Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
09:21:15 (203222): wrapper (7.7.26015): starting
09:21:15 (203222): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 09:21:15] Arguments: --nthreads 12
[2024-06-27 09:21:15] Threads: 12
[2024-06-27 09:21:15] Checking for CVMFS
[2024-06-27 09:21:15] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 09:21:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 09:21:15] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 09:21:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 09:21:15] 2.10.1.0 2811 231492 151176 134353 1 230 32039014 45568001 5741 130560 0 1365584182 99.760 869802789 16973 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-06-27 09:21:15] CVMFS is ok
[2024-06-27 09:21:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 09:21:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 09:21:15] Further information can be found at the LHC@home message board.
[2024-06-27 09:21:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 09:21:15] Checking for apptainer binary...
[2024-06-27 09:21:15] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 09:21:15] Running /usr/bin/apptainer --version
[2024-06-27 09:21:15] apptainer version 1.3.2-1.el7
[2024-06-27 09:21:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 09:21:17] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0133.triumf.lcg
[2024-06-27 09:21:17] apptainer works
[2024-06-27 09:21:17] Set ATHENA_PROC_NUMBER=12
[2024-06-27 09:21:17] Set ATHENA_CORE_NUMBER=12
[2024-06-27 09:21:17] Starting ATLAS job with PandaID=6246256520
[2024-06-27 09:21:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 10:21:16]  *** The last 200 lines of the pilot log: ***
[2024-06-27 10:21:16]  domain=
[2024-06-27 10:21:16]  filesize=351999
[2024-06-27 10:21:16]  filetype=log
[2024-06-27 10:21:16]  guid=7ac1ae46-bad6-4ea0-b32d-f4c14129cef9
[2024-06-27 10:21:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-27 10:21:16]  is_tar=False
[2024-06-27 10:21:16]  lfn=log.40102733._000056.job.log.tgz.1
[2024-06-27 10:21:16]  mtime=0
[2024-06-27 10:21:16]  protocol_id=None
[2024-06-27 10:21:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 10:21:16]  replicas=None
[2024-06-27 10:21:16]  scope=mc23_13p6TeV
[2024-06-27 10:21:16]  status=None
[2024-06-27 10:21:16]  status_code=0
[2024-06-27 10:21:16]  storage_token=
[2024-06-27 10:21:16]  surl=/home/boinc/slots/0/PanDA_Pilot-6246256520/log.40102733._000056.job.log.tgz.1
[2024-06-27 10:21:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/15/log.40102733._000056.job.log.tgz.1
[2024-06-27 10:21:16]  workdir=None
[2024-06-27 10:21:16] ]
[2024-06-27 10:21:16] 2024-06-27 17:20:54,474 | INFO     | transferring file log.40102733._000056.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246256520/log.40102733._000056.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 10:21:16] 2024-06-27 17:20:54,475 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246256520/log.40102733._000056.job.log.tgz.1 /home/boinc/slots/0/log.40102733._000056.job.log.t
[2024-06-27 10:21:16] 2024-06-27 17:20:54,499 | INFO     | adding to output.list: log.40102733._000056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/15/log.40102733._000056.job.log.tg
[2024-06-27 10:21:16] 2024-06-27 17:20:54,499 | INFO     | summary of transferred files:
[2024-06-27 10:21:16] 2024-06-27 17:20:54,500 | INFO     |  -- lfn=log.40102733._000056.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 10:21:16] 2024-06-27 17:20:54,500 | INFO     | stage-out finished correctly
[2024-06-27 10:21:16] 2024-06-27 17:20:54,553 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 10:21:16] 2024-06-27 17:20:55,823 | INFO     | monitor loop #281: job 0:6246256520 is in state 'finished'
[2024-06-27 10:21:16] 2024-06-27 17:20:55,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 10:21:16] 2024-06-27 17:20:57,118 | INFO     | job 6246256520 has state=finished
[2024-06-27 10:21:16] 2024-06-27 17:20:57,118 | INFO     | preparing for final server update for job 6246256520 in state='finished'
[2024-06-27 10:21:16] 2024-06-27 17:20:57,119 | INFO     | this job has now completed (state=finished)
[2024-06-27 10:21:16] 2024-06-27 17:20:57,119 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 10:21:16] 2024-06-27 17:20:57,119 | INFO     | job 6246256520 has finished - writing final server update
[2024-06-27 10:21:16] 2024-06-27 17:20:57,119 | INFO     | total number of processed events: 400 (read)
[2024-06-27 10:21:16] 2024-06-27 17:20:57,125 | INFO     | executing command: lscpu
[2024-06-27 10:21:16] 2024-06-27 17:20:57,195 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 10:21:16] 2024-06-27 17:20:57,196 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 10:21:16] 2024-06-27 17:20:57,256 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 10:21:16] 2024-06-27 17:20:58,327 | INFO     | monitor loop #282: job 0:6246256520 is in state 'finished'
[2024-06-27 10:21:16] 2024-06-27 17:20:58,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 10:21:16] 2024-06-27 17:21:00,831 | INFO     | monitor loop #283: job 0:6246256520 is in state 'finished'
[2024-06-27 10:21:16] 2024-06-27 17:21:00,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,220 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 10:21:16] 2024-06-27 17:21:02,220 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246256520/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,221 | INFO     | extracted standard info from prmon json
[2024-06-27 10:21:16] 2024-06-27 17:21:02,221 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 10:21:16] 2024-06-27 17:21:02,221 | WARNING  | GPU info not found in prmon json
[2024-06-27 10:21:16] 2024-06-27 17:21:02,221 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 10:21:16] 2024-06-27 17:21:02,221 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 10:21:16] 2024-06-27 17:21:02,222 | INFO     | fitting pss+swap vs Time
[2024-06-27 10:21:16] 2024-06-27 17:21:02,222 | INFO     | model: linear, x: [1719505614.0, 1719505675.0, 1719505736.0, 1719505797.0, 1719505858.0, 1719505919.0, 1719505980.0, 1719506041.0, 1719506102.0, 1719506163.0, 1719
[2024-06-27 10:21:16] 2024-06-27 17:21:02,222 | INFO     | sum of square deviations: 43584073.0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | sum of deviations: 18697193417.5
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | mean x: 1719507169.5
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | mean y: 2695478.2115384615
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | -- intersect: -737651128911.2496
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | intersect: -737651128911.2496
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | chi2: 1.8706027079673615
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | -- intersect: -737651128911.2496
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | current memory leak: 428.99 B/s (using 52 data points, chi2=1.87)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,223 | INFO     | ..............................
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . Timing measurements:
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . get job = 0 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . initial setup = 2 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . payload setup = 4 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . stage-in = 0 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . payload execution = 3544 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . stage-out = 0 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | . log creation = 0 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,224 | INFO     | ..............................
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | 
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | job summary report
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | --------------------------------------------------
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | PanDA job id: 6246256520
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | task id: 40102733
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | errors: (none)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,280 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | pilot state: finished 
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | transexitcode: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | exeerrorcode: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | exeerrordiag: 
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | exitcode: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | exitmsg: OK
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | cpuconsumptiontime: 30576 s
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | nevents: 400
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | neventsw: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | pid: 213271
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | pgrp: 213271
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | corecount: 12
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | event service: False
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | sizes: {0: 2386986, 4: 2387192, 11: 2387220, 3553: 2412871, 3554: 2421881, 3561: 2421995}
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | --------------------------------------------------
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | 
[2024-06-27 10:21:16] 2024-06-27 17:21:02,281 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | job 6246256520 has completed (purged errors)
[2024-06-27 10:21:16] 2024-06-27 17:21:02,307 | INFO     | overall cleanup function is called
[2024-06-27 10:21:16] 2024-06-27 17:21:03,310 | INFO     | --- collectZombieJob: --- 10, [213271]
[2024-06-27 10:21:16] 2024-06-27 17:21:03,310 | INFO     | zombie collector waiting for pid 213271
[2024-06-27 10:21:16] 2024-06-27 17:21:03,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 10:21:16] 2024-06-27 17:21:04,316 | INFO     | collected zombie processes
[2024-06-27 10:21:16] 2024-06-27 17:21:04,316 | INFO     | will now attempt to kill all subprocesses of pid=213271
[2024-06-27 10:21:16] 2024-06-27 17:21:04,445 | INFO     | process IDs to be killed: [213271] (in reverse order)
[2024-06-27 10:21:16] 2024-06-27 17:21:04,530 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 10:21:16] 2024-06-27 17:21:04,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 10:21:16] 2024-06-27 17:21:04,538 | INFO     | did not find any defunct processes belonging to 213271
[2024-06-27 10:21:16] 2024-06-27 17:21:04,545 | INFO     | did not find any defunct processes belonging to 213271
[2024-06-27 10:21:16] 2024-06-27 17:21:04,545 | INFO     | ready for new job
[2024-06-27 10:21:16] 2024-06-27 17:21:04,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 10:21:16] 2024-06-27 17:21:04,547 | INFO     | *************************************
[2024-06-27 10:21:16] 2024-06-27 17:21:04,548 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 10:21:16] 2024-06-27 17:21:04,548 | INFO     | *************************************
[2024-06-27 10:21:16] 2024-06-27 17:21:04,548 | INFO     | 
[2024-06-27 10:21:16] 2024-06-27 17:21:04,552 | INFO     | architecture information:
[2024-06-27 10:21:16] 2024-06-27 17:21:04,553 | INFO     | executing command: cat /etc/os-release
[2024-06-27 10:21:16] 2024-06-27 17:21:04,575 | INFO     | cat /etc/os-release:
[2024-06-27 10:21:16] NAME="CentOS Linux"
[2024-06-27 10:21:16] VERSION="7 (Core)"
[2024-06-27 10:21:16] ID="centos"
[2024-06-27 10:21:16] ID_LIKE="rhel fedora"
[2024-06-27 10:21:16] VERSION_ID="7"
[2024-06-27 10:21:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 10:21:16] ANSI_COLOR="0;31"
[2024-06-27 10:21:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 10:21:16] HOME_URL="https://www.centos.org/"
[2024-06-27 10:21:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 10:21:16] 
[2024-06-27 10:21:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 10:21:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 10:21:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 10:21:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 10:21:16] 
[2024-06-27 10:21:16] 2024-06-27 17:21:04,575 | INFO     | *************************************
[2024-06-27 10:21:16] 2024-06-27 17:21:05,079 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 10:21:16] 2024-06-27 17:21:05,099 | INFO     | sufficient remaining disk space (2030464663552 B)
[2024-06-27 10:21:16] 2024-06-27 17:21:05,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 10:21:16] 2024-06-27 17:21:05,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 10:21:16] 2024-06-27 17:21:05,100 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 10:21:16] 2024-06-27 17:21:05,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 10:21:16] 2024-06-27 17:21:05,100 | INFO     | aborting loop
[2024-06-27 10:21:16] 2024-06-27 17:21:05,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 10:21:16] 2024-06-27 17:21:05,174 | INFO     | all payload control threads have been joined
[2024-06-27 10:21:16] 2024-06-27 17:21:05,676 | INFO     | all job control threads have been joined
[2024-06-27 10:21:16] 2024-06-27 17:21:05,685 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 10:21:16] 2024-06-27 17:21:05,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 10:21:16] 2024-06-27 17:21:05,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 10:21:16] 2024-06-27 17:21:05,864 | INFO     | all data control threads have been joined
[2024-06-27 10:21:16] 2024-06-27 17:21:06,105 | INFO     | [job] retrieve thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,106 | INFO     | [job] job monitor thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,138 | INFO     | [job] validate thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,180 | INFO     | [payload] control thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,306 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,444 | INFO     | [payload] failed_post thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,477 | INFO     | [data] copytool_in thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,661 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,682 | INFO     | [job] control thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,869 | INFO     | [data] control thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:06,932 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:07,106 | INFO     | [data] copytool_out thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:07,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 10:21:16] 2024-06-27 17:21:07,434 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:07,561 | INFO     | [payload] validate_post thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:08,297 | INFO     | [job] queue monitor thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:09,161 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 10:21:16] 2024-06-27 17:21:10,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681716356928)>', '<ExcThread(monitor, started 139681421305600)>']
[2024-06-27 10:21:16] 2024-06-27 17:21:10,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 10:21:16] 2024-06-27 17:21:10,711 | INFO     | [monitor] control thread has ended
[2024-06-27 10:21:16] 2024-06-27 17:21:15,378 | INFO     | all workflow threads have been joined
[2024-06-27 10:21:16] 2024-06-27 17:21:15,378 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 10:21:16] 2024-06-27 17:21:15,378 | INFO     | traces error code: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:15,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 10:21:16] 2024-06-27 17:21:15,484 [wrapper] ==== pilot stdout END ====
[2024-06-27 10:21:16] 2024-06-27 17:21:15,487 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 10:21:16] 2024-06-27 17:21:15,489 [wrapper] pilotpid: 206867
[2024-06-27 10:21:16] 2024-06-27 17:21:15,492 [wrapper] Pilot exit status: 0
[2024-06-27 10:21:16] 2024-06-27 17:21:15,501 [wrapper] pandaids: 6246256520
[2024-06-27 10:21:16] 2024-06-27 17:21:15,564 [wrapper] cleanup supervisor_pilot 245253 206868
[2024-06-27 10:21:16] 2024-06-27 17:21:15,567 [wrapper] Test setup, not cleaning
[2024-06-27 10:21:16] 2024-06-27 17:21:15,571 [wrapper] ==== wrapper stdout END ====
[2024-06-27 10:21:16] 2024-06-27 17:21:15,574 [wrapper] ==== wrapper stderr END ====
[2024-06-27 10:21:16] 2024-06-27 17:21:15,581 [wrapper] apfmon messages muted
[2024-06-27 10:21:16]  *** Error codes and diagnostics ***
[2024-06-27 10:21:16]     "exeErrorCode": 0,
[2024-06-27 10:21:16]     "exeErrorDiag": "",
[2024-06-27 10:21:16]     "pilotErrorCode": 0,
[2024-06-27 10:21:16]     "pilotErrorDiag": "",
[2024-06-27 10:21:16]  *** Listing of results directory ***
[2024-06-27 10:21:16] total 570300
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc    469766 Jun 27 07:34 pilot3.tar.gz
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc      5654 Jun 27 08:03 queuedata.json
[2024-06-27 10:21:16] -rwx------ 1 boinc boinc     32220 Jun 27 08:04 runpilot2-wrapper.sh
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc       100 Jun 27 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 10:21:16] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 09:21 run_atlas
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc       105 Jun 27 09:21 job.xml
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc      6628 Jun 27 09:21 init_data.xml
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc 397006785 Jun 27 09:21 EVNT.34667889._000001.pool.root.1
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc     17537 Jun 27 09:21 start_atlas.sh
[2024-06-27 10:21:16] drwxrwx--x 2 boinc boinc      4096 Jun 27 09:21 shared
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc    482497 Jun 27 09:21 input.tar.gz
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc         0 Jun 27 09:21 boinc_lockfile
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc      2578 Jun 27 09:21 pandaJob.out
[2024-06-27 10:21:16] -rw------- 1 boinc boinc       424 Jun 27 09:21 setup.sh.local
[2024-06-27 10:21:16] -rw------- 1 boinc boinc   1034827 Jun 27 09:21 agis_schedconf.cvmfs.json
[2024-06-27 10:21:16] -rw------- 1 boinc boinc         0 Jun 27 09:21 agis_ddmendpoints.agis.ALL.json
[2024-06-27 10:21:16] -rw------- 1 boinc boinc   1321363 Jun 27 09:21 cric_ddmendpoints.json
[2024-06-27 10:21:16] drwx------ 4 boinc boinc      4096 Jun 27 09:21 pilot3
[2024-06-27 10:21:16] -rw------- 1 boinc boinc 182040166 Jun 27 10:20 HITS.40102733._000056.pool.root.1
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc       529 Jun 27 10:20 boinc_task_state.xml
[2024-06-27 10:21:16] -rw------- 1 boinc boinc        95 Jun 27 10:20 pilot_heartbeat.json
[2024-06-27 10:21:16] -rw------- 1 boinc boinc      1036 Jun 27 10:20 memory_monitor_summary.json
[2024-06-27 10:21:16] -rw------- 1 boinc boinc    351999 Jun 27 10:20 log.40102733._000056.job.log.tgz.1
[2024-06-27 10:21:16] -rw------- 1 boinc boinc      7733 Jun 27 10:21 heartbeat.json
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc      8192 Jun 27 10:21 boinc_mmap_file
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc        27 Jun 27 10:21 wrapper_checkpoint.txt
[2024-06-27 10:21:16] -rw------- 1 boinc boinc      4210 Jun 27 10:21 pilotlog.txt
[2024-06-27 10:21:16] -rw------- 1 boinc boinc    344515 Jun 27 10:21 log.40102733._000056.job.log.1
[2024-06-27 10:21:16] -rw------- 1 boinc boinc       357 Jun 27 10:21 output.list
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc       620 Jun 27 10:21 runtime_log
[2024-06-27 10:21:16] -rw------- 1 boinc boinc    716800 Jun 27 10:21 result.tar.gz
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc     11286 Jun 27 10:21 runtime_log.err
[2024-06-27 10:21:16] -rw------- 1 boinc boinc       649 Jun 27 10:21 kNpLDmaq5g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmxOZKDmzvCvAo.diag
[2024-06-27 10:21:16] -rw-r--r-- 1 boinc boinc     21517 Jun 27 10:21 stderr.txt
[2024-06-27 10:21:16] HITS file was successfully produced:
[2024-06-27 10:21:16] -rw------- 1 boinc boinc 182040166 Jun 27 10:20 shared/HITS.pool.root.1
[2024-06-27 10:21:16]  *** Contents of shared directory: ***
[2024-06-27 10:21:16] total 566680
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc 397006785 Jun 27 09:21 ATLAS.root_0
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc     17537 Jun 27 09:21 start_atlas.sh
[2024-06-27 10:21:16] -rw-r--r-- 2 boinc boinc    482497 Jun 27 09:21 input.tar.gz
[2024-06-27 10:21:16] -rw------- 1 boinc boinc 182040166 Jun 27 10:20 HITS.pool.root.1
[2024-06-27 10:21:16] -rw------- 1 boinc boinc    716800 Jun 27 10:21 result.tar.gz
10:21:17 (203222): run_atlas exited; CPU time 30481.283831
10:21:17 (203222): called boinc_finish(0)

</stderr_txt>
]]>

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