Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:45:55 (2420): Detected: vboxwrapper 26206
2024-06-27 15:45:55 (2420): Detected: BOINC client v8.0.2
2024-06-27 15:45:55 (2420): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-27 15:45:56 (2420): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:45:56 (2420): Create VM. (boinc_b731c726e771ff8b, slot#5)
2024-06-27 15:45:57 (2420): Setting Memory Size for VM. (4096MB)
2024-06-27 15:45:57 (2420): Setting CPU Count for VM. (1)
2024-06-27 15:45:57 (2420): Setting Chipset Options for VM.
2024-06-27 15:45:58 (2420): Setting Graphics Controller Options for VM.
2024-06-27 15:45:58 (2420): Setting Boot Options for VM.
2024-06-27 15:45:58 (2420): Setting Network Configuration for NAT.
2024-06-27 15:45:58 (2420): Enabling VM Network Access.
2024-06-27 15:45:59 (2420): Disabling USB Support for VM.
2024-06-27 15:45:59 (2420): Disabling COM Port Support for VM.
2024-06-27 15:45:59 (2420): Disabling LPT Port Support for VM.
2024-06-27 15:45:59 (2420): Disabling Audio Support for VM.
2024-06-27 15:46:00 (2420): Disabling Clipboard Support for VM.
2024-06-27 15:46:00 (2420): Disabling Drag and Drop Support for VM.
2024-06-27 15:46:00 (2420): Adding storage controller(s) to VM.
2024-06-27 15:46:00 (2420): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:46:01 (2420): Adding VirtualBox Guest Additions to VM.
2024-06-27 15:46:01 (2420): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:46:01 (2420): forwarding host port 59578 to guest port 80
2024-06-27 15:46:02 (2420): Enabling remote desktop for VM.
2024-06-27 15:46:02 (2420): Enabling shared directory for VM.
2024-06-27 15:46:03 (2420): Starting VM using VBoxManage interface. (boinc_b731c726e771ff8b, slot#5)
2024-06-27 15:46:07 (2420): Successfully started VM. (PID = '34844')
2024-06-27 15:46:07 (2420): Reporting VM Process ID to BOINC.
2024-06-27 15:46:07 (2420): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-27 15:46:07 (2420): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:46:07 (2420): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:46:07 (2420): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:46:07 (2420): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:46:07 (2420): Detected: Web Application Enabled (http://localhost:59578)
2024-06-27 15:46:07 (2420): Detected: Remote Desktop Enabled (localhost:59579)
2024-06-27 15:46:07 (2420): Preference change detected
2024-06-27 15:46:07 (2420): Setting CPU throttle for VM. (100%)
2024-06-27 15:46:08 (2420): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:46:09 (2420): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:46:09 (2420): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:46:11 (2420): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:46:11 (2420): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:46:11 (2420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:46:14 (2420): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:46:14 (2420): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:46:19 (2420): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000074 main     Log opened 2024-06-27T15:46:17.157158000Z
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000152 main     OS Product: Linux
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000167 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000180 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000192 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000193 main     Process ID: 1234
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000193 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:46:19 (2420): Guest Log: 00:00:00.000804 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:46:19 (2420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:46:19 (2420): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:46:19 (2420): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:46:29 (2420): Guest Log: 00:00:10.010341 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 117 773 000ns (GuestNow=1 719 495 989 049 306 000 ns GuestLast=1 719 503 177 167 079 000 ns fSetTimeLastLoop=true )
2024-06-27 15:48:02 (2420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:48:02 (2420): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:48:02 (2420): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:48:02 (2420): Guest Log: Copying input files
2024-06-27 15:48:03 (2420): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:48:03 (2420): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-06-27 15:48:11 (2420): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:48:11 (2420): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:48:11 (2420): Guest Log: 2.6.3.0 1541 0 29580 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-06-27 15:48:11 (2420): Guest Log: copied the webapp to /var/www
2024-06-27 15:48:11 (2420): Guest Log: core_number=1
2024-06-27 15:48:11 (2420): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:48:12 (2420): Guest Log:  *** Starting ATLAS job. (PandaID=6246089733 taskID=40102741) ***
2024-06-27 17:26:10 (2420): Status Report: Elapsed Time: '6000.000000'
2024-06-27 17:26:10 (2420): Status Report: CPU Time: '4961.687500'
2024-06-27 19:06:13 (2420): Status Report: Elapsed Time: '12000.000000'
2024-06-27 19:06:13 (2420): Status Report: CPU Time: '10955.859375'
2024-06-27 20:46:15 (2420): Status Report: Elapsed Time: '18000.000000'
2024-06-27 20:46:15 (2420): Status Report: CPU Time: '16949.515625'
2024-06-27 22:26:17 (2420): Status Report: Elapsed Time: '24000.000000'
2024-06-27 22:26:17 (2420): Status Report: CPU Time: '22943.546875'
2024-06-27 22:58:16 (2420): Guest Log:  *** Job finished ***
2024-06-27 22:58:16 (2420): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:57:53,451 | INFO     | [data] queue_monitor thread has finished
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:57:57,490 | INFO     | job.realtimelogging is not enabled
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:57:58,492 | INFO     | [payload] run_realtimelog thread has finished
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:00,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009646180160)>', '<ExcThread(monitor, started 140009197782784)>']
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:01,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:01,019 | INFO     | [monitor] control thread has ended
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,274 | INFO     | all workflow threads have been joined
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,274 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,275 | INFO     | traces error code: 0
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,350 [wrapper] ==== pilot stdout END ====
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,352 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,353 [wrapper] pilotpid: 5835
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,354 [wrapper] Pilot exit status: 0
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,396 [wrapper] pandaids: 6246089733
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,408 [wrapper] cleanup supervisor_pilot  3806 5836
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,410 [wrapper] Test setup, not cleaning
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,412 [wrapper] ==== wrapper stdout END ====
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,413 [wrapper] ==== wrapper stderr END ====
2024-06-27 22:58:16 (2420): Guest Log: 2024-06-27 20:58:05,415 [wrapper] apfmon messages muted
2024-06-27 22:58:16 (2420): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 22:58:16 (2420): Guest Log:     "exeErrorCode": 0,
2024-06-27 22:58:16 (2420): Guest Log:     "exeErrorDiag": "",
2024-06-27 22:58:16 (2420): Guest Log:     "pilotErrorCode": 0,
2024-06-27 22:58:16 (2420): Guest Log:     "pilotErrorDiag": "",
2024-06-27 22:58:16 (2420): Guest Log:  *** Listing of results directory ***
2024-06-27 22:58:16 (2420): Guest Log: total 180708
2024-06-27 22:58:16 (2420): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:40 runpilot2-wrapper.sh
2024-06-27 22:58:16 (2420): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-27 22:58:16 (2420): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:49 queuedata.json
2024-06-27 22:58:16 (2420): Guest Log: -rwxr-xr-x. 1 atlas atlas      9303 Jun 27 13:48 init_data.xml
2024-06-27 22:58:16 (2420): Guest Log: -rwxr-xr-x. 1 atlas atlas    482492 Jun 27 13:48 input.tar.gz
2024-06-27 22:58:16 (2420): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 13:48 start_atlas.sh
2024-06-27 22:58:16 (2420): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:48 EVNT.34667931._000004.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 22:58:16 (2420): Guest Log: -rw-r--r--. 1 atlas atlas      2605 Jun 27 13:48 pandaJob.out
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas       460 Jun 27 13:48 setup.sh.local
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:48 agis_schedconf.cvmfs.json
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:49 cric_ddmendpoints.json
2024-06-27 22:58:16 (2420): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:49 pilot3
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas 174764467 Jun 27 20:57 HITS.40102741._000050.pool.root.1
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 20:57 pilot_heartbeat.json
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas      1023 Jun 27 20:57 memory_monitor_summary.json
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 20:57 agis_ddmendpoints.agis.ALL.json
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas    428150 Jun 27 20:57 log.40102741._000050.job.log.tgz.1
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas      7694 Jun 27 20:57 heartbeat.json
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas      4652 Jun 27 20:58 pilotlog.txt
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas   2973615 Jun 27 20:58 log.40102741._000050.job.log.1
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 20:58 output.list
2024-06-27 22:58:16 (2420): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 20:58 runtime_log
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas   3420160 Jun 27 20:58 result.tar.gz
2024-06-27 22:58:16 (2420): Guest Log: -rw-r--r--. 1 atlas atlas     11170 Jun 27 20:58 runtime_log.err
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas       644 Jun 27 20:58 Q2fMDmyb3g5n7Olcko1bjSoqABFKDmABFKDmOtvXDmA1rKDmyMENhn.diag
2024-06-27 22:58:16 (2420): Guest Log: Looking for outputfile HITS.40102741._000050.pool.root.1
2024-06-27 22:58:16 (2420): Guest Log: HITS file was successfully produced
2024-06-27 22:58:16 (2420): Guest Log: -rw-------. 1 atlas atlas 174764467 Jun 27 20:57 /home/atlas/RunAtlas/HITS.40102741._000050.pool.root.1
2024-06-27 22:58:16 (2420): Guest Log: Successfully finished the ATLAS job!
2024-06-27 22:58:16 (2420): Guest Log: Copying the results back to the shared directory!
2024-06-27 22:58:16 (2420): Guest Log:  *** Contents of shared directory: ***
2024-06-27 22:58:16 (2420): Guest Log: total 558692
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root 393395698 Jun 27 13:45 ATLAS.root_0
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root 174764467 Jun 27  2024 HITS.pool.root.1
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root      9303 Jun 27 13:45 init_data.xml
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root    482492 Jun 27 13:45 input.tar.gz
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root   3420160 Jun 27  2024 result.tar.gz
2024-06-27 22:58:16 (2420): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 13:45 start_atlas.sh
2024-06-27 22:58:17 (2420): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 22:58:17 (2420): VM Completion File Detected.
2024-06-27 22:58:17 (2420): Powering off VM.
2024-06-27 22:58:17 (2420): Successfully stopped VM.
2024-06-27 22:58:17 (2420): Deregistering VM. (boinc_b731c726e771ff8b, slot#5)
2024-06-27 22:58:18 (2420): Removing network bandwidth throttle group from VM.
2024-06-27 22:58:18 (2420): Removing VM from VirtualBox.
22:58:23 (2420): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN