Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:53:45 (1112372): wrapper (7.7.26015): starting
02:53:45 (1112372): wrapper: running run_atlas (--nthreads 4)
[2024-06-28 02:53:45] Arguments: --nthreads 4
[2024-06-28 02:53:45] Threads: 4
[2024-06-28 02:53:45] Checking for CVMFS
[2024-06-28 02:53:45] No cvmfs_config command found, will try listing directly
[2024-06-28 02:53:45] CVMFS is ok
[2024-06-28 02:53:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-28 02:53:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-28 02:53:45] Further information can be found at the LHC@home message board.
[2024-06-28 02:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-28 02:53:45] Checking for apptainer binary...
[2024-06-28 02:53:45] which: no apptainer in ((null))
[2024-06-28 02:53:45] apptainer is not installed, using version from CVMFS
[2024-06-28 02:53:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-28 02:53:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2024-06-28 02:53:46] apptainer works
[2024-06-28 02:53:46] Set ATHENA_PROC_NUMBER=4
[2024-06-28 02:53:46] Set ATHENA_CORE_NUMBER=4
[2024-06-28 02:53:46] Starting ATLAS job with PandaID=6246093678
[2024-06-28 02:53:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-28 07:25:08]  *** The last 200 lines of the pilot log: ***
[2024-06-28 07:25:08] 2024-06-28 05:24:47,163 | INFO     | model: linear, x: [1719536359.0, 1719536420.0, 1719536481.0, 1719536542.0, 1719536603.0, 1719536664.0, 1719536725.0, 1719536786.0, 1719536847.0, 1719536908.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,163 | INFO     | sum of square deviations: 5513070810.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,164 | INFO     | sum of deviations: 46988127309.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,164 | INFO     | mean x: 1719544289.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | mean y: 2318163.6896551726
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | -- intersect: -14653427925.846947
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | intersect: -14653427925.846947
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | chi2: 1.0399083762179873
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | current chi2=1.0399083762179873 (change=66.34165113332122 %)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | model: linear, x: [1719536664.0, 1719536725.0, 1719536786.0, 1719536847.0, 1719536908.0, 1719536969.0, 1719537030.0, 1719537091.0, 1719537152.0, 1719537213.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,165 | INFO     | sum of square deviations: 5202255680.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,166 | INFO     | sum of deviations: 5905507478.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | mean x: 1719544441.5
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | mean y: 2338320.984375
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | -- intersect: -1949657732.779669
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | intersect: -1949657732.779669
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | chi2: 0.04543268405853732
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | current chi2=0.04543268405853732 (change=95.63108778642882 %)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | model: linear, x: [1719536969.0, 1719537030.0, 1719537091.0, 1719537152.0, 1719537213.0, 1719537274.0, 1719537335.0, 1719537396.0, 1719537457.0, 1719537518.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,167 | INFO     | sum of square deviations: 4903347750.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,168 | INFO     | sum of deviations: 6063603740.000003
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | mean x: 1719544594.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | mean y: 2338214.22310757
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | -- intersect: -2124094085.275778
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | intersect: -2124094085.275778
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | chi2: 0.026303583407818146
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | current chi2=0.026303583407818146 (change=42.10427151095115 %)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | model: linear, x: [1719537274.0, 1719537335.0, 1719537396.0, 1719537457.0, 1719537518.0, 1719537579.0, 1719537640.0, 1719537701.0, 1719537762.0, 1719537823.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,169 | INFO     | sum of square deviations: 4616114457.5
[2024-06-28 07:25:08] 2024-06-28 05:24:47,170 | INFO     | sum of deviations: 11484822275.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | mean x: 1719544746.5
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | mean y: 2335344.162601626
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | -- intersect: -4275865725.0019464
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | intersect: -4275865725.0019464
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | chi2: 0.001920495577703886
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | current chi2=0.001920495577703886 (change=92.69873025310665 %)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | model: linear, x: [1719537579.0, 1719537640.0, 1719537701.0, 1719537762.0, 1719537823.0, 1719537884.0, 1719537945.0, 1719538006.0, 1719538067.0, 1719538128.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,171 | INFO     | sum of square deviations: 4340323240.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,172 | INFO     | sum of deviations: 10007476146.000002
[2024-06-28 07:25:08] 2024-06-28 05:24:47,172 | INFO     | mean x: 1719544899.0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | mean y: 2336160.323651452
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | -- intersect: -3962415681.227782
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | intersect: -3962415681.227782
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | chi2: 0.0014614796480830951
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | current chi2=0.0014614796480830951 (change=23.900910522771575 %)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | left removable region: 50
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | model: linear, x: [1719539104.0, 1719539165.0, 1719539226.0, 1719539287.0, 1719539348.0, 1719539409.0, 1719539470.0, 1719539531.0, 1719539592.0, 1719539653.0, 1719
[2024-06-28 07:25:08] 2024-06-28 05:24:47,173 | INFO     | sum of square deviations: 2871616632.5
[2024-06-28 07:25:08] 2024-06-28 05:24:47,174 | INFO     | sum of deviations: 4956443126.000001
[2024-06-28 07:25:08] 2024-06-28 05:24:47,174 | INFO     | mean x: 1719545478.5
[2024-06-28 07:25:08] 2024-06-28 05:24:47,174 | INFO     | mean y: 2338949.619047619
[2024-06-28 07:25:08] 2024-06-28 05:24:47,174 | INFO     | -- intersect: -2965616198.118002
[2024-06-28 07:25:08] 2024-06-28 05:24:47,174 | INFO     | intersect: -2965616198.118002
[2024-06-28 07:25:08] 2024-06-28 05:24:47,175 | INFO     | chi2: 0.0005860493871064389
[2024-06-28 07:25:08] 2024-06-28 05:24:47,175 | INFO     | -- intersect: -2965616198.118002
[2024-06-28 07:25:08] 2024-06-28 05:24:47,175 | INFO     | current memory leak: 1.73 B/s (using 210 data points, chi2=0.00)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,175 | INFO     | ..............................
[2024-06-28 07:25:08] 2024-06-28 05:24:47,175 | INFO     | . Timing measurements:
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . get job = 0 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . initial setup = 1 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . payload setup = 3 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . stage-in = 0 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . payload execution = 16225 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . stage-out = 0 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | . log creation = 0 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,176 | INFO     | ..............................
[2024-06-28 07:25:08] 2024-06-28 05:24:47,233 | INFO     | 
[2024-06-28 07:25:08] 2024-06-28 05:24:47,236 | WARNING  | process 1122891 is no longer using CPU - aborting
[2024-06-28 07:25:08] 2024-06-28 05:24:47,236 | INFO     | job summary report
[2024-06-28 07:25:08] 2024-06-28 05:24:47,236 | INFO     | aborting job monitoring since job object (job id=6246093678) has expired
[2024-06-28 07:25:08] 2024-06-28 05:24:47,236 | INFO     | --------------------------------------------------
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | PanDA job id: 6246093678
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | task id: 40102872
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | errors: (none)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | pilot state: finished 
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | transexitcode: 0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,237 | INFO     | exeerrorcode: 0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | exeerrordiag: 
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | exitcode: 0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | exitmsg: OK
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | cpuconsumptiontime: 61804 s
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | nevents: 400
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | neventsw: 0
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | pid: 1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:47,238 | INFO     | pgrp: 1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | corecount: 4
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | event service: False
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | sizes: {0: 2387038, 3: 2387244, 11: 2387272, 16232: 2419004, 16233: 2427986, 16235: 2428042, 16241: 2428340}
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | --------------------------------------------------
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | 
[2024-06-28 07:25:08] 2024-06-28 05:24:47,239 | INFO     | executing command: ls -lF /scratch/boinc/var/slot12/slots/1
[2024-06-28 07:25:08] 2024-06-28 05:24:47,255 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,255 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,255 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,257 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,257 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-28 07:25:08] 2024-06-28 05:24:47,257 | INFO     | job 6246093678 has completed (purged errors)
[2024-06-28 07:25:08] 2024-06-28 05:24:47,257 | INFO     | overall cleanup function is called
[2024-06-28 07:25:08] 2024-06-28 05:24:48,263 | INFO     | --- collectZombieJob: --- 10, [1122891]
[2024-06-28 07:25:08] 2024-06-28 05:24:48,264 | INFO     | zombie collector waiting for pid 1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:48,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-28 07:25:08] 2024-06-28 05:24:49,269 | INFO     | collected zombie processes
[2024-06-28 07:25:08] 2024-06-28 05:24:49,269 | INFO     | will now attempt to kill all subprocesses of pid=1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:49,361 | INFO     | process IDs to be killed: [1122891] (in reverse order)
[2024-06-28 07:25:08] 2024-06-28 05:24:49,426 | WARNING  | found no corresponding commands to process id(s)
[2024-06-28 07:25:08] 2024-06-28 05:24:49,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-28 07:25:08] 2024-06-28 05:24:49,430 | INFO     | did not find any defunct processes belonging to 1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:49,433 | INFO     | did not find any defunct processes belonging to 1122891
[2024-06-28 07:25:08] 2024-06-28 05:24:49,433 | INFO     | ready for new job
[2024-06-28 07:25:08] 2024-06-28 05:24:49,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-28 07:25:08] 2024-06-28 05:24:49,435 | INFO     | *************************************
[2024-06-28 07:25:08] 2024-06-28 05:24:49,435 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-28 07:25:08] 2024-06-28 05:24:49,435 | INFO     | *************************************
[2024-06-28 07:25:08] 2024-06-28 05:24:49,435 | INFO     | 
[2024-06-28 07:25:08] 2024-06-28 05:24:49,436 | INFO     | architecture information:
[2024-06-28 07:25:08] 2024-06-28 05:24:49,437 | INFO     | executing command: cat /etc/os-release
[2024-06-28 07:25:08] 2024-06-28 05:24:49,448 | INFO     | cat /etc/os-release:
[2024-06-28 07:25:08] NAME="CentOS Linux"
[2024-06-28 07:25:08] VERSION="7 (Core)"
[2024-06-28 07:25:08] ID="centos"
[2024-06-28 07:25:08] ID_LIKE="rhel fedora"
[2024-06-28 07:25:08] VERSION_ID="7"
[2024-06-28 07:25:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-28 07:25:08] ANSI_COLOR="0;31"
[2024-06-28 07:25:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-28 07:25:08] HOME_URL="https://www.centos.org/"
[2024-06-28 07:25:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-28 07:25:08] 
[2024-06-28 07:25:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-28 07:25:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-28 07:25:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-28 07:25:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-28 07:25:08] 
[2024-06-28 07:25:08] 2024-06-28 05:24:49,448 | INFO     | *************************************
[2024-06-28 07:25:08] 2024-06-28 05:24:49,951 | INFO     | executing command: df -mP /scratch/boinc/var/slot12/slots/1
[2024-06-28 07:25:08] 2024-06-28 05:24:49,969 | INFO     | sufficient remaining disk space (1689795952640 B)
[2024-06-28 07:25:08] 2024-06-28 05:24:49,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-28 07:25:08] 2024-06-28 05:24:49,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-28 07:25:08] 2024-06-28 05:24:49,971 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-28 07:25:08] 2024-06-28 05:24:49,971 | INFO     | found 0 job(s) in 20 queues
[2024-06-28 07:25:08] 2024-06-28 05:24:49,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-28 07:25:08] 2024-06-28 05:24:49,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-28 07:25:08] 2024-06-28 05:24:50,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-28 07:25:08] 2024-06-28 05:24:50,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-28 07:25:08] 2024-06-28 05:24:50,745 | INFO     | aborting loop
[2024-06-28 07:25:08] 2024-06-28 05:24:50,846 | INFO     | all data control threads have been joined
[2024-06-28 07:25:08] 2024-06-28 05:24:50,976 | INFO     | [job] retrieve thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:50,993 | INFO     | [payload] validate_pre thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,010 | INFO     | [data] copytool_in thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,100 | INFO     | [job] create_data_payload thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,205 | INFO     | [payload] validate_post thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,300 | INFO     | all job control threads have been joined
[2024-06-28 07:25:08] 2024-06-28 05:24:51,301 | INFO     | all payload control threads have been joined
[2024-06-28 07:25:08] 2024-06-28 05:24:51,750 | INFO     | [job] job monitor thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,802 | INFO     | [payload] execute_payloads thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:51,848 | INFO     | [data] control thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,222 | INFO     | [payload] failed_post thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-28 07:25:08] 2024-06-28 05:24:52,304 | INFO     | [payload] control thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,306 | INFO     | [job] control thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,307 | INFO     | [job] validate thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,337 | INFO     | [data] copytool_out thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:52,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-28 07:25:08] 2024-06-28 05:24:53,249 | INFO     | [job] queue monitor thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:24:56,647 | INFO     | [data] queue_monitor thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:25:00,341 | INFO     | job.realtimelogging is not enabled
[2024-06-28 07:25:08] 2024-06-28 05:25:01,347 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-28 07:25:08] 2024-06-28 05:25:02,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46958491423808)>', '<ExcThread(monitor, started 46958673798912)>']
[2024-06-28 07:25:08] 2024-06-28 05:25:03,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-28 07:25:08] 2024-06-28 05:25:03,024 | INFO     | [monitor] control thread has ended
[2024-06-28 07:25:08] 2024-06-28 05:25:07,881 | INFO     | all workflow threads have been joined
[2024-06-28 07:25:08] 2024-06-28 05:25:07,881 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-28 07:25:08] 2024-06-28 05:25:07,882 | INFO     | traces error code: 0
[2024-06-28 07:25:08] 2024-06-28 05:25:07,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-28 07:25:08] 2024-06-28 05:25:07,971 [wrapper] ==== pilot stdout END ====
[2024-06-28 07:25:08] 2024-06-28 05:25:07,974 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-28 07:25:08] 2024-06-28 05:25:07,977 [wrapper] pilotpid: 1116032
[2024-06-28 07:25:08] 2024-06-28 05:25:07,979 [wrapper] Pilot exit status: 0
[2024-06-28 07:25:08] 2024-06-28 05:25:07,988 [wrapper] pandaids: 6246093678
[2024-06-28 07:25:08] 2024-06-28 05:25:08,021 [wrapper] cleanup supervisor_pilot 1495435 1116033
[2024-06-28 07:25:08] 2024-06-28 05:25:08,024 [wrapper] Test setup, not cleaning
[2024-06-28 07:25:08] 2024-06-28 05:25:08,026 [wrapper] ==== wrapper stdout END ====
[2024-06-28 07:25:08] 2024-06-28 05:25:08,029 [wrapper] ==== wrapper stderr END ====
[2024-06-28 07:25:08] 2024-06-28 05:25:08,034 [wrapper] apfmon messages muted
[2024-06-28 07:25:08]  *** Error codes and diagnostics ***
[2024-06-28 07:25:08]     "exeErrorCode": 0,
[2024-06-28 07:25:08]     "exeErrorDiag": "",
[2024-06-28 07:25:08]     "pilotErrorCode": 0,
[2024-06-28 07:25:08]     "pilotErrorDiag": "",
[2024-06-28 07:25:08]  *** Listing of results directory ***
[2024-06-28 07:25:08] total 559692
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc    469766 Jun 27 14:42 pilot3.tar.gz
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc      5654 Jun 27 14:53 queuedata.json
[2024-06-28 07:25:08] -rwx------ 1 boinc boinc     32220 Jun 27 14:54 runpilot2-wrapper.sh
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc       100 Jun 28 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-28 07:25:08] -rwxr-xr-x 1 boinc boinc      7986 Jun 28 02:53 run_atlas
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc       105 Jun 28 02:53 job.xml
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc 388953693 Jun 28 02:53 EVNT.34668890._000002.pool.root.1
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc     17537 Jun 28 02:53 start_atlas.sh
[2024-06-28 07:25:08] drwxrwx--x 2 boinc boinc      4096 Jun 28 02:53 shared
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc    482503 Jun 28 02:53 input.tar.gz
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc      6456 Jun 28 02:53 init_data.xml
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc         0 Jun 28 02:53 boinc_lockfile
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc      2600 Jun 28 02:53 pandaJob.out
[2024-06-28 07:25:08] -rw------- 1 boinc boinc       424 Jun 28 02:53 setup.sh.local
[2024-06-28 07:25:08] -rw------- 1 boinc boinc   1036914 Jun 28 02:53 agis_schedconf.cvmfs.json
[2024-06-28 07:25:08] -rw------- 1 boinc boinc   1321378 Jun 28 02:53 cric_ddmendpoints.json
[2024-06-28 07:25:08] drwx------ 4 boinc boinc      4096 Jun 28 02:53 pilot3
[2024-06-28 07:25:08] -rw------- 1 boinc boinc 176417086 Jun 28 07:24 HITS.40102872._000049.pool.root.1
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc       531 Jun 28 07:24 boinc_task_state.xml
[2024-06-28 07:25:08] -rw------- 1 boinc boinc        95 Jun 28 07:24 pilot_heartbeat.json
[2024-06-28 07:25:08] -rw------- 1 boinc boinc      1041 Jun 28 07:24 memory_monitor_summary.json
[2024-06-28 07:25:08] -rw------- 1 boinc boinc         0 Jun 28 07:24 agis_ddmendpoints.agis.ALL.json
[2024-06-28 07:25:08] -rw------- 1 boinc boinc    374124 Jun 28 07:24 log.40102872._000049.job.log.tgz.1
[2024-06-28 07:25:08] -rw------- 1 boinc boinc      7748 Jun 28 07:24 heartbeat.json
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc      8192 Jun 28 07:24 boinc_mmap_file
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc        28 Jun 28 07:24 wrapper_checkpoint.txt
[2024-06-28 07:25:08] -rw------- 1 boinc boinc      4417 Jun 28 07:25 pilotlog.txt
[2024-06-28 07:25:08] -rw------- 1 boinc boinc   1725477 Jun 28 07:25 log.40102872._000049.job.log.1
[2024-06-28 07:25:08] -rw------- 1 boinc boinc       357 Jun 28 07:25 output.list
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc       620 Jun 28 07:25 runtime_log
[2024-06-28 07:25:08] -rw------- 1 boinc boinc   2119680 Jun 28 07:25 result.tar.gz
[2024-06-28 07:25:08] -rw------- 1 boinc boinc       658 Jun 28 07:25 sdCNDmUp3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmx4oKDmWzHKhn.diag
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc     11410 Jun 28 07:25 runtime_log.err
[2024-06-28 07:25:08] -rw-r--r-- 1 boinc boinc     21414 Jun 28 07:25 stderr.txt
[2024-06-28 07:25:08] HITS file was successfully produced:
[2024-06-28 07:25:08] -rw------- 1 boinc boinc 176417086 Jun 28 07:24 shared/HITS.pool.root.1
[2024-06-28 07:25:08]  *** Contents of shared directory: ***
[2024-06-28 07:25:08] total 554696
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc 388953693 Jun 28 02:53 ATLAS.root_0
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc     17537 Jun 28 02:53 start_atlas.sh
[2024-06-28 07:25:08] -rw-r--r-- 2 boinc boinc    482503 Jun 28 02:53 input.tar.gz
[2024-06-28 07:25:08] -rw------- 1 boinc boinc 176417086 Jun 28 07:24 HITS.pool.root.1
[2024-06-28 07:25:08] -rw------- 1 boinc boinc   2119680 Jun 28 07:25 result.tar.gz
07:25:09 (1112372): run_atlas exited; CPU time 61641.670487
07:25:09 (1112372): called boinc_finish(0)

</stderr_txt>
]]>

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