Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:24:02 (134074): wrapper (7.7.26015): starting
13:24:02 (134074): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 13:24:03] Arguments: --nthreads 12
[2024-06-27 13:24:03] Threads: 12
[2024-06-27 13:24:03] Checking for CVMFS
[2024-06-27 13:24:03] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 13:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 13:24:03] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 13:24:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 13:24:03] 2.10.1.0 266471 1498 100616 134357 0 192 40135166 45568001 2075 130560 0 1233844 99.632 1303216 14902 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-06-27 13:24:03] CVMFS is ok
[2024-06-27 13:24:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 13:24:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 13:24:03] Further information can be found at the LHC@home message board.
[2024-06-27 13:24:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 13:24:03] Checking for apptainer binary...
[2024-06-27 13:24:03] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 13:24:03] Running /usr/bin/apptainer --version
[2024-06-27 13:24:03] apptainer version 1.3.2-1.el7
[2024-06-27 13:24:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 13:24:04] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0041.triumf.lcg
[2024-06-27 13:24:04] apptainer works
[2024-06-27 13:24:04] Set ATHENA_PROC_NUMBER=12
[2024-06-27 13:24:04] Set ATHENA_CORE_NUMBER=12
[2024-06-27 13:24:04] Starting ATLAS job with PandaID=6246251386
[2024-06-27 13:24:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 14:59:50]  *** The last 200 lines of the pilot log: ***
[2024-06-27 14:59:50]  ddmendpoint=NDGF-T1_DATADISK
[2024-06-27 14:59:50]  direct_access_lan=False
[2024-06-27 14:59:50]  direct_access_wan=False
[2024-06-27 14:59:50]  domain=
[2024-06-27 14:59:50]  filesize=374067
[2024-06-27 14:59:50]  filetype=log
[2024-06-27 14:59:50]  guid=67fd8a1a-d6c6-4379-8ca3-c3b6d6d6b1ac
[2024-06-27 14:59:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-27 14:59:50]  is_tar=False
[2024-06-27 14:59:50]  lfn=log.40102807._000053.job.log.tgz.1
[2024-06-27 14:59:50]  mtime=0
[2024-06-27 14:59:50]  protocol_id=None
[2024-06-27 14:59:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 14:59:50]  replicas=None
[2024-06-27 14:59:50]  scope=mc23_13p6TeV
[2024-06-27 14:59:50]  status=None
[2024-06-27 14:59:50]  status_code=0
[2024-06-27 14:59:50]  storage_token=
[2024-06-27 14:59:50]  surl=/home/boinc/slots/0/PanDA_Pilot-6246251386/log.40102807._000053.job.log.tgz.1
[2024-06-27 14:59:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/9b/log.40102807._000053.job.log.tgz.1
[2024-06-27 14:59:50]  workdir=None
[2024-06-27 14:59:50] ]
[2024-06-27 14:59:50] 2024-06-27 21:59:22,973 | INFO     | transferring file log.40102807._000053.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246251386/log.40102807._000053.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 14:59:50] 2024-06-27 21:59:22,974 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246251386/log.40102807._000053.job.log.tgz.1 /home/boinc/slots/0/log.40102807._000053.job.log.t
[2024-06-27 14:59:50] 2024-06-27 21:59:22,992 | INFO     | adding to output.list: log.40102807._000053.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/9b/log.40102807._000053.job.log.tg
[2024-06-27 14:59:50] 2024-06-27 21:59:22,993 | INFO     | summary of transferred files:
[2024-06-27 14:59:50] 2024-06-27 21:59:22,993 | INFO     |  -- lfn=log.40102807._000053.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 14:59:50] 2024-06-27 21:59:22,993 | INFO     | stage-out finished correctly
[2024-06-27 14:59:50] 2024-06-27 21:59:24,404 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 14:59:50] 2024-06-27 21:59:26,270 | INFO     | job 6246251386 has state=finished
[2024-06-27 14:59:50] 2024-06-27 21:59:26,270 | INFO     | preparing for final server update for job 6246251386 in state='finished'
[2024-06-27 14:59:50] 2024-06-27 21:59:26,271 | INFO     | this job has now completed (state=finished)
[2024-06-27 14:59:50] 2024-06-27 21:59:26,271 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 14:59:50] 2024-06-27 21:59:26,271 | INFO     | job 6246251386 has finished - writing final server update
[2024-06-27 14:59:50] 2024-06-27 21:59:26,271 | INFO     | total number of processed events: 400 (read)
[2024-06-27 14:59:50] 2024-06-27 21:59:26,274 | INFO     | executing command: lscpu
[2024-06-27 14:59:50] 2024-06-27 21:59:26,308 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 14:59:50] 2024-06-27 21:59:26,308 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 14:59:50] 2024-06-27 21:59:26,340 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 14:59:50] 2024-06-27 21:59:28,991 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 14:59:50] 2024-06-27 21:59:28,991 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246251386/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 14:59:50] 2024-06-27 21:59:28,992 | INFO     | extracted standard info from prmon json
[2024-06-27 14:59:50] 2024-06-27 21:59:28,992 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 14:59:50] 2024-06-27 21:59:28,992 | WARNING  | GPU info not found in prmon json
[2024-06-27 14:59:50] 2024-06-27 21:59:28,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 14:59:50] 2024-06-27 21:59:28,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 14:59:50] 2024-06-27 21:59:28,994 | INFO     | fitting pss+swap vs Time
[2024-06-27 14:59:50] 2024-06-27 21:59:28,994 | INFO     | model: linear, x: [1719520178.0, 1719520239.0, 1719520300.0, 1719520361.0, 1719520422.0, 1719520483.0, 1719520544.0, 1719520605.0, 1719520666.0, 1719520727.0, 1719
[2024-06-27 14:59:50] 2024-06-27 21:59:28,994 | INFO     | sum of square deviations: 204168830.9885056
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | sum of deviations: 29211268790.620697
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | mean x: 1719522801.0114942
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | mean y: 2540558.379310345
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | -- intersect: -246016611771.36874
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | intersect: -246016611771.36874
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | chi2: 2.0087059743650677
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | -- intersect: -246016611771.36874
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | current memory leak: 143.07 B/s (using 87 data points, chi2=2.01)
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | ..............................
[2024-06-27 14:59:50] 2024-06-27 21:59:28,995 | INFO     | . Timing measurements:
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . get job = 0 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . initial setup = 1 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . payload setup = 4 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . stage-in = 0 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . payload execution = 5689 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . stage-out = 0 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | . log creation = 0 s
[2024-06-27 14:59:50] 2024-06-27 21:59:28,996 | INFO     | ..............................
[2024-06-27 14:59:50] 2024-06-27 21:59:29,141 | WARNING  | process 146074 is no longer using CPU - aborting
[2024-06-27 14:59:50] 2024-06-27 21:59:29,142 | INFO     | aborting job monitoring since job object (job id=6246251386) has expired
[2024-06-27 14:59:50] 2024-06-27 21:59:29,488 | INFO     | 
[2024-06-27 14:59:50] 2024-06-27 21:59:29,488 | INFO     | job summary report
[2024-06-27 14:59:50] 2024-06-27 21:59:29,488 | INFO     | --------------------------------------------------
[2024-06-27 14:59:50] 2024-06-27 21:59:29,488 | INFO     | PanDA job id: 6246251386
[2024-06-27 14:59:50] 2024-06-27 21:59:29,488 | INFO     | task id: 40102807
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | errors: (none)
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | pilot state: finished 
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | transexitcode: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | exeerrorcode: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | exeerrordiag: 
[2024-06-27 14:59:50] 2024-06-27 21:59:29,489 | INFO     | exitcode: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | exitmsg: OK
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | cpuconsumptiontime: 46854 s
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | nevents: 400
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | neventsw: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | pid: 146074
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | pgrp: 146074
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | corecount: 12
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | event service: False
[2024-06-27 14:59:50] 2024-06-27 21:59:29,490 | INFO     | sizes: {0: 2387015, 3: 2387221, 11: 2387249, 5696: 2413861, 5697: 2422870, 5699: 2422870, 5703: 2423168}
[2024-06-27 14:59:50] 2024-06-27 21:59:29,491 | INFO     | --------------------------------------------------
[2024-06-27 14:59:50] 2024-06-27 21:59:29,491 | INFO     | 
[2024-06-27 14:59:50] 2024-06-27 21:59:29,491 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 14:59:50] 2024-06-27 21:59:29,514 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,516 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 14:59:50] 2024-06-27 21:59:29,517 | INFO     | job 6246251386 has completed (purged errors)
[2024-06-27 14:59:50] 2024-06-27 21:59:29,517 | INFO     | overall cleanup function is called
[2024-06-27 14:59:50] 2024-06-27 21:59:30,525 | INFO     | --- collectZombieJob: --- 10, [146074]
[2024-06-27 14:59:50] 2024-06-27 21:59:30,525 | INFO     | zombie collector waiting for pid 146074
[2024-06-27 14:59:50] 2024-06-27 21:59:30,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 14:59:50] 2024-06-27 21:59:31,530 | INFO     | collected zombie processes
[2024-06-27 14:59:50] 2024-06-27 21:59:31,530 | INFO     | will now attempt to kill all subprocesses of pid=146074
[2024-06-27 14:59:50] 2024-06-27 21:59:31,642 | INFO     | process IDs to be killed: [146074] (in reverse order)
[2024-06-27 14:59:50] 2024-06-27 21:59:31,704 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 14:59:50] 2024-06-27 21:59:31,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 14:59:50] 2024-06-27 21:59:31,713 | INFO     | did not find any defunct processes belonging to 146074
[2024-06-27 14:59:50] 2024-06-27 21:59:31,720 | INFO     | did not find any defunct processes belonging to 146074
[2024-06-27 14:59:50] 2024-06-27 21:59:31,720 | INFO     | ready for new job
[2024-06-27 14:59:50] 2024-06-27 21:59:31,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 14:59:50] 2024-06-27 21:59:31,723 | INFO     | *************************************
[2024-06-27 14:59:50] 2024-06-27 21:59:31,723 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 14:59:50] 2024-06-27 21:59:31,723 | INFO     | *************************************
[2024-06-27 14:59:50] 2024-06-27 21:59:31,723 | INFO     | 
[2024-06-27 14:59:50] 2024-06-27 21:59:31,728 | INFO     | architecture information:
[2024-06-27 14:59:50] 2024-06-27 21:59:31,728 | INFO     | executing command: cat /etc/os-release
[2024-06-27 14:59:50] 2024-06-27 21:59:31,744 | INFO     | cat /etc/os-release:
[2024-06-27 14:59:50] NAME="CentOS Linux"
[2024-06-27 14:59:50] VERSION="7 (Core)"
[2024-06-27 14:59:50] ID="centos"
[2024-06-27 14:59:50] ID_LIKE="rhel fedora"
[2024-06-27 14:59:50] VERSION_ID="7"
[2024-06-27 14:59:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 14:59:50] ANSI_COLOR="0;31"
[2024-06-27 14:59:50] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 14:59:50] HOME_URL="https://www.centos.org/"
[2024-06-27 14:59:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 14:59:50] 
[2024-06-27 14:59:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 14:59:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 14:59:50] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 14:59:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 14:59:50] 
[2024-06-27 14:59:50] 2024-06-27 21:59:31,745 | INFO     | *************************************
[2024-06-27 14:59:50] 2024-06-27 21:59:32,247 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 14:59:50] 2024-06-27 21:59:32,262 | INFO     | sufficient remaining disk space (2151951630336 B)
[2024-06-27 14:59:50] 2024-06-27 21:59:32,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 14:59:50] 2024-06-27 21:59:32,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 14:59:50] 2024-06-27 21:59:32,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:59:50] 2024-06-27 21:59:32,652 | INFO     | aborting loop
[2024-06-27 14:59:50] 2024-06-27 21:59:33,053 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 14:59:50] 2024-06-27 21:59:33,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 14:59:50] 2024-06-27 21:59:33,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 14:59:50] 2024-06-27 21:59:33,222 | INFO     | all data control threads have been joined
[2024-06-27 14:59:50] 2024-06-27 21:59:33,268 | INFO     | [job] retrieve thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:33,394 | INFO     | all payload control threads have been joined
[2024-06-27 14:59:50] 2024-06-27 21:59:33,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 14:59:50] 2024-06-27 21:59:33,657 | INFO     | [job] job monitor thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:33,800 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:33,930 | INFO     | all job control threads have been joined
[2024-06-27 14:59:50] 2024-06-27 21:59:33,997 | INFO     | [job] validate thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:59:50] 2024-06-27 21:59:34,113 | INFO     | [data] copytool_in thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,228 | INFO     | [data] control thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,336 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,395 | INFO     | [payload] control thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,445 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,562 | INFO     | [payload] validate_post thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,642 | INFO     | [payload] failed_post thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,935 | INFO     | [job] control thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:34,996 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 14:59:50] 2024-06-27 21:59:35,060 | INFO     | [job] queue monitor thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:35,571 | INFO     | [data] copytool_out thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:39,002 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:42,976 | INFO     | job.realtimelogging is not enabled
[2024-06-27 14:59:50] 2024-06-27 21:59:43,983 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 14:59:50] 2024-06-27 21:59:44,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949803669312)>', '<ExcThread(monitor, started 139949227636480)>']
[2024-06-27 14:59:50] 2024-06-27 21:59:45,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 14:59:50] 2024-06-27 21:59:45,089 | INFO     | [monitor] control thread has ended
[2024-06-27 14:59:50] 2024-06-27 21:59:49,326 | INFO     | all workflow threads have been joined
[2024-06-27 14:59:50] 2024-06-27 21:59:49,326 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 14:59:50] 2024-06-27 21:59:49,326 | INFO     | traces error code: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:49,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 14:59:50] 2024-06-27 21:59:49,415 [wrapper] ==== pilot stdout END ====
[2024-06-27 14:59:50] 2024-06-27 21:59:49,419 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 14:59:50] 2024-06-27 21:59:49,423 [wrapper] pilotpid: 137708
[2024-06-27 14:59:50] 2024-06-27 21:59:49,427 [wrapper] Pilot exit status: 0
[2024-06-27 14:59:50] 2024-06-27 21:59:49,439 [wrapper] pandaids: 6246251386
[2024-06-27 14:59:50] 2024-06-27 21:59:49,500 [wrapper] cleanup supervisor_pilot   6607 137709
[2024-06-27 14:59:50] 2024-06-27 21:59:49,504 [wrapper] Test setup, not cleaning
[2024-06-27 14:59:50] 2024-06-27 21:59:49,507 [wrapper] ==== wrapper stdout END ====
[2024-06-27 14:59:50] 2024-06-27 21:59:49,511 [wrapper] ==== wrapper stderr END ====
[2024-06-27 14:59:50] 2024-06-27 21:59:49,517 [wrapper] apfmon messages muted
[2024-06-27 14:59:50]  *** Error codes and diagnostics ***
[2024-06-27 14:59:50]     "exeErrorCode": 0,
[2024-06-27 14:59:50]     "exeErrorDiag": "",
[2024-06-27 14:59:50]     "pilotErrorCode": 0,
[2024-06-27 14:59:50]     "pilotErrorDiag": "",
[2024-06-27 14:59:50]  *** Listing of results directory ***
[2024-06-27 14:59:50] total 569464
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc    469766 Jun 27 07:34 pilot3.tar.gz
[2024-06-27 14:59:50] -rwx------ 1 boinc boinc     32220 Jun 27 07:59 runpilot2-wrapper.sh
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc      5654 Jun 27 07:59 queuedata.json
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc       100 Jun 27 13:24 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 14:59:50] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 13:24 run_atlas
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc       105 Jun 27 13:24 job.xml
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc 395837094 Jun 27 13:24 EVNT.34668507._000001.pool.root.1
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc      6628 Jun 27 13:24 init_data.xml
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:24 start_atlas.sh
[2024-06-27 14:59:50] drwxrwx--x 2 boinc boinc      4096 Jun 27 13:24 shared
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc    482502 Jun 27 13:24 input.tar.gz
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc         0 Jun 27 13:24 boinc_lockfile
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc      2592 Jun 27 13:24 pandaJob.out
[2024-06-27 14:59:50] -rw------- 1 boinc boinc       424 Jun 27 13:24 setup.sh.local
[2024-06-27 14:59:50] -rw------- 1 boinc boinc   1036876 Jun 27 13:24 agis_schedconf.cvmfs.json
[2024-06-27 14:59:50] -rw------- 1 boinc boinc         0 Jun 27 13:24 agis_ddmendpoints.agis.ALL.json
[2024-06-27 14:59:50] -rw------- 1 boinc boinc   1321378 Jun 27 13:24 cric_ddmendpoints.json
[2024-06-27 14:59:50] drwx------ 4 boinc boinc      4096 Jun 27 13:24 pilot3
[2024-06-27 14:59:50] -rw------- 1 boinc boinc 181953623 Jun 27 14:58 HITS.40102807._000053.pool.root.1
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc       529 Jun 27 14:58 boinc_task_state.xml
[2024-06-27 14:59:50] -rw------- 1 boinc boinc      1055 Jun 27 14:59 memory_monitor_summary.json
[2024-06-27 14:59:50] -rw------- 1 boinc boinc    374067 Jun 27 14:59 log.40102807._000053.job.log.tgz.1
[2024-06-27 14:59:50] -rw------- 1 boinc boinc      7761 Jun 27 14:59 heartbeat.json
[2024-06-27 14:59:50] -rw------- 1 boinc boinc        95 Jun 27 14:59 pilot_heartbeat.json
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc        27 Jun 27 14:59 wrapper_checkpoint.txt
[2024-06-27 14:59:50] -rw------- 1 boinc boinc      4282 Jun 27 14:59 pilotlog.txt
[2024-06-27 14:59:50] -rw------- 1 boinc boinc    522715 Jun 27 14:59 log.40102807._000053.job.log.1
[2024-06-27 14:59:50] -rw------- 1 boinc boinc       357 Jun 27 14:59 output.list
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc       620 Jun 27 14:59 runtime_log
[2024-06-27 14:59:50] -rw------- 1 boinc boinc    911360 Jun 27 14:59 result.tar.gz
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc     11286 Jun 27 14:59 runtime_log.err
[2024-06-27 14:59:50] -rw------- 1 boinc boinc       654 Jun 27 14:59 MviNDmSm5g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmM8oKDmAELPjn.diag
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc      8192 Jun 27 14:59 boinc_mmap_file
[2024-06-27 14:59:50] -rw-r--r-- 1 boinc boinc     21256 Jun 27 14:59 stderr.txt
[2024-06-27 14:59:50] HITS file was successfully produced:
[2024-06-27 14:59:50] -rw------- 1 boinc boinc 181953623 Jun 27 14:58 shared/HITS.pool.root.1
[2024-06-27 14:59:50]  *** Contents of shared directory: ***
[2024-06-27 14:59:50] total 565644
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc 395837094 Jun 27 13:24 ATLAS.root_0
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:24 start_atlas.sh
[2024-06-27 14:59:50] -rw-r--r-- 2 boinc boinc    482502 Jun 27 13:24 input.tar.gz
[2024-06-27 14:59:50] -rw------- 1 boinc boinc 181953623 Jun 27 14:58 HITS.pool.root.1
[2024-06-27 14:59:50] -rw------- 1 boinc boinc    911360 Jun 27 14:59 result.tar.gz
14:59:52 (134074): run_atlas exited; CPU time 46631.876929
14:59:52 (134074): called boinc_finish(0)

</stderr_txt>
]]>

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