 main     Process ID: 1364
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.000343 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 16:18:43 (2956): Guest Log: 00:00:00.001237 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 16:18:43 (2956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 16:18:43 (2956): Guest Log: [INFO] Mounting shared directory
2024-06-27 16:18:43 (2956): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 16:18:53 (2956): Guest Log: 00:00:10.022812 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 971 730 000ns (GuestNow=1 719 501 532 636 301 000 ns GuestLast=1 719 505 121 608 031 000 ns fSetTimeLastLoop=true )
2024-06-27 16:20:31 (2956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 16:20:31 (2956): Guest Log: [INFO] Detected branch: prod
2024-06-27 16:20:31 (2956): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 16:20:31 (2956): Guest Log: Copying input files
2024-06-27 16:20:33 (2956): Guest Log: Copied input files into RunAtlas.
2024-06-27 16:20:33 (2956): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2024-06-27 16:21:59 (2956): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 16:21:59 (2956): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 16:21:59 (2956): Guest Log: 2.6.3.0 1680 2 31612 134353 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.130:3128 1
2024-06-27 16:22:00 (2956): Guest Log: copied the webapp to /var/www
2024-06-27 16:22:00 (2956): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-27 16:22:00 (2956): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-27 16:22:00 (2956): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 16:22:00 (2956): Guest Log:  *** Starting ATLAS job. (PandaID=6246265264 taskID=40102779) ***
2024-06-27 18:00:43 (2956): Status Report: Elapsed Time: '6000.936832'
2024-06-27 18:00:43 (2956): Status Report: CPU Time: '19720.046875'
2024-06-27 19:45:13 (2956): Status Report: Elapsed Time: '12001.369165'
2024-06-27 19:45:13 (2956): Status Report: CPU Time: '41700.781250'
2024-06-27 21:18:36 (2956): Guest Log:  *** Job finished ***
2024-06-27 21:18:36 (2956): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:26,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:26,789 | INFO     | [job] queue monitor thread has finished
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:30,557 | INFO     | [data] queue_monitor thread has finished
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:30,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018670999360)>', '<ExcThread(monitor, started 140018014222080)>']
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:31,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:31,559 | INFO     | [monitor] control thread has ended
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,640 | INFO     | all workflow threads have been joined
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,640 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,641 | INFO     | traces error code: 0
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,726 [wrapper] ==== pilot stdout END ====
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,730 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,736 [wrapper] pilotpid: 6099
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,741 [wrapper] Pilot exit status: 0
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,780 [wrapper] pandaids: 6246265264
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,829 [wrapper] cleanup supervisor_pilot 21490 6100
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,836 [wrapper] Test setup, not cleaning
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,841 [wrapper] ==== wrapper stdout END ====
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,846 [wrapper] ==== wrapper stderr END ====
2024-06-27 21:18:36 (2956): Guest Log: 2024-06-27 20:18:35,855 [wrapper] apfmon messages muted
2024-06-27 21:18:36 (2956): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 21:18:36 (2956): Guest Log:     "exeErrorCode": 0,
2024-06-27 21:18:36 (2956): Guest Log:     "exeErrorDiag": "",
2024-06-27 21:18:36 (2956): Guest Log:     "pilotErrorCode": 0,
2024-06-27 21:18:36 (2956): Guest Log:     "pilotErrorDiag": "",
2024-06-27 21:18:36 (2956): Guest Log:  *** Listing of results directory ***
2024-06-27 21:18:36 (2956): Guest Log: total 170836
2024-06-27 21:18:36 (2956): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 14:34 pilot3.tar.gz
2024-06-27 21:18:36 (2956): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 15:12 runpilot2-wrapper.sh
2024-06-27 21:18:36 (2956): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 15:12 queuedata.json
2024-06-27 21:18:36 (2956): Guest Log: -rwxr-xr-x. 1 atlas atlas      9456 Jun 27 15:20 init_data.xml
2024-06-27 21:18:36 (2956): Guest Log: -rwxr-xr-x. 1 atlas atlas    482507 Jun 27 15:20 input.tar.gz
2024-06-27 21:18:36 (2956): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 15:20 start_atlas.sh
2024-06-27 21:18:36 (2956): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 15:20 EVNT.34668264._000002.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 21:18:36 (2956): Guest Log: -rw-r--r--. 1 atlas atlas      2590 Jun 27 15:22 pandaJob.out
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas       460 Jun 27 15:22 setup.sh.local
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 15:25 agis_schedconf.cvmfs.json
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 15:25 cric_ddmendpoints.json
2024-06-27 21:18:36 (2956): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 15:25 pilot3
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas 167879341 Jun 27 20:16 HITS.40102779._000058.pool.root.1
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas      1047 Jun 27 20:16 memory_monitor_summary.json
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 20:16 agis_ddmendpoints.agis.ALL.json
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas    339088 Jun 27 20:16 log.40102779._000058.job.log.tgz.1
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 20:17 pilot_heartbeat.json
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas      7726 Jun 27 20:18 heartbeat.json
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 27 20:18 pilotlog.txt
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas   1449237 Jun 27 20:18 log.40102779._000058.job.log.1
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 20:18 output.list
2024-06-27 21:18:36 (2956): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 20:18 runtime_log
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas   1812480 Jun 27 20:18 result.tar.gz
2024-06-27 21:18:36 (2956): Guest Log: -rw-r--r--. 1 atlas atlas     11294 Jun 27 20:18 runtime_log.err
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas       647 Jun 27 20:18 Aj7NDmQy5g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmt8oKDmdF9Y3n.diag
2024-06-27 21:18:36 (2956): Guest Log: Looking for outputfile HITS.40102779._000058.pool.root.1
2024-06-27 21:18:36 (2956): Guest Log: HITS file was successfully produced
2024-06-27 21:18:36 (2956): Guest Log: -rw-------. 1 atlas atlas 167879341 Jun 27 20:16 /home/atlas/RunAtlas/HITS.40102779._000058.pool.root.1
2024-06-27 21:18:37 (2956): Guest Log: Successfully finished the ATLAS job!
2024-06-27 21:18:37 (2956): Guest Log: Copying the results back to the shared directory!
2024-06-27 21:18:37 (2956): Guest Log:  *** Contents of shared directory: ***
2024-06-27 21:18:37 (2956): Guest Log: total 546200
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root 389092861 Jun 27 15:18 ATLAS.root_0
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root 167879341 Jun 27 20:18 HITS.pool.root.1
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root      9456 Jun 27 15:18 init_data.xml
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root    482507 Jun 27 15:18 input.tar.gz
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root   1812480 Jun 27 20:18 result.tar.gz
2024-06-27 21:18:37 (2956): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 15:18 start_atlas.sh
2024-06-27 21:18:37 (2956): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 21:18:37 (2956): VM Completion File Detected.
2024-06-27 21:18:37 (2956): Powering off VM.
2024-06-27 21:18:38 (2956): Successfully stopped VM.
2024-06-27 21:18:38 (2956): Deregistering VM. (boinc_f5a36e00734fa794, slot#1)
2024-06-27 21:18:38 (2956): Removing network bandwidth throttle group from VM.
2024-06-27 21:18:38 (2956): Removing VM from VirtualBox.
21:18:43 (2956): called boinc_finish(0)

</stderr_txt>
]]>

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