Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:45:10 (5972): Detected: vboxwrapper 26206
2024-06-27 15:45:10 (5972): Detected: BOINC client v7.24.1
2024-06-27 15:45:11 (5972): Detected: VirtualBox VboxManage Interface (Version: 6.1.46)
2024-06-27 15:45:11 (5972): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:45:11 (5972): Create VM. (boinc_5800a6d8ad51cbe8, slot#4)
2024-06-27 15:45:12 (5972): Setting Memory Size for VM. (4400MB)
2024-06-27 15:45:13 (5972): Setting CPU Count for VM. (4)
2024-06-27 15:45:14 (5972): Setting Chipset Options for VM.
2024-06-27 15:45:15 (5972): Setting Graphics Controller Options for VM.
2024-06-27 15:45:15 (5972): Setting Boot Options for VM.
2024-06-27 15:45:15 (5972): Setting Network Configuration for NAT.
2024-06-27 15:45:16 (5972): Enabling VM Network Access.
2024-06-27 15:45:16 (5972): Disabling USB Support for VM.
2024-06-27 15:45:17 (5972): Disabling COM Port Support for VM.
2024-06-27 15:45:19 (5972): Disabling LPT Port Support for VM.
2024-06-27 15:45:19 (5972): Disabling Audio Support for VM.
2024-06-27 15:45:19 (5972): Disabling Clipboard Support for VM.
2024-06-27 15:45:19 (5972): Disabling Drag and Drop Support for VM.
2024-06-27 15:45:20 (5972): Adding storage controller(s) to VM.
2024-06-27 15:45:20 (5972): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:45:20 (5972): Adding VirtualBox Guest Additions to VM.
2024-06-27 15:45:21 (5972): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:45:21 (5972): forwarding host port 65315 to guest port 80
2024-06-27 15:45:21 (5972): Enabling remote desktop for VM.
2024-06-27 15:45:22 (5972): Enabling shared directory for VM.
2024-06-27 15:45:22 (5972): Starting VM using VBoxManage interface. (boinc_5800a6d8ad51cbe8, slot#4)
2024-06-27 15:45:27 (5972): Successfully started VM. (PID = '14768')
2024-06-27 15:45:27 (5972): Reporting VM Process ID to BOINC.
2024-06-27 15:45:27 (5972): Guest Log: BIOS: VirtualBox 6.1.46
2024-06-27 15:45:27 (5972): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:45:27 (5972): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:45:27 (5972): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:45:27 (5972): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:45:27 (5972): Detected: Web Application Enabled (http://localhost:65315)
2024-06-27 15:45:27 (5972): Detected: Remote Desktop Enabled (localhost:65316)
2024-06-27 15:45:27 (5972): Preference change detected
2024-06-27 15:45:27 (5972): Setting CPU throttle for VM. (60%)
2024-06-27 15:45:27 (5972): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:45:29 (5972): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:45:29 (5972): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:45:32 (5972): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:45:32 (5972): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:45:32 (5972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:45:40 (5972): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:45:40 (5972): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:45:47 (5972): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000113 main     Log opened 2024-06-27T15:45:45.659042000Z
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000207 main     OS Product: Linux
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000227 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000244 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000259 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000260 main     Process ID: 1300
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000260 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:45:47 (5972): Guest Log: 00:00:00.000980 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:45:47 (5972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:45:47 (5972): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:45:47 (5972): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:45:57 (5972): Guest Log: 00:00:10.005660 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 693 936 000ns (GuestNow=1 719 495 956 968 479 000 ns GuestLast=1 719 503 145 662 415 000 ns fSetTimeLastLoop=true )
2024-06-27 15:47:42 (5972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:47:42 (5972): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:47:42 (5972): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:47:42 (5972): Guest Log: Copying input files
2024-06-27 15:47:48 (5972): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:47:48 (5972): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-27 15:47:48 (5972): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-27 15:47:48 (5972): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-27 15:47:48 (5972): Guest Log: Further information can be found at the LHC@home message board.
2024-06-27 15:49:31 (5972): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:49:31 (5972): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:49:31 (5972): Guest Log: 2.6.3.0 1611 2 30156 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-27 15:49:32 (5972): Guest Log: copied the webapp to /var/www
2024-06-27 15:49:32 (5972): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-27 15:49:32 (5972): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-27 15:49:32 (5972): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:49:32 (5972): Guest Log:  *** Starting ATLAS job. (PandaID=6246093143 taskID=40102831) ***
2024-06-27 18:37:11 (5972): Guest Log: 01:35:35.144933 timesync vgsvcTimeSyncWorker: Radical host time change: 3 815 836 000 000ns (HostNow=1 719 506 228 779 000 000 ns HostLast=1 719 502 412 943 000 000 ns)
2024-06-27 18:37:19 (5972): Guest Log: 01:35:45.177694 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 556 847 870 000ns (GuestNow=1 719 506 238 884 031 000 ns GuestLast=1 719 501 682 036 161 000 ns fSetTimeLastLoop=true )
2024-06-27 18:41:44 (5972): Status Report: Elapsed Time: '6000.432299'
2024-06-27 18:41:44 (5972): Status Report: CPU Time: '11479.953125'
2024-06-27 20:17:30 (5972): Preference change detected
2024-06-27 20:17:30 (5972): Setting CPU throttle for VM. (50%)
2024-06-27 20:17:30 (5972): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 20:21:46 (5972): Status Report: Elapsed Time: '12000.432299'
2024-06-27 20:21:46 (5972): Status Report: CPU Time: '25861.125000'
2024-06-27 22:01:47 (5972): Status Report: Elapsed Time: '18000.432299'
2024-06-27 22:01:47 (5972): Status Report: CPU Time: '40241.921875'
2024-06-27 23:41:48 (5972): Status Report: Elapsed Time: '24000.432299'
2024-06-27 23:41:48 (5972): Status Report: CPU Time: '54602.453125'
2024-06-28 08:10:39 (5972): Guest Log: 07:07:39.389487 timesync vgsvcTimeSyncWorker: Radical host time change: 28 908 720 000 000ns (HostNow=1 719 555 038 853 000 000 ns HostLast=1 719 526 130 133 000 000 ns)
2024-06-28 08:10:49 (5972): Guest Log: 07:07:49.402204 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 896 026 022 000ns (GuestNow=1 719 555 048 993 780 000 ns GuestLast=1 719 526 152 967 758 000 ns fSetTimeLastLoop=true )
2024-06-28 08:52:12 (5972): Guest Log:  *** Job finished ***
2024-06-28 08:52:12 (5972): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:51:58,586 | INFO     | [data] queue_monitor thread has finished
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:02,520 | INFO     | job.realtimelogging is not enabled
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:03,522 | INFO     | [payload] run_realtimelog thread has finished
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:04,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808237901632)>', '<ExcThread(monitor, started 139807292389120)>']
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:05,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:05,312 | INFO     | [monitor] control thread has ended
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,815 | INFO     | all workflow threads have been joined
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,816 | INFO     | end of generic workflow (traces error code: 0)
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,817 | INFO     | traces error code: 0
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,937 [wrapper] ==== pilot stdout END ====
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,943 [wrapper] ==== wrapper stdout RESUME ====
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,948 [wrapper] pilotpid: 6012
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:09,952 [wrapper] Pilot exit status: 0
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,012 [wrapper] pandaids: 6246093143
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,046 [wrapper] cleanup supervisor_pilot 30856 6013
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,051 [wrapper] Test setup, not cleaning
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,055 [wrapper] ==== wrapper stdout END ====
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,059 [wrapper] ==== wrapper stderr END ====
2024-06-28 08:52:12 (5972): Guest Log: 2024-06-28 06:52:10,066 [wrapper] apfmon messages muted
2024-06-28 08:52:12 (5972): Guest Log:  *** Error codes and diagnostics ***
2024-06-28 08:52:12 (5972): Guest Log:     "exeErrorCode": 0,
2024-06-28 08:52:12 (5972): Guest Log:     "exeErrorDiag": "",
2024-06-28 08:52:12 (5972): Guest Log:     "pilotErrorCode": 0,
2024-06-28 08:52:12 (5972): Guest Log:     "pilotErrorDiag": "",
2024-06-28 08:52:12 (5972): Guest Log:  *** Listing of results directory ***
2024-06-28 08:52:12 (5972): Guest Log: total 197836
2024-06-28 08:52:12 (5972): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-28 08:52:12 (5972): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:42 runpilot2-wrapper.sh
2024-06-28 08:52:12 (5972): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:49 queuedata.json
2024-06-28 08:52:12 (5972): Guest Log: -rwxr-xr-x. 1 atlas atlas      9167 Jun 27 13:47 init_data.xml
2024-06-28 08:52:12 (5972): Guest Log: -rwxr-xr-x. 1 atlas atlas    482502 Jun 27 13:47 input.tar.gz
2024-06-28 08:52:12 (5972): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 13:47 start_atlas.sh
2024-06-28 08:52:12 (5972): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:47 EVNT.34668720._000002.pool.root.1 -> /data/./ATLAS.root_0
2024-06-28 08:52:12 (5972): Guest Log: -rw-r--r--. 1 atlas atlas      2594 Jun 27 13:49 pandaJob.out
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas       424 Jun 27 13:49 setup.sh.local
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:51 agis_schedconf.cvmfs.json
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:51 cric_ddmendpoints.json
2024-06-28 08:52:12 (5972): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:51 pilot3
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas 194613906 Jun 28 06:50 HITS.40102831._000050.pool.root.1
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas      1026 Jun 28 06:50 memory_monitor_summary.json
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas         0 Jun 28 06:50 agis_ddmendpoints.agis.ALL.json
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas    404965 Jun 28 06:50 log.40102831._000050.job.log.tgz.1
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas        98 Jun 28 06:50 pilot_heartbeat.json
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas      7715 Jun 28 06:51 heartbeat.json
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 28 06:52 pilotlog.txt
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas   1840093 Jun 28 06:52 log.40102831._000050.job.log.1
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas       357 Jun 28 06:52 output.list
2024-06-28 08:52:12 (5972): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 28 06:52 runtime_log
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas   2263040 Jun 28 06:52 result.tar.gz
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas       644 Jun 28 06:52 uE0MDmRd3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmYzoKDm5skIcm.diag
2024-06-28 08:52:12 (5972): Guest Log: -rw-r--r--. 1 atlas atlas     10913 Jun 28 06:52 runtime_log.err
2024-06-28 08:52:12 (5972): Guest Log: Looking for outputfile HITS.40102831._000050.pool.root.1
2024-06-28 08:52:12 (5972): Guest Log: HITS file was successfully produced
2024-06-28 08:52:12 (5972): Guest Log: -rw-------. 1 atlas atlas 194613906 Jun 28 06:50 /home/atlas/RunAtlas/HITS.40102831._000050.pool.root.1
2024-06-28 08:52:13 (5972): Guest Log: Successfully finished the ATLAS job!
2024-06-28 08:52:13 (5972): Guest Log: Copying the results back to the shared directory!
2024-06-28 08:52:13 (5972): Guest Log:  *** Contents of shared directory: ***
2024-06-28 08:52:13 (5972): Guest Log: total 581688
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root 398246312 Jun 27 13:45 ATLAS.root_0
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root 194613906 Jun 28  2024 HITS.pool.root.1
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root      9167 Jun 27 13:45 init_data.xml
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root    482502 Jun 27 13:44 input.tar.gz
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root   2263040 Jun 28  2024 result.tar.gz
2024-06-28 08:52:13 (5972): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 13:44 start_atlas.sh
2024-06-28 08:52:13 (5972): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-28 08:52:13 (5972): VM Completion File Detected.
2024-06-28 08:52:13 (5972): Powering off VM.
2024-06-28 08:52:14 (5972): Successfully stopped VM.
2024-06-28 08:52:14 (5972): Deregistering VM. (boinc_5800a6d8ad51cbe8, slot#4)
2024-06-28 08:52:14 (5972): Removing network bandwidth throttle group from VM.
2024-06-28 08:52:14 (5972): Removing VM from VirtualBox.
08:52:20 (5972): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN