Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-28 14:07:07 (4388): Detected: vboxwrapper 26206
2024-06-28 14:07:07 (4388): Detected: BOINC client v7.22.2
2024-06-28 14:07:08 (4388): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-06-28 14:07:08 (4388): Successfully copied 'init_data.xml' to the shared directory.
2024-06-28 14:07:09 (4388): Create VM. (boinc_bc1a32b546ccbe7d, slot#0)
2024-06-28 14:07:09 (4388): Setting Memory Size for VM. (4800MB)
2024-06-28 14:07:10 (4388): Setting CPU Count for VM. (8)
2024-06-28 14:07:10 (4388): Setting Chipset Options for VM.
2024-06-28 14:07:10 (4388): Setting Graphics Controller Options for VM.
2024-06-28 14:07:11 (4388): Setting Boot Options for VM.
2024-06-28 14:07:11 (4388): Setting Network Configuration for NAT.
2024-06-28 14:07:11 (4388): Enabling VM Network Access.
2024-06-28 14:07:11 (4388): Disabling USB Support for VM.
2024-06-28 14:07:12 (4388): Disabling COM Port Support for VM.
2024-06-28 14:07:12 (4388): Disabling LPT Port Support for VM.
2024-06-28 14:07:12 (4388): Disabling Audio Support for VM.
2024-06-28 14:07:13 (4388): Disabling Clipboard Support for VM.
2024-06-28 14:07:13 (4388): Disabling Drag and Drop Support for VM.
2024-06-28 14:07:13 (4388): Adding storage controller(s) to VM.
2024-06-28 14:07:14 (4388): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-28 14:07:16 (4388): Adding VirtualBox Guest Additions to VM.
2024-06-28 14:07:17 (4388): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-28 14:07:17 (4388): forwarding host port 53516 to guest port 80
2024-06-28 14:07:17 (4388): Enabling remote desktop for VM.
2024-06-28 14:07:17 (4388): Required extension pack not installed, remote desktop not enabled.
2024-06-28 14:07:17 (4388): Enabling shared directory for VM.
2024-06-28 14:07:18 (4388): Starting VM using VBoxManage interface. (boinc_bc1a32b546ccbe7d, slot#0)
2024-06-28 14:07:23 (4388): Successfully started VM. (PID = '23428')
2024-06-28 14:07:23 (4388): Reporting VM Process ID to BOINC.
2024-06-28 14:07:23 (4388): Guest Log: BIOS: VirtualBox 7.0.8
2024-06-28 14:07:23 (4388): Guest Log: CPUID EDX: 0x178bfbff
2024-06-28 14:07:23 (4388): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-28 14:07:23 (4388): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-28 14:07:23 (4388): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-28 14:07:23 (4388): Detected: Web Application Enabled (http://localhost:53516)
2024-06-28 14:07:23 (4388): Preference change detected
2024-06-28 14:07:23 (4388): Setting CPU throttle for VM. (85%)
2024-06-28 14:07:24 (4388): Setting network throttle for VM. (1000KB)
2024-06-28 14:07:24 (4388): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-28 14:07:25 (4388): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-28 14:07:25 (4388): Guest Log: BIOS: Booting from Hard Disk...
2024-06-28 14:07:28 (4388): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-28 14:07:28 (4388): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-28 14:07:28 (4388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-28 14:07:34 (4388): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-28 14:07:34 (4388): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-28 14:07:40 (4388): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000073 main     Log opened 2024-06-28T14:07:38.574533000Z
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000145 main     OS Product: Linux
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000169 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000191 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000212 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000212 main     Process ID: 1365
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000212 main     Package type: LINUX_64BITS_GENERIC
2024-06-28 14:07:40 (4388): Guest Log: 00:00:00.000579 main     5.2.32 r132073 started. Verbose level = 0
2024-06-28 14:07:41 (4388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-28 14:07:41 (4388): Guest Log: [INFO] Mounting shared directory
2024-06-28 14:07:41 (4388): Guest Log: [INFO] Checking for init_data.xml
2024-06-28 14:07:46 (4388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-28 14:07:46 (4388): Guest Log: [INFO] Detected branch: prod
2024-06-28 14:07:46 (4388): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-28 14:07:46 (4388): Guest Log: Copying input files
2024-06-28 14:07:47 (4388): Guest Log: Copied input files into RunAtlas.
2024-06-28 14:07:47 (4388): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-28 14:07:47 (4388): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-28 14:07:47 (4388): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-28 14:07:47 (4388): Guest Log: Further information can be found at the LHC@home message board.
2024-06-28 14:07:50 (4388): Guest Log: 00:00:10.016923 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 807 910 000ns (GuestNow=1 719 572 870 769 222 000 ns GuestLast=1 719 583 658 577 132 000 ns fSetTimeLastLoop=true )
2024-06-28 14:08:48 (4388): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-28 14:08:48 (4388): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-28 14:08:48 (4388): Guest Log: 2.6.3.0 1642 1 32208 134387 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-28 14:08:50 (4388): Guest Log: copied the webapp to /var/www
2024-06-28 14:08:50 (4388): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-28 14:08:50 (4388): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-28 14:08:51 (4388): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-28 14:08:51 (4388): Guest Log:  *** Starting ATLAS job. (PandaID=6246251153 taskID=40102859) ***
2024-06-28 15:47:26 (4388): Status Report: Elapsed Time: '6000.000000'
2024-06-28 15:47:26 (4388): Status Report: CPU Time: '32695.421875'
2024-06-28 16:38:50 (4388): Guest Log:  *** Job finished ***
2024-06-28 16:38:50 (4388): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:34,467 | INFO     | [data] queue_monitor thread has finished
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:40,632 | INFO     | job.realtimelogging is not enabled
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:41,634 | INFO     | [payload] run_realtimelog thread has finished
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:43,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114941777728)>', '<ExcThread(monitor, started 140113845679872)>']
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:43,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:43,372 | INFO     | [monitor] control thread has ended
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,228 | INFO     | all workflow threads have been joined
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,228 | INFO     | end of generic workflow (traces error code: 0)
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,228 | INFO     | traces error code: 0
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,374 [wrapper] ==== pilot stdout END ====
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,377 [wrapper] ==== wrapper stdout RESUME ====
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,379 [wrapper] pilotpid: 6076
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,381 [wrapper] Pilot exit status: 0
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,683 [wrapper] pandaids: 6246251153
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,698 [wrapper] cleanup supervisor_pilot  7089 6077
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,700 [wrapper] Test setup, not cleaning
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,704 [wrapper] ==== wrapper stdout END ====
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,706 [wrapper] ==== wrapper stderr END ====
2024-06-28 16:38:50 (4388): Guest Log: 2024-06-28 13:38:48,710 [wrapper] apfmon messages muted
2024-06-28 16:38:50 (4388): Guest Log:  *** Error codes and diagnostics ***
2024-06-28 16:38:50 (4388): Guest Log:     "exeErrorCode": 0,
2024-06-28 16:38:50 (4388): Guest Log:     "exeErrorDiag": "",
2024-06-28 16:38:50 (4388): Guest Log:     "pilotErrorCode": 0,
2024-06-28 16:38:50 (4388): Guest Log:     "pilotErrorDiag": "",
2024-06-28 16:38:50 (4388): Guest Log:  *** Listing of results directory ***
2024-06-28 16:38:50 (4388): Guest Log: total 173616
2024-06-28 16:38:50 (4388): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 14:34 pilot3.tar.gz
2024-06-28 16:38:50 (4388): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 14:55 runpilot2-wrapper.sh
2024-06-28 16:38:50 (4388): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 14:55 queuedata.json
2024-06-28 16:38:50 (4388): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 28 11:07 start_atlas.sh
2024-06-28 16:38:50 (4388): Guest Log: -rwxr-xr-x. 1 atlas atlas    482493 Jun 28 11:07 input.tar.gz
2024-06-28 16:38:50 (4388): Guest Log: -rwxr-xr-x. 1 atlas atlas      9263 Jun 28 11:07 init_data.xml
2024-06-28 16:38:50 (4388): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 28 11:07 EVNT.34668832._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-28 16:38:50 (4388): Guest Log: -rw-r--r--. 1 atlas atlas      2594 Jun 28 11:08 pandaJob.out
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas       424 Jun 28 11:09 setup.sh.local
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas   1036145 Jun 28 11:11 agis_schedconf.cvmfs.json
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas         0 Jun 28 11:11 agis_ddmendpoints.agis.ALL.json
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas   1321378 Jun 28 11:11 cric_ddmendpoints.json
2024-06-28 16:38:50 (4388): Guest Log: drwx------. 4 atlas atlas      4096 Jun 28 11:12 pilot3
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas        95 Jun 28 13:37 pilot_heartbeat.json
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas 172277429 Jun 28 13:37 HITS.40102859._000052.pool.root.1
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas      1039 Jun 28 13:38 memory_monitor_summary.json
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas    330283 Jun 28 13:38 log.40102859._000052.job.log.tgz.1
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas      7695 Jun 28 13:38 heartbeat.json
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 28 13:38 pilotlog.txt
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas    687903 Jun 28 13:38 log.40102859._000052.job.log.1
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas       357 Jun 28 13:38 output.list
2024-06-28 16:38:50 (4388): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 28 13:38 runtime_log
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas   1034240 Jun 28 13:38 result.tar.gz
2024-06-28 16:38:50 (4388): Guest Log: -rw-r--r--. 1 atlas atlas     10900 Jun 28 13:38 runtime_log.err
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas       635 Jun 28 13:38 HYbLDmYi5g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmz7oKDm7ajrYm.diag
2024-06-28 16:38:50 (4388): Guest Log: Looking for outputfile HITS.40102859._000052.pool.root.1
2024-06-28 16:38:50 (4388): Guest Log: HITS file was successfully produced
2024-06-28 16:38:50 (4388): Guest Log: -rw-------. 1 atlas atlas 172277429 Jun 28 13:37 /home/atlas/RunAtlas/HITS.40102859._000052.pool.root.1
2024-06-28 16:38:51 (4388): Guest Log: Successfully finished the ATLAS job!
2024-06-28 16:38:51 (4388): Guest Log: Copying the results back to the shared directory!
2024-06-28 16:38:51 (4388): Guest Log:  *** Contents of shared directory: ***
2024-06-28 16:38:51 (4388): Guest Log: total 552540
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root 391970745 Jun 28 11:07 ATLAS.root_0
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root 172277429 Jun 28 13:38 HITS.pool.root.1
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root      9263 Jun 28 11:07 init_data.xml
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root    482493 Jun 27 15:03 input.tar.gz
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root   1034240 Jun 28  2024 result.tar.gz
2024-06-28 16:38:51 (4388): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 15:03 start_atlas.sh
2024-06-28 16:38:51 (4388): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-28 16:38:51 (4388): VM Completion File Detected.
2024-06-28 16:38:51 (4388): Powering off VM.
2024-06-28 16:38:51 (4388): Successfully stopped VM.
2024-06-28 16:38:51 (4388): Deregistering VM. (boinc_bc1a32b546ccbe7d, slot#0)
2024-06-28 16:38:51 (4388): Removing network bandwidth throttle group from VM.
2024-06-28 16:38:52 (4388): Removing VM from VirtualBox.
16:38:57 (4388): called boinc_finish(0)

</stderr_txt>
]]>

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