Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:05:46 (241929): wrapper (7.7.26015): starting
07:05:46 (241929): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 07:05:46] Arguments: --nthreads 12
[2024-06-27 07:05:46] Threads: 12
[2024-06-27 07:05:46] Checking for CVMFS
[2024-06-27 07:05:47] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 07:05:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 07:05:47] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 07:05:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 07:05:47] 2.10.1.0 2805 231358 167588 134351 0 338 42501858 45568000 7687 130560 0 1384972598 99.757 888933314 18070 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-06-27 07:05:47] CVMFS is ok
[2024-06-27 07:05:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 07:05:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 07:05:47] Further information can be found at the LHC@home message board.
[2024-06-27 07:05:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 07:05:47] Checking for apptainer binary...
[2024-06-27 07:05:47] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 07:05:47] Running /usr/bin/apptainer --version
[2024-06-27 07:05:47] apptainer version 1.3.2-1.el7
[2024-06-27 07:05:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 07:05:48] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0087.triumf.lcg
[2024-06-27 07:05:48] apptainer works
[2024-06-27 07:05:48] Set ATHENA_PROC_NUMBER=12
[2024-06-27 07:05:48] Set ATHENA_CORE_NUMBER=12
[2024-06-27 07:05:48] Starting ATLAS job with PandaID=6246090701
[2024-06-27 07:05:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 08:43:57]  *** The last 200 lines of the pilot log: ***
[2024-06-27 08:43:57]  direct_access_wan=False
[2024-06-27 08:43:57]  domain=
[2024-06-27 08:43:57]  filesize=377944
[2024-06-27 08:43:57]  filetype=log
[2024-06-27 08:43:57]  guid=f035cd3b-5254-426d-a844-285adb91dc53
[2024-06-27 08:43:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-27 08:43:57]  is_tar=False
[2024-06-27 08:43:57]  lfn=log.40102779._000040.job.log.tgz.1
[2024-06-27 08:43:57]  mtime=0
[2024-06-27 08:43:57]  protocol_id=None
[2024-06-27 08:43:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 08:43:57]  replicas=None
[2024-06-27 08:43:57]  scope=mc23_13p6TeV
[2024-06-27 08:43:57]  status=None
[2024-06-27 08:43:57]  status_code=0
[2024-06-27 08:43:57]  storage_token=
[2024-06-27 08:43:57]  surl=/home/boinc/slots/0/PanDA_Pilot-6246090701/log.40102779._000040.job.log.tgz.1
[2024-06-27 08:43:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/a7/log.40102779._000040.job.log.tgz.1
[2024-06-27 08:43:57]  workdir=None
[2024-06-27 08:43:57] ]
[2024-06-27 08:43:57] 2024-06-27 15:43:31,682 | WARNING  | process 252681 is no longer using CPU - aborting
[2024-06-27 08:43:57] 2024-06-27 15:43:31,715 | INFO     | transferring file log.40102779._000040.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246090701/log.40102779._000040.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 08:43:57] 2024-06-27 15:43:31,715 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246090701/log.40102779._000040.job.log.tgz.1 /home/boinc/slots/0/log.40102779._000040.job.log.t
[2024-06-27 08:43:57] 2024-06-27 15:43:31,742 | INFO     | adding to output.list: log.40102779._000040.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/a7/log.40102779._000040.job.log.tg
[2024-06-27 08:43:57] 2024-06-27 15:43:31,742 | INFO     | summary of transferred files:
[2024-06-27 08:43:57] 2024-06-27 15:43:31,742 | INFO     |  -- lfn=log.40102779._000040.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 08:43:57] 2024-06-27 15:43:31,743 | INFO     | stage-out finished correctly
[2024-06-27 08:43:57] 2024-06-27 15:43:31,796 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 08:43:57] 2024-06-27 15:43:32,728 | INFO     | job 6246090701 has state=finished
[2024-06-27 08:43:57] 2024-06-27 15:43:32,729 | INFO     | preparing for final server update for job 6246090701 in state='finished'
[2024-06-27 08:43:57] 2024-06-27 15:43:32,729 | INFO     | this job has now completed (state=finished)
[2024-06-27 08:43:57] 2024-06-27 15:43:32,730 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 08:43:57] 2024-06-27 15:43:32,730 | INFO     | job 6246090701 has finished - writing final server update
[2024-06-27 08:43:57] 2024-06-27 15:43:32,730 | INFO     | total number of processed events: 400 (read)
[2024-06-27 08:43:57] 2024-06-27 15:43:32,733 | INFO     | executing command: lscpu
[2024-06-27 08:43:57] 2024-06-27 15:43:32,775 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 08:43:57] 2024-06-27 15:43:32,775 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 08:43:57] 2024-06-27 15:43:32,826 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 08:43:57] 2024-06-27 15:43:34,185 | INFO     | monitor loop #440: job 0:6246090701 is in state 'finished'
[2024-06-27 08:43:57] 2024-06-27 15:43:34,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,819 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 08:43:57] 2024-06-27 15:43:35,820 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246090701/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,820 | INFO     | extracted standard info from prmon json
[2024-06-27 08:43:57] 2024-06-27 15:43:35,820 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 08:43:57] 2024-06-27 15:43:35,820 | WARNING  | GPU info not found in prmon json
[2024-06-27 08:43:57] 2024-06-27 15:43:35,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 08:43:57] 2024-06-27 15:43:35,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 08:43:57] 2024-06-27 15:43:35,822 | INFO     | fitting pss+swap vs Time
[2024-06-27 08:43:57] 2024-06-27 15:43:35,822 | INFO     | model: linear, x: [1719497496.0, 1719497557.0, 1719497618.0, 1719497679.0, 1719497740.0, 1719497801.0, 1719497862.0, 1719497923.0, 1719497984.0, 1719498045.0, 1719
[2024-06-27 08:43:57] 2024-06-27 15:43:35,822 | INFO     | sum of square deviations: 218558504.38202274
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | sum of deviations: 38396267553.64045
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | mean x: 1719500180.1348314
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | mean y: 2474696.6966292136
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | -- intersect: -302078604974.2554
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | intersect: -302078604974.2554
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | chi2: 3.441167858554002
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | -- intersect: -302078604974.2554
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | current memory leak: 175.68 B/s (using 89 data points, chi2=3.44)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | ..............................
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | . Timing measurements:
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | . get job = 0 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | . initial setup = 2 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | . payload setup = 10 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,823 | INFO     | . stage-in = 0 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,824 | INFO     | . payload execution = 5823 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,824 | INFO     | . stage-out = 0 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,824 | INFO     | . log creation = 0 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,824 | INFO     | ..............................
[2024-06-27 08:43:57] 2024-06-27 15:43:35,877 | INFO     | 
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | job summary report
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | --------------------------------------------------
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | PanDA job id: 6246090701
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | task id: 40102779
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | errors: (none)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | pilot state: finished 
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | transexitcode: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | exeerrorcode: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | exeerrordiag: 
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | exitcode: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | exitmsg: OK
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | cpuconsumptiontime: 23967 s
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | nevents: 400
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | neventsw: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | pid: 252681
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | pgrp: 252681
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | corecount: 12
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | event service: False
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | sizes: {0: 2386095, 1: 2387030, 6: 2387236, 11: 2387264, 5837: 2413872, 5838: 2423010, 5842: 2423124}
[2024-06-27 08:43:57] 2024-06-27 15:43:35,878 | INFO     | --------------------------------------------------
[2024-06-27 08:43:57] 2024-06-27 15:43:35,879 | INFO     | 
[2024-06-27 08:43:57] 2024-06-27 15:43:35,879 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,904 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | job 6246090701 has completed (purged errors)
[2024-06-27 08:43:57] 2024-06-27 15:43:35,905 | INFO     | overall cleanup function is called
[2024-06-27 08:43:57] 2024-06-27 15:43:36,912 | INFO     | --- collectZombieJob: --- 10, [252681]
[2024-06-27 08:43:57] 2024-06-27 15:43:36,912 | INFO     | zombie collector waiting for pid 252681
[2024-06-27 08:43:57] 2024-06-27 15:43:36,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 08:43:57] 2024-06-27 15:43:37,917 | INFO     | collected zombie processes
[2024-06-27 08:43:57] 2024-06-27 15:43:37,917 | INFO     | will now attempt to kill all subprocesses of pid=252681
[2024-06-27 08:43:57] 2024-06-27 15:43:38,003 | INFO     | process IDs to be killed: [252681] (in reverse order)
[2024-06-27 08:43:57] 2024-06-27 15:43:38,079 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 08:43:57] 2024-06-27 15:43:38,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 08:43:57] 2024-06-27 15:43:38,083 | INFO     | did not find any defunct processes belonging to 252681
[2024-06-27 08:43:57] 2024-06-27 15:43:38,086 | INFO     | did not find any defunct processes belonging to 252681
[2024-06-27 08:43:57] 2024-06-27 15:43:38,087 | INFO     | ready for new job
[2024-06-27 08:43:57] 2024-06-27 15:43:38,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 08:43:57] 2024-06-27 15:43:38,088 | INFO     | *************************************
[2024-06-27 08:43:57] 2024-06-27 15:43:38,088 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 08:43:57] 2024-06-27 15:43:38,088 | INFO     | *************************************
[2024-06-27 08:43:57] 2024-06-27 15:43:38,088 | INFO     | 
[2024-06-27 08:43:57] 2024-06-27 15:43:38,090 | INFO     | architecture information:
[2024-06-27 08:43:57] 2024-06-27 15:43:38,090 | INFO     | executing command: cat /etc/os-release
[2024-06-27 08:43:57] 2024-06-27 15:43:38,105 | INFO     | cat /etc/os-release:
[2024-06-27 08:43:57] NAME="CentOS Linux"
[2024-06-27 08:43:57] VERSION="7 (Core)"
[2024-06-27 08:43:57] ID="centos"
[2024-06-27 08:43:57] ID_LIKE="rhel fedora"
[2024-06-27 08:43:57] VERSION_ID="7"
[2024-06-27 08:43:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 08:43:57] ANSI_COLOR="0;31"
[2024-06-27 08:43:57] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 08:43:57] HOME_URL="https://www.centos.org/"
[2024-06-27 08:43:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 08:43:57] 
[2024-06-27 08:43:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 08:43:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 08:43:57] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 08:43:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 08:43:57] 
[2024-06-27 08:43:57] 2024-06-27 15:43:38,105 | INFO     | *************************************
[2024-06-27 08:43:57] 2024-06-27 15:43:38,607 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 08:43:57] 2024-06-27 15:43:38,627 | INFO     | sufficient remaining disk space (2037134655488 B)
[2024-06-27 08:43:57] 2024-06-27 15:43:38,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 08:43:57] 2024-06-27 15:43:38,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 08:43:57] 2024-06-27 15:43:38,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 08:43:57] 2024-06-27 15:43:38,629 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-27 08:43:57] 2024-06-27 15:43:38,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 08:43:57] 2024-06-27 15:43:38,629 | INFO     | aborting loop
[2024-06-27 08:43:57] 2024-06-27 15:43:38,629 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 08:43:57] 2024-06-27 15:43:38,630 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 08:43:57] 2024-06-27 15:43:38,630 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 08:43:57] 2024-06-27 15:43:38,764 | INFO     | all data control threads have been joined
[2024-06-27 08:43:57] 2024-06-27 15:43:39,548 | INFO     | all payload control threads have been joined
[2024-06-27 08:43:57] 2024-06-27 15:43:39,634 | INFO     | [job] job monitor thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,634 | INFO     | [job] retrieve thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,770 | INFO     | [data] control thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,786 | INFO     | [payload] validate_post thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 08:43:57] 2024-06-27 15:43:39,820 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,821 | INFO     | [data] copytool_in thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:39,890 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:40,055 | INFO     | all job control threads have been joined
[2024-06-27 08:43:57] 2024-06-27 15:43:40,184 | INFO     | [payload] failed_post thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:40,309 | INFO     | [job] validate thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:40,552 | INFO     | [payload] control thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:40,704 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:40,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 08:43:57] 2024-06-27 15:43:41,060 | INFO     | [job] control thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:41,811 | INFO     | [data] copytool_out thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:41,888 | INFO     | [job] queue monitor thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:42,636 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:49,214 | INFO     | job.realtimelogging is not enabled
[2024-06-27 08:43:57] 2024-06-27 15:43:50,216 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 08:43:57] 2024-06-27 15:43:51,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609984751424)>', '<ExcThread(monitor, started 140609553680128)>']
[2024-06-27 08:43:57] 2024-06-27 15:43:51,681 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 08:43:57] 2024-06-27 15:43:51,681 | INFO     | [monitor] control thread has ended
[2024-06-27 08:43:57] 2024-06-27 15:43:56,431 | INFO     | all workflow threads have been joined
[2024-06-27 08:43:57] 2024-06-27 15:43:56,431 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 08:43:57] 2024-06-27 15:43:56,432 | INFO     | traces error code: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:56,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 08:43:57] 2024-06-27 15:43:56,555 [wrapper] ==== pilot stdout END ====
[2024-06-27 08:43:57] 2024-06-27 15:43:56,560 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 08:43:57] 2024-06-27 15:43:56,564 [wrapper] pilotpid: 245561
[2024-06-27 08:43:57] 2024-06-27 15:43:56,567 [wrapper] Pilot exit status: 0
[2024-06-27 08:43:57] 2024-06-27 15:43:56,578 [wrapper] pandaids: 6246090701
[2024-06-27 08:43:57] 2024-06-27 15:43:56,647 [wrapper] cleanup supervisor_pilot  84558 245562
[2024-06-27 08:43:57] 2024-06-27 15:43:56,651 [wrapper] Test setup, not cleaning
[2024-06-27 08:43:57] 2024-06-27 15:43:56,654 [wrapper] ==== wrapper stdout END ====
[2024-06-27 08:43:57] 2024-06-27 15:43:56,657 [wrapper] ==== wrapper stderr END ====
[2024-06-27 08:43:57] 2024-06-27 15:43:56,663 [wrapper] apfmon messages muted
[2024-06-27 08:43:57]  *** Error codes and diagnostics ***
[2024-06-27 08:43:57]     "exeErrorCode": 0,
[2024-06-27 08:43:57]     "exeErrorDiag": "",
[2024-06-27 08:43:57]     "pilotErrorCode": 0,
[2024-06-27 08:43:57]     "pilotErrorDiag": "",
[2024-06-27 08:43:57]  *** Listing of results directory ***
[2024-06-27 08:43:57] total 542508
[2024-06-27 08:43:57] -rwx------ 1 boinc boinc     32220 Jun 27 05:41 runpilot2-wrapper.sh
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc    469766 Jun 27 05:42 pilot3.tar.gz
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc      5654 Jun 27 05:49 queuedata.json
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc       100 Jun 27 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 08:43:57] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 07:05 run_atlas
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc       105 Jun 27 07:05 job.xml
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc 389092861 Jun 27 07:05 EVNT.34668264._000002.pool.root.1
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc      6627 Jun 27 07:05 init_data.xml
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc     17537 Jun 27 07:05 start_atlas.sh
[2024-06-27 08:43:57] drwxrwx--x 2 boinc boinc      4096 Jun 27 07:05 shared
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc    482495 Jun 27 07:05 input.tar.gz
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc         0 Jun 27 07:05 boinc_lockfile
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc      2593 Jun 27 07:05 pandaJob.out
[2024-06-27 08:43:57] -rw------- 1 boinc boinc       424 Jun 27 07:05 setup.sh.local
[2024-06-27 08:43:57] -rw------- 1 boinc boinc   1034827 Jun 27 07:05 agis_schedconf.cvmfs.json
[2024-06-27 08:43:57] -rw------- 1 boinc boinc         0 Jun 27 07:05 agis_ddmendpoints.agis.ALL.json
[2024-06-27 08:43:57] -rw------- 1 boinc boinc   1321363 Jun 27 07:05 cric_ddmendpoints.json
[2024-06-27 08:43:57] drwx------ 4 boinc boinc      4096 Jun 27 07:05 pilot3
[2024-06-27 08:43:57] -rw------- 1 boinc boinc 161089071 Jun 27 08:43 HITS.40102779._000040.pool.root.1
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc       529 Jun 27 08:43 boinc_task_state.xml
[2024-06-27 08:43:57] -rw------- 1 boinc boinc      1058 Jun 27 08:43 memory_monitor_summary.json
[2024-06-27 08:43:57] -rw------- 1 boinc boinc    377944 Jun 27 08:43 log.40102779._000040.job.log.tgz.1
[2024-06-27 08:43:57] -rw------- 1 boinc boinc      7760 Jun 27 08:43 heartbeat.json
[2024-06-27 08:43:57] -rw------- 1 boinc boinc        95 Jun 27 08:43 pilot_heartbeat.json
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc      8192 Jun 27 08:43 boinc_mmap_file
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc        27 Jun 27 08:43 wrapper_checkpoint.txt
[2024-06-27 08:43:57] -rw------- 1 boinc boinc      4405 Jun 27 08:43 pilotlog.txt
[2024-06-27 08:43:57] -rw------- 1 boinc boinc    519601 Jun 27 08:43 log.40102779._000040.job.log.1
[2024-06-27 08:43:57] -rw------- 1 boinc boinc       357 Jun 27 08:43 output.list
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc       620 Jun 27 08:43 runtime_log
[2024-06-27 08:43:57] -rw------- 1 boinc boinc    921600 Jun 27 08:43 result.tar.gz
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc     11286 Jun 27 08:43 runtime_log.err
[2024-06-27 08:43:57] -rw------- 1 boinc boinc       653 Jun 27 08:43 Me8LDm7b3g5n7Olcko1bjSoqABFKDmABFKDmOtvXDmm1rKDmaxYhCo.diag
[2024-06-27 08:43:57] -rw-r--r-- 1 boinc boinc     21427 Jun 27 08:43 stderr.txt
[2024-06-27 08:43:57] HITS file was successfully produced:
[2024-06-27 08:43:57] -rw------- 1 boinc boinc 161089071 Jun 27 08:43 shared/HITS.pool.root.1
[2024-06-27 08:43:57]  *** Contents of shared directory: ***
[2024-06-27 08:43:57] total 538692
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc 389092861 Jun 27 07:05 ATLAS.root_0
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc     17537 Jun 27 07:05 start_atlas.sh
[2024-06-27 08:43:57] -rw-r--r-- 2 boinc boinc    482495 Jun 27 07:05 input.tar.gz
[2024-06-27 08:43:57] -rw------- 1 boinc boinc 161089071 Jun 27 08:43 HITS.pool.root.1
[2024-06-27 08:43:57] -rw------- 1 boinc boinc    921600 Jun 27 08:43 result.tar.gz
08:43:59 (241929): run_atlas exited; CPU time 23836.777581
08:43:59 (241929): called boinc_finish(0)

</stderr_txt>
]]>

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