Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:52:14 (1677248): Detected: vboxwrapper 26206
2024-06-27 15:52:14 (1677248): Detected: BOINC client v8.0.3
2024-06-27 15:52:14 (1677248): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-27 15:52:14 (1677248): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:52:14 (1677248): Create VM. (boinc_05360c65997d3637, slot#5)
2024-06-27 15:52:14 (1677248): Setting Memory Size for VM. (4096MB)
2024-06-27 15:52:14 (1677248): Setting CPU Count for VM. (1)
2024-06-27 15:52:14 (1677248): Setting Chipset Options for VM.
2024-06-27 15:52:14 (1677248): Setting Graphics Controller Options for VM.
2024-06-27 15:52:14 (1677248): Setting Boot Options for VM.
2024-06-27 15:52:15 (1677248): Setting Network Configuration for NAT.
2024-06-27 15:52:15 (1677248): Enabling VM Network Access.
2024-06-27 15:52:15 (1677248): Disabling USB Support for VM.
2024-06-27 15:52:15 (1677248): Disabling COM Port Support for VM.
2024-06-27 15:52:15 (1677248): Disabling LPT Port Support for VM.
2024-06-27 15:52:15 (1677248): Disabling Audio Support for VM.
2024-06-27 15:52:15 (1677248): Disabling Clipboard Support for VM.
2024-06-27 15:52:15 (1677248): Disabling Drag and Drop Support for VM.
2024-06-27 15:52:15 (1677248): Adding storage controller(s) to VM.
2024-06-27 15:52:15 (1677248): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:52:16 (1677248): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:52:16 (1677248): forwarding host port 33951 to guest port 80
2024-06-27 15:52:16 (1677248): Enabling remote desktop for VM.
2024-06-27 15:52:16 (1677248): Enabling shared directory for VM.
2024-06-27 15:52:16 (1677248): Starting VM using VBoxManage interface. (boinc_05360c65997d3637, slot#5)
2024-06-27 15:52:17 (1677248): Successfully started VM. (PID = '1677636')
2024-06-27 15:52:17 (1677248): Reporting VM Process ID to BOINC.
2024-06-27 15:52:17 (1677248): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-27 15:52:17 (1677248): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:52:17 (1677248): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:52:17 (1677248): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:52:17 (1677248): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:52:17 (1677248): Detected: Web Application Enabled (http://localhost:33951)
2024-06-27 15:52:17 (1677248): Detected: Remote Desktop Enabled (localhost:52971)
2024-06-27 15:52:17 (1677248): Preference change detected
2024-06-27 15:52:17 (1677248): Setting CPU throttle for VM. (100%)
2024-06-27 15:52:17 (1677248): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:52:19 (1677248): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:52:19 (1677248): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:52:22 (1677248): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:52:22 (1677248): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:52:22 (1677248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:52:28 (1677248): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:52:28 (1677248): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:52:41 (1677248): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000236 main     Log opened 2024-06-27T13:52:39.197744000Z
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000452 main     OS Product: Linux
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000529 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000598 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000664 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000665 main     Process ID: 1236
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.000666 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:52:41 (1677248): Guest Log: 00:00:00.002879 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:52:41 (1677248): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:52:41 (1677248): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:52:41 (1677248): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:54:24 (1677248): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:54:24 (1677248): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:54:24 (1677248): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:54:24 (1677248): Guest Log: Copying input files
2024-06-27 15:54:26 (1677248): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:54:27 (1677248): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-27 15:54:47 (1677248): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:54:47 (1677248): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:54:47 (1677248): Guest Log: 2.6.3.0 1543 1 31544 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2024-06-27 15:54:48 (1677248): Guest Log: copied the webapp to /var/www
2024-06-27 15:54:48 (1677248): Guest Log: core_number=1
2024-06-27 15:54:48 (1677248): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:54:48 (1677248): Guest Log:  *** Starting ATLAS job. (PandaID=6246093491 taskID=40102868) ***
2024-06-27 17:31:18 (1677248): Status Report: Elapsed Time: '6000.000000'
2024-06-27 17:31:18 (1677248): Status Report: CPU Time: '5013.560000'
2024-06-27 19:10:18 (1677248): Status Report: Elapsed Time: '12000.000000'
2024-06-27 19:10:18 (1677248): Status Report: CPU Time: '10960.820000'
2024-06-27 20:49:19 (1677248): Status Report: Elapsed Time: '18000.000000'
2024-06-27 20:49:19 (1677248): Status Report: CPU Time: '16902.750000'
2024-06-27 22:28:20 (1677248): Status Report: Elapsed Time: '24000.000000'
2024-06-27 22:28:20 (1677248): Status Report: CPU Time: '22850.350000'
2024-06-28 00:07:20 (1677248): Status Report: Elapsed Time: '30000.000000'
2024-06-28 00:07:20 (1677248): Status Report: CPU Time: '28790.240000'
2024-06-28 01:46:21 (1677248): Status Report: Elapsed Time: '36000.000000'
2024-06-28 01:46:21 (1677248): Status Report: CPU Time: '34724.610000'
2024-06-28 03:25:21 (1677248): Status Report: Elapsed Time: '42000.000000'
2024-06-28 03:25:21 (1677248): Status Report: CPU Time: '40671.880000'
2024-06-28 05:04:22 (1677248): Status Report: Elapsed Time: '48000.000000'
2024-06-28 05:04:22 (1677248): Status Report: CPU Time: '46618.830000'
2024-06-28 06:43:23 (1677248): Status Report: Elapsed Time: '54000.000000'
2024-06-28 06:43:23 (1677248): Status Report: CPU Time: '52566.790000'
2024-06-28 08:22:23 (1677248): Status Report: Elapsed Time: '60000.000000'
2024-06-28 08:22:23 (1677248): Status Report: CPU Time: '58514.010000'
2024-06-28 09:18:59 (1677248): Guest Log:  *** Job finished ***
2024-06-28 09:18:59 (1677248): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:46,651 | INFO     | [data] queue_monitor thread has finished
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:50,893 | INFO     | job.realtimelogging is not enabled
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:51,895 | INFO     | [payload] run_realtimelog thread has finished
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:52,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467694495552)>', '<ExcThread(monitor, started 140467039631104)>']
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:52,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:52,680 | INFO     | [monitor] control thread has ended
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,103 | INFO     | all workflow threads have been joined
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,104 | INFO     | end of generic workflow (traces error code: 0)
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,104 | INFO     | traces error code: 0
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,185 [wrapper] ==== pilot stdout END ====
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,190 [wrapper] ==== wrapper stdout RESUME ====
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,194 [wrapper] pilotpid: 5860
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:57,198 [wrapper] Pilot exit status: 0
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,381 [wrapper] pandaids: 6246093491
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,408 [wrapper] cleanup supervisor_pilot  4238 5861
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,413 [wrapper] Test setup, not cleaning
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,417 [wrapper] ==== wrapper stdout END ====
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,423 [wrapper] ==== wrapper stderr END ====
2024-06-28 09:18:59 (1677248): Guest Log: 2024-06-28 07:18:59,431 [wrapper] apfmon messages muted
2024-06-28 09:18:59 (1677248): Guest Log:  *** Error codes and diagnostics ***
2024-06-28 09:19:00 (1677248): Guest Log:     "exeErrorCode": 0,
2024-06-28 09:19:00 (1677248): Guest Log:     "exeErrorDiag": "",
2024-06-28 09:19:00 (1677248): Guest Log:     "pilotErrorCode": 0,
2024-06-28 09:19:00 (1677248): Guest Log:     "pilotErrorDiag": "",
2024-06-28 09:19:00 (1677248): Guest Log:  *** Listing of results directory ***
2024-06-28 09:19:00 (1677248): Guest Log: total 196004
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-28 09:19:00 (1677248): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:46 runpilot2-wrapper.sh
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:49 queuedata.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas      9682 Jun 27 13:54 init_data.xml
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas    482509 Jun 27 13:54 input.tar.gz
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 27 13:54 start_atlas.sh
2024-06-28 09:19:00 (1677248): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:54 EVNT.34668864._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas      2592 Jun 27 13:54 pandaJob.out
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas       456 Jun 27 13:54 setup.sh.local
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:56 agis_schedconf.cvmfs.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:56 cric_ddmendpoints.json
2024-06-28 09:19:00 (1677248): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:56 pilot3
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas 178121199 Jun 28 07:17 HITS.40102868._000018.pool.root.1
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas      1020 Jun 28 07:17 memory_monitor_summary.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas         0 Jun 28 07:17 agis_ddmendpoints.agis.ALL.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas    861653 Jun 28 07:17 log.40102868._000018.job.log.tgz.1
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas        95 Jun 28 07:18 pilot_heartbeat.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas      7704 Jun 28 07:18 heartbeat.json
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 28 07:18 pilotlog.txt
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas   8690454 Jun 28 07:18 log.40102868._000018.job.log.1
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas       357 Jun 28 07:18 output.list
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 28 07:18 runtime_log
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas   9574400 Jun 28 07:18 result.tar.gz
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 atlas atlas     11143 Jun 28 07:18 runtime_log.err
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas       646 Jun 28 07:18 NwEODmLh3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmi1oKDmoiJosm.diag
2024-06-28 09:19:00 (1677248): Guest Log: Looking for outputfile HITS.40102868._000018.pool.root.1
2024-06-28 09:19:00 (1677248): Guest Log: HITS file was successfully produced
2024-06-28 09:19:00 (1677248): Guest Log: -rw-------. 1 atlas atlas 178121199 Jun 28 07:17 /home/atlas/RunAtlas/HITS.40102868._000018.pool.root.1
2024-06-28 09:19:00 (1677248): Guest Log: Successfully finished the ATLAS job!
2024-06-28 09:19:00 (1677248): Guest Log: Copying the results back to the shared directory!
2024-06-28 09:19:00 (1677248): Guest Log:  *** Contents of shared directory: ***
2024-06-28 09:19:00 (1677248): Guest Log: total 391588
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 root root 390886958 Jun 27 13:52 ATLAS.root_0
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 root root      9682 Jun 27 13:52 init_data.xml
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 root root    482509 Jun 27 13:52 input.tar.gz
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 root root   9574400 Jun 28 07:19 result.tar.gz
2024-06-28 09:19:00 (1677248): Guest Log: -rw-r--r--. 1 root root     17537 Jun 27 13:52 start_atlas.sh
2024-06-28 09:19:00 (1677248): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-28 09:19:00 (1677248): VM Completion File Detected.
2024-06-28 09:19:00 (1677248): Powering off VM.
2024-06-28 09:19:01 (1677248): Successfully stopped VM.
2024-06-28 09:19:01 (1677248): Deregistering VM. (boinc_05360c65997d3637, slot#5)
2024-06-28 09:19:01 (1677248): Removing network bandwidth throttle group from VM.
2024-06-28 09:19:01 (1677248): Removing VM from VirtualBox.
09:19:06 (1677248): called boinc_finish(0)

</stderr_txt>
]]>

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