Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:23 (1246466): wrapper (7.7.26015): starting
17:25:23 (1246466): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 17:25:23] Arguments: --nthreads 4
[2024-06-27 17:25:23] Threads: 4
[2024-06-27 17:25:23] Checking for CVMFS
[2024-06-27 17:25:23] No cvmfs_config command found, will try listing directly
[2024-06-27 17:25:23] CVMFS is ok
[2024-06-27 17:25:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 17:25:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 17:25:23] Further information can be found at the LHC@home message board.
[2024-06-27 17:25:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 17:25:23] Checking for apptainer binary...
[2024-06-27 17:25:23] which: no apptainer in ((null))
[2024-06-27 17:25:23] apptainer is not installed, using version from CVMFS
[2024-06-27 17:25:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 17:25:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2024-06-27 17:25:24] apptainer works
[2024-06-27 17:25:24] Set ATHENA_PROC_NUMBER=4
[2024-06-27 17:25:24] Set ATHENA_CORE_NUMBER=4
[2024-06-27 17:25:24] Starting ATLAS job with PandaID=6246226449
[2024-06-27 17:25:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot4/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 20:40:11]  *** The last 200 lines of the pilot log: ***
[2024-06-27 20:40:11] 2024-06-27 18:39:51,256 | INFO     | current chi2=1.6141473521305074 (change=61.23205577025388 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,256 | INFO     | model: linear, x: [1719502563.0, 1719502624.0, 1719502685.0, 1719502746.0, 1719502807.0, 1719502868.0, 1719502929.0, 1719502990.0, 1719503051.0, 1719503112.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,256 | INFO     | sum of square deviations: 1838657730.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | sum of deviations: 11151069010.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | mean x: 1719508053.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | mean y: 2354165.806629834
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | -- intersect: -10426097334.111052
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | intersect: -10426097334.111052
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | chi2: 0.0852828817652944
[2024-06-27 20:40:11] 2024-06-27 18:39:51,257 | INFO     | current chi2=0.0852828817652944 (change=94.71653677387447 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,258 | INFO     | model: linear, x: [1719502868.0, 1719502929.0, 1719502990.0, 1719503051.0, 1719503112.0, 1719503173.0, 1719503234.0, 1719503295.0, 1719503356.0, 1719503417.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,258 | INFO     | sum of square deviations: 1690450300.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,258 | INFO     | sum of deviations: 4463897253.5
[2024-06-27 20:40:11] 2024-06-27 18:39:51,258 | INFO     | mean x: 1719508205.5
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | mean y: 2360962.4488636362
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | -- intersect: -4538268215.41112
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | intersect: -4538268215.41112
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | chi2: 0.0007158084326248113
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | current chi2=0.0007158084326248113 (change=99.1606657540082 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | model: linear, x: [1719503173.0, 1719503234.0, 1719503295.0, 1719503356.0, 1719503417.0, 1719503478.0, 1719503539.0, 1719503600.0, 1719503661.0, 1719503722.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,259 | INFO     | sum of square deviations: 1550429070.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | sum of deviations: 3529791351.9999967
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | mean x: 1719508358.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | mean y: 2361978.239766082
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | -- intersect: -3912364499.2250266
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | intersect: -3912364499.2250266
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | chi2: 0.0002543888108143345
[2024-06-27 20:40:11] 2024-06-27 18:39:51,260 | INFO     | current chi2=0.0002543888108143345 (change=64.46132802857443 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | model: linear, x: [1719503478.0, 1719503539.0, 1719503600.0, 1719503661.0, 1719503722.0, 1719503783.0, 1719503844.0, 1719503905.0, 1719503966.0, 1719504027.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | sum of square deviations: 1418361477.5
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | sum of deviations: 3014558573.0000005
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | mean x: 1719508510.5
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | mean y: 2362572.361445783
[2024-06-27 20:40:11] 2024-06-27 18:39:51,261 | INFO     | -- intersect: -3652248190.7641597
[2024-06-27 20:40:11] 2024-06-27 18:39:51,262 | INFO     | intersect: -3652248190.7641597
[2024-06-27 20:40:11] 2024-06-27 18:39:51,262 | INFO     | chi2: 0.0001816598700752645
[2024-06-27 20:40:11] 2024-06-27 18:39:51,262 | INFO     | current chi2=0.0001816598700752645 (change=28.589677551561483 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,262 | INFO     | model: linear, x: [1719503783.0, 1719503844.0, 1719503905.0, 1719503966.0, 1719504027.0, 1719504088.0, 1719504149.0, 1719504210.0, 1719504271.0, 1719504332.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,262 | INFO     | sum of square deviations: 1294014960.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | sum of deviations: 2645471973.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | mean x: 1719508663.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | mean y: 2363025.366459627
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | -- intersect: -3512984258.7926054
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | intersect: -3512984258.7926054
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | chi2: 0.00016123934177912364
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | current chi2=0.00016123934177912364 (change=11.24107833374554 %)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | left removable region: 60
[2024-06-27 20:40:11] 2024-06-27 18:39:51,263 | INFO     | model: linear, x: [1719505613.0, 1719505674.0, 1719505735.0, 1719505796.0, 1719505857.0, 1719505918.0, 1719505979.0, 1719506040.0, 1719506101.0, 1719506162.0, 1719
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | sum of square deviations: 605592750.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | sum of deviations: 977332240.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | mean x: 1719509395.0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | mean y: 2364864.688
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | -- intersect: -2772655095.0397124
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | intersect: -2772655095.0397124
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | chi2: 5.7991455096146404e-05
[2024-06-27 20:40:11] 2024-06-27 18:39:51,264 | INFO     | -- intersect: -2772655095.0397124
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | current memory leak: 1.61 B/s (using 125 data points, chi2=0.00)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | ..............................
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . Timing measurements:
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . get job = 0 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . initial setup = 1 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . payload setup = 3 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . stage-in = 0 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . payload execution = 11630 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . stage-out = 0 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | . log creation = 0 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,265 | INFO     | ..............................
[2024-06-27 20:40:11] 2024-06-27 18:39:51,322 | INFO     | 
[2024-06-27 20:40:11] 2024-06-27 18:39:51,325 | WARNING  | process 1264393 is no longer using CPU - aborting
[2024-06-27 20:40:11] 2024-06-27 18:39:51,325 | INFO     | job summary report
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | aborting job monitoring since job object (job id=6246226449) has expired
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | --------------------------------------------------
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | PanDA job id: 6246226449
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | task id: 40102763
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | errors: (none)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | pilot state: finished 
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | transexitcode: 0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | exeerrorcode: 0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | exeerrordiag: 
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | exitcode: 0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | exitmsg: OK
[2024-06-27 20:40:11] 2024-06-27 18:39:51,326 | INFO     | cpuconsumptiontime: 43606 s
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | nevents: 400
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | neventsw: 0
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | pid: 1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | pgrp: 1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | corecount: 4
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | event service: False
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | sizes: {0: 2387013, 1: 2387013, 4: 2387247, 11: 2387275, 11637: 2416813, 11638: 2425793, 11641: 2425977, 11646: 2426147}
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | --------------------------------------------------
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | 
[2024-06-27 20:40:11] 2024-06-27 18:39:51,327 | INFO     | executing command: ls -lF /scratch/boinc/var/slot4/slots/1
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 20:40:11] 2024-06-27 18:39:51,341 | INFO     | job 6246226449 has completed (purged errors)
[2024-06-27 20:40:11] 2024-06-27 18:39:51,342 | INFO     | overall cleanup function is called
[2024-06-27 20:40:11] 2024-06-27 18:39:52,348 | INFO     | --- collectZombieJob: --- 10, [1264393]
[2024-06-27 20:40:11] 2024-06-27 18:39:52,348 | INFO     | zombie collector waiting for pid 1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:52,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 20:40:11] 2024-06-27 18:39:53,353 | INFO     | collected zombie processes
[2024-06-27 20:40:11] 2024-06-27 18:39:53,353 | INFO     | will now attempt to kill all subprocesses of pid=1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:53,436 | INFO     | process IDs to be killed: [1264393] (in reverse order)
[2024-06-27 20:40:11] 2024-06-27 18:39:53,490 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 20:40:11] 2024-06-27 18:39:53,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 20:40:11] 2024-06-27 18:39:53,494 | INFO     | did not find any defunct processes belonging to 1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:53,497 | INFO     | did not find any defunct processes belonging to 1264393
[2024-06-27 20:40:11] 2024-06-27 18:39:53,497 | INFO     | ready for new job
[2024-06-27 20:40:11] 2024-06-27 18:39:53,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 20:40:11] 2024-06-27 18:39:53,499 | INFO     | *************************************
[2024-06-27 20:40:11] 2024-06-27 18:39:53,499 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 20:40:11] 2024-06-27 18:39:53,499 | INFO     | *************************************
[2024-06-27 20:40:11] 2024-06-27 18:39:53,499 | INFO     | 
[2024-06-27 20:40:11] 2024-06-27 18:39:53,501 | INFO     | architecture information:
[2024-06-27 20:40:11] 2024-06-27 18:39:53,501 | INFO     | executing command: cat /etc/os-release
[2024-06-27 20:40:11] 2024-06-27 18:39:53,511 | INFO     | cat /etc/os-release:
[2024-06-27 20:40:11] NAME="CentOS Linux"
[2024-06-27 20:40:11] VERSION="7 (Core)"
[2024-06-27 20:40:11] ID="centos"
[2024-06-27 20:40:11] ID_LIKE="rhel fedora"
[2024-06-27 20:40:11] VERSION_ID="7"
[2024-06-27 20:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 20:40:11] ANSI_COLOR="0;31"
[2024-06-27 20:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 20:40:11] HOME_URL="https://www.centos.org/"
[2024-06-27 20:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 20:40:11] 
[2024-06-27 20:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 20:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 20:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 20:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 20:40:11] 
[2024-06-27 20:40:11] 2024-06-27 18:39:53,512 | INFO     | *************************************
[2024-06-27 20:40:11] 2024-06-27 18:39:54,014 | INFO     | executing command: df -mP /scratch/boinc/var/slot4/slots/1
[2024-06-27 20:40:11] 2024-06-27 18:39:54,027 | INFO     | sufficient remaining disk space (1678288879616 B)
[2024-06-27 20:40:11] 2024-06-27 18:39:54,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 20:40:11] 2024-06-27 18:39:54,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 20:40:11] 2024-06-27 18:39:54,139 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 20:40:11] 2024-06-27 18:39:54,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 20:40:11] 2024-06-27 18:39:54,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 20:40:11] 2024-06-27 18:39:54,434 | INFO     | all job control threads have been joined
[2024-06-27 20:40:11] 2024-06-27 18:39:54,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 20:40:11] 2024-06-27 18:39:54,780 | INFO     | all data control threads have been joined
[2024-06-27 20:40:11] 2024-06-27 18:39:54,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 20:40:11] 2024-06-27 18:39:54,833 | INFO     | aborting loop
[2024-06-27 20:40:11] 2024-06-27 18:39:55,033 | INFO     | [job] retrieve thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,151 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,291 | INFO     | all payload control threads have been joined
[2024-06-27 20:40:11] 2024-06-27 18:39:55,426 | INFO     | [job] validate thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,439 | INFO     | [job] control thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,443 | INFO     | [payload] validate_post thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,600 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,666 | INFO     | [data] copytool_in thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,785 | INFO     | [data] control thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,801 | INFO     | [payload] failed_post thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:55,838 | INFO     | [job] job monitor thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:56,173 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:56,297 | INFO     | [payload] control thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:56,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 20:40:11] 2024-06-27 18:39:56,491 | INFO     | [data] copytool_out thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:39:56,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 20:40:11] 2024-06-27 18:39:57,337 | INFO     | [job] queue monitor thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:40:00,950 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:40:04,786 | INFO     | job.realtimelogging is not enabled
[2024-06-27 20:40:11] 2024-06-27 18:40:05,791 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 20:40:11] 2024-06-27 18:40:06,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47158403621952)>', '<ExcThread(monitor, started 47158592300800)>']
[2024-06-27 20:40:11] 2024-06-27 18:40:06,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 20:40:11] 2024-06-27 18:40:06,187 | INFO     | [monitor] control thread has ended
[2024-06-27 20:40:11] 2024-06-27 18:40:11,110 | INFO     | all workflow threads have been joined
[2024-06-27 20:40:11] 2024-06-27 18:40:11,110 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 20:40:11] 2024-06-27 18:40:11,110 | INFO     | traces error code: 0
[2024-06-27 20:40:11] 2024-06-27 18:40:11,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 20:40:11] 2024-06-27 18:40:11,202 [wrapper] ==== pilot stdout END ====
[2024-06-27 20:40:11] 2024-06-27 18:40:11,205 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 20:40:11] 2024-06-27 18:40:11,207 [wrapper] pilotpid: 1250513
[2024-06-27 20:40:11] 2024-06-27 18:40:11,209 [wrapper] Pilot exit status: 0
[2024-06-27 20:40:11] 2024-06-27 18:40:11,216 [wrapper] pandaids: 6246226449
[2024-06-27 20:40:11] 2024-06-27 18:40:11,266 [wrapper] cleanup supervisor_pilot 1500722 1250514
[2024-06-27 20:40:11] 2024-06-27 18:40:11,269 [wrapper] Test setup, not cleaning
[2024-06-27 20:40:11] 2024-06-27 18:40:11,271 [wrapper] ==== wrapper stdout END ====
[2024-06-27 20:40:11] 2024-06-27 18:40:11,274 [wrapper] ==== wrapper stderr END ====
[2024-06-27 20:40:11] 2024-06-27 18:40:11,278 [wrapper] apfmon messages muted
[2024-06-27 20:40:11]  *** Error codes and diagnostics ***
[2024-06-27 20:40:11]     "exeErrorCode": 0,
[2024-06-27 20:40:11]     "exeErrorDiag": "",
[2024-06-27 20:40:11]     "pilotErrorCode": 0,
[2024-06-27 20:40:11]     "pilotErrorDiag": "",
[2024-06-27 20:40:11]  *** Listing of results directory ***
[2024-06-27 20:40:11] total 551580
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc    469766 Jun 27 16:34 pilot3.tar.gz
[2024-06-27 20:40:11] -rwx------ 1 boinc boinc     32220 Jun 27 16:37 runpilot2-wrapper.sh
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc      5654 Jun 27 16:37 queuedata.json
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc       100 Jun 27 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 20:40:11] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 16:56 run_atlas
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc       105 Jun 27 16:56 job.xml
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc 391481522 Jun 27 17:25 EVNT.34668127._000003.pool.root.1
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc      6452 Jun 27 17:25 init_data.xml
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc     17537 Jun 27 17:25 start_atlas.sh
[2024-06-27 20:40:11] drwxrwx--x 2 boinc boinc      4096 Jun 27 17:25 shared
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc    482501 Jun 27 17:25 input.tar.gz
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc         0 Jun 27 17:25 boinc_lockfile
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc      2592 Jun 27 17:25 pandaJob.out
[2024-06-27 20:40:11] -rw------- 1 boinc boinc       424 Jun 27 17:25 setup.sh.local
[2024-06-27 20:40:11] -rw------- 1 boinc boinc   1034827 Jun 27 17:25 agis_schedconf.cvmfs.json
[2024-06-27 20:40:11] -rw------- 1 boinc boinc   1321363 Jun 27 17:25 cric_ddmendpoints.json
[2024-06-27 20:40:11] drwx------ 4 boinc boinc      4096 Jun 27 17:25 pilot3
[2024-06-27 20:40:11] -rw------- 1 boinc boinc        95 Jun 27 20:39 pilot_heartbeat.json
[2024-06-27 20:40:11] -rw------- 1 boinc boinc 166737140 Jun 27 20:39 HITS.40102763._000055.pool.root.1
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc       530 Jun 27 20:39 boinc_task_state.xml
[2024-06-27 20:40:11] -rw------- 1 boinc boinc      1036 Jun 27 20:39 memory_monitor_summary.json
[2024-06-27 20:40:11] -rw------- 1 boinc boinc         0 Jun 27 20:39 agis_ddmendpoints.agis.ALL.json
[2024-06-27 20:40:11] -rw------- 1 boinc boinc    312945 Jun 27 20:39 log.40102763._000055.job.log.tgz.1
[2024-06-27 20:40:11] -rw------- 1 boinc boinc      7740 Jun 27 20:39 heartbeat.json
[2024-06-27 20:40:11] -rw------- 1 boinc boinc      4293 Jun 27 20:40 pilotlog.txt
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc        28 Jun 27 20:40 wrapper_checkpoint.txt
[2024-06-27 20:40:11] -rw------- 1 boinc boinc   1212165 Jun 27 20:40 log.40102763._000055.job.log.1
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc      8192 Jun 27 20:40 boinc_mmap_file
[2024-06-27 20:40:11] -rw------- 1 boinc boinc       357 Jun 27 20:40 output.list
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc       620 Jun 27 20:40 runtime_log
[2024-06-27 20:40:11] -rw------- 1 boinc boinc   1546240 Jun 27 20:40 result.tar.gz
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc     11391 Jun 27 20:40 runtime_log.err
[2024-06-27 20:40:11] -rw------- 1 boinc boinc       652 Jun 27 20:40 CD5NDmUQ5g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmMOZKDmRSIewm.diag
[2024-06-27 20:40:11] -rw-r--r-- 1 boinc boinc     21403 Jun 27 20:40 stderr.txt
[2024-06-27 20:40:11] HITS file was successfully produced:
[2024-06-27 20:40:11] -rw------- 1 boinc boinc 166737140 Jun 27 20:39 shared/HITS.pool.root.1
[2024-06-27 20:40:11]  *** Contents of shared directory: ***
[2024-06-27 20:40:11] total 547152
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc 391481522 Jun 27 17:25 ATLAS.root_0
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc     17537 Jun 27 17:25 start_atlas.sh
[2024-06-27 20:40:11] -rw-r--r-- 2 boinc boinc    482501 Jun 27 17:25 input.tar.gz
[2024-06-27 20:40:11] -rw------- 1 boinc boinc 166737140 Jun 27 20:39 HITS.pool.root.1
[2024-06-27 20:40:11] -rw------- 1 boinc boinc   1546240 Jun 27 20:40 result.tar.gz
20:40:13 (1246466): run_atlas exited; CPU time 43472.385122
20:40:13 (1246466): called boinc_finish(0)

</stderr_txt>
]]>

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