Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:20:37 (177842): wrapper (7.7.26015): starting
13:20:37 (177842): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 13:20:37] Arguments: --nthreads 12
[2024-06-27 13:20:37] Threads: 12
[2024-06-27 13:20:37] Checking for CVMFS
[2024-06-27 13:20:38] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 13:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 13:20:38] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 13:20:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 13:20:38] 2.10.1.0 2766 231820 121544 134357 3 288 34395158 45568001 6213 130560 0 698390692 99.771 439913059 12944 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-06-27 13:20:38] CVMFS is ok
[2024-06-27 13:20:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 13:20:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 13:20:38] Further information can be found at the LHC@home message board.
[2024-06-27 13:20:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 13:20:38] Checking for apptainer binary...
[2024-06-27 13:20:38] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 13:20:38] Running /usr/bin/apptainer --version
[2024-06-27 13:20:38] apptainer version 1.3.2-1.el7
[2024-06-27 13:20:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 13:20:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0085.triumf.lcg
[2024-06-27 13:20:41] apptainer works
[2024-06-27 13:20:41] Set ATHENA_PROC_NUMBER=12
[2024-06-27 13:20:41] Set ATHENA_CORE_NUMBER=12
[2024-06-27 13:20:41] Starting ATLAS job with PandaID=6246090581
[2024-06-27 13:20:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 14:13:33]  *** The last 200 lines of the pilot log: ***
[2024-06-27 14:13:33]  is_tar=False
[2024-06-27 14:13:33]  lfn=log.40102763._000015.job.log.tgz.1
[2024-06-27 14:13:33]  mtime=0
[2024-06-27 14:13:33]  protocol_id=None
[2024-06-27 14:13:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 14:13:33]  replicas=None
[2024-06-27 14:13:33]  scope=mc23_13p6TeV
[2024-06-27 14:13:33]  status=None
[2024-06-27 14:13:33]  status_code=0
[2024-06-27 14:13:33]  storage_token=
[2024-06-27 14:13:33]  surl=/home/boinc/slots/0/PanDA_Pilot-6246090581/log.40102763._000015.job.log.tgz.1
[2024-06-27 14:13:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/c9/log.40102763._000015.job.log.tgz.1
[2024-06-27 14:13:33]  workdir=None
[2024-06-27 14:13:33] ]
[2024-06-27 14:13:33] 2024-06-27 21:13:03,348 | INFO     | transferring file log.40102763._000015.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246090581/log.40102763._000015.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 14:13:33] 2024-06-27 21:13:03,348 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246090581/log.40102763._000015.job.log.tgz.1 /home/boinc/slots/0/log.40102763._000015.job.log.t
[2024-06-27 14:13:33] 2024-06-27 21:13:03,366 | INFO     | adding to output.list: log.40102763._000015.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/c9/log.40102763._000015.job.log.tg
[2024-06-27 14:13:33] 2024-06-27 21:13:03,367 | INFO     | summary of transferred files:
[2024-06-27 14:13:33] 2024-06-27 21:13:03,367 | INFO     |  -- lfn=log.40102763._000015.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 14:13:33] 2024-06-27 21:13:03,367 | INFO     | stage-out finished correctly
[2024-06-27 14:13:33] 2024-06-27 21:13:03,758 | INFO     | 3134s have passed since pilot start
[2024-06-27 14:13:33] 2024-06-27 21:13:04,624 | INFO     | monitor loop #249: job 0:6246090581 is in state 'finished'
[2024-06-27 14:13:33] 2024-06-27 21:13:04,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:13:33] 2024-06-27 21:13:06,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 14:13:33] 2024-06-27 21:13:07,127 | INFO     | monitor loop #250: job 0:6246090581 is in state 'finished'
[2024-06-27 14:13:33] 2024-06-27 21:13:07,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:13:33] 2024-06-27 21:13:09,122 | INFO     | job 6246090581 has state=finished
[2024-06-27 14:13:33] 2024-06-27 21:13:09,122 | INFO     | preparing for final server update for job 6246090581 in state='finished'
[2024-06-27 14:13:33] 2024-06-27 21:13:09,122 | INFO     | this job has now completed (state=finished)
[2024-06-27 14:13:33] 2024-06-27 21:13:09,123 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 14:13:33] 2024-06-27 21:13:09,123 | INFO     | job 6246090581 has finished - writing final server update
[2024-06-27 14:13:33] 2024-06-27 21:13:09,123 | INFO     | total number of processed events: 400 (read)
[2024-06-27 14:13:33] 2024-06-27 21:13:09,126 | INFO     | executing command: lscpu
[2024-06-27 14:13:33] 2024-06-27 21:13:09,162 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 14:13:33] 2024-06-27 21:13:09,163 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 14:13:33] 2024-06-27 21:13:09,198 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 14:13:33] 2024-06-27 21:13:09,631 | INFO     | monitor loop #251: job 0:6246090581 is in state 'finished'
[2024-06-27 14:13:33] 2024-06-27 21:13:09,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,134 | INFO     | monitor loop #252: job 0:6246090581 is in state 'finished'
[2024-06-27 14:13:33] 2024-06-27 21:13:12,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,369 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 14:13:33] 2024-06-27 21:13:12,370 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246090581/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,370 | INFO     | extracted standard info from prmon json
[2024-06-27 14:13:33] 2024-06-27 21:13:12,370 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 14:13:33] 2024-06-27 21:13:12,371 | WARNING  | GPU info not found in prmon json
[2024-06-27 14:13:33] 2024-06-27 21:13:12,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 14:13:33] 2024-06-27 21:13:12,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | fitting pss+swap vs Time
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | model: linear, x: [1719520018.0, 1719520079.0, 1719520140.0, 1719520201.0, 1719520262.0, 1719520323.0, 1719520384.0, 1719520445.0, 1719520506.0, 1719520567.0, 1719
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | sum of square deviations: 26400495.0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | sum of deviations: 14066144085.999998
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | mean x: 1719521329.5
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | mean y: 2381621.6363636362
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | -- intersect: -916156000245.7218
[2024-06-27 14:13:33] 2024-06-27 21:13:12,372 | INFO     | intersect: -916156000245.7218
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | chi2: 2.147168174868865
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | -- intersect: -916156000245.7218
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | current memory leak: 532.80 B/s (using 44 data points, chi2=2.15)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | ..............................
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . Timing measurements:
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . get job = 0 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . initial setup = 2 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . payload setup = 15 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . stage-in = 0 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . payload execution = 3075 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . stage-out = 0 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | . log creation = 0 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,373 | INFO     | ..............................
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | 
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | job summary report
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | --------------------------------------------------
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | PanDA job id: 6246090581
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | task id: 40102763
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | errors: (none)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | pilot state: finished 
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | transexitcode: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | exeerrorcode: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | exeerrordiag: 
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | exitcode: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | exitmsg: OK
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | cpuconsumptiontime: 24004 s
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | nevents: 400
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | neventsw: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | pid: 187929
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | pgrp: 187929
[2024-06-27 14:13:33] 2024-06-27 21:13:12,796 | INFO     | corecount: 12
[2024-06-27 14:13:33] 2024-06-27 21:13:12,797 | INFO     | event service: False
[2024-06-27 14:13:33] 2024-06-27 21:13:12,797 | INFO     | sizes: {0: 2387017, 11: 2387017, 21: 2387045, 25: 2387279, 32: 2387307, 3094: 2412682, 3096: 2421636, 3099: 2421692, 3105: 2421862}
[2024-06-27 14:13:33] 2024-06-27 21:13:12,797 | INFO     | --------------------------------------------------
[2024-06-27 14:13:33] 2024-06-27 21:13:12,797 | INFO     | 
[2024-06-27 14:13:33] 2024-06-27 21:13:12,797 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 14:13:33] 2024-06-27 21:13:12,813 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,815 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,815 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 14:13:33] 2024-06-27 21:13:12,815 | INFO     | job 6246090581 has completed (purged errors)
[2024-06-27 14:13:33] 2024-06-27 21:13:12,815 | INFO     | overall cleanup function is called
[2024-06-27 14:13:33] 2024-06-27 21:13:13,821 | INFO     | --- collectZombieJob: --- 10, [187929]
[2024-06-27 14:13:33] 2024-06-27 21:13:13,822 | INFO     | zombie collector waiting for pid 187929
[2024-06-27 14:13:33] 2024-06-27 21:13:13,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 14:13:33] 2024-06-27 21:13:14,827 | INFO     | collected zombie processes
[2024-06-27 14:13:33] 2024-06-27 21:13:14,827 | INFO     | will now attempt to kill all subprocesses of pid=187929
[2024-06-27 14:13:33] 2024-06-27 21:13:14,898 | INFO     | process IDs to be killed: [187929] (in reverse order)
[2024-06-27 14:13:33] 2024-06-27 21:13:14,958 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 14:13:33] 2024-06-27 21:13:14,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 14:13:33] 2024-06-27 21:13:14,963 | INFO     | did not find any defunct processes belonging to 187929
[2024-06-27 14:13:33] 2024-06-27 21:13:14,966 | INFO     | did not find any defunct processes belonging to 187929
[2024-06-27 14:13:33] 2024-06-27 21:13:14,966 | INFO     | ready for new job
[2024-06-27 14:13:33] 2024-06-27 21:13:14,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 14:13:33] 2024-06-27 21:13:14,967 | INFO     | *************************************
[2024-06-27 14:13:33] 2024-06-27 21:13:14,967 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 14:13:33] 2024-06-27 21:13:14,967 | INFO     | *************************************
[2024-06-27 14:13:33] 2024-06-27 21:13:14,967 | INFO     | 
[2024-06-27 14:13:33] 2024-06-27 21:13:14,970 | INFO     | architecture information:
[2024-06-27 14:13:33] 2024-06-27 21:13:14,970 | INFO     | executing command: cat /etc/os-release
[2024-06-27 14:13:33] 2024-06-27 21:13:14,984 | INFO     | cat /etc/os-release:
[2024-06-27 14:13:33] NAME="CentOS Linux"
[2024-06-27 14:13:33] VERSION="7 (Core)"
[2024-06-27 14:13:33] ID="centos"
[2024-06-27 14:13:33] ID_LIKE="rhel fedora"
[2024-06-27 14:13:33] VERSION_ID="7"
[2024-06-27 14:13:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 14:13:33] ANSI_COLOR="0;31"
[2024-06-27 14:13:33] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 14:13:33] HOME_URL="https://www.centos.org/"
[2024-06-27 14:13:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 14:13:33] 
[2024-06-27 14:13:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 14:13:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 14:13:33] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 14:13:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 14:13:33] 
[2024-06-27 14:13:33] 2024-06-27 21:13:14,984 | INFO     | *************************************
[2024-06-27 14:13:33] 2024-06-27 21:13:15,487 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 14:13:33] 2024-06-27 21:13:15,502 | INFO     | sufficient remaining disk space (2072783093760 B)
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 14:13:33] 2024-06-27 21:13:15,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 14:13:33] 2024-06-27 21:13:15,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:13:33] 2024-06-27 21:13:15,641 | INFO     | aborting loop
[2024-06-27 14:13:33] 2024-06-27 21:13:16,183 | INFO     | all payload control threads have been joined
[2024-06-27 14:13:33] 2024-06-27 21:13:16,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 14:13:33] 2024-06-27 21:13:16,505 | INFO     | [job] retrieve thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:16,555 | INFO     | all data control threads have been joined
[2024-06-27 14:13:33] 2024-06-27 21:13:16,646 | INFO     | [job] job monitor thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:16,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 14:13:33] 2024-06-27 21:13:16,857 | INFO     | all job control threads have been joined
[2024-06-27 14:13:33] 2024-06-27 21:13:17,017 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,091 | INFO     | [job] validate thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,188 | INFO     | [payload] control thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,222 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,343 | INFO     | [payload] validate_post thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,428 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:13:33] 2024-06-27 21:13:17,429 | INFO     | [data] copytool_in thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,558 | INFO     | [data] control thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,681 | INFO     | [payload] failed_post thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,857 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:17,863 | INFO     | [job] control thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:18,428 | INFO     | [job] queue monitor thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:18,433 | INFO     | [data] copytool_out thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:20,809 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:26,064 | INFO     | job.realtimelogging is not enabled
[2024-06-27 14:13:33] 2024-06-27 21:13:27,065 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 14:13:33] 2024-06-27 21:13:27,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764409182016)>', '<ExcThread(monitor, started 139763445122816)>']
[2024-06-27 14:13:33] 2024-06-27 21:13:27,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 14:13:33] 2024-06-27 21:13:27,558 | INFO     | [monitor] control thread has ended
[2024-06-27 14:13:33] 2024-06-27 21:13:32,170 | INFO     | all workflow threads have been joined
[2024-06-27 14:13:33] 2024-06-27 21:13:32,170 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 14:13:33] 2024-06-27 21:13:32,170 | INFO     | traces error code: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:32,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 14:13:33] 2024-06-27 21:13:32,288 [wrapper] ==== pilot stdout END ====
[2024-06-27 14:13:33] 2024-06-27 21:13:32,290 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 14:13:33] 2024-06-27 21:13:32,292 [wrapper] pilotpid: 181494
[2024-06-27 14:13:33] 2024-06-27 21:13:32,295 [wrapper] Pilot exit status: 0
[2024-06-27 14:13:33] 2024-06-27 21:13:32,302 [wrapper] pandaids: 6246090581
[2024-06-27 14:13:33] 2024-06-27 21:13:32,343 [wrapper] cleanup supervisor_pilot 238989 181495
[2024-06-27 14:13:33] 2024-06-27 21:13:32,346 [wrapper] Test setup, not cleaning
[2024-06-27 14:13:33] 2024-06-27 21:13:32,348 [wrapper] ==== wrapper stdout END ====
[2024-06-27 14:13:33] 2024-06-27 21:13:32,351 [wrapper] ==== wrapper stderr END ====
[2024-06-27 14:13:33] 2024-06-27 21:13:32,355 [wrapper] apfmon messages muted
[2024-06-27 14:13:33]  *** Error codes and diagnostics ***
[2024-06-27 14:13:33]     "exeErrorCode": 0,
[2024-06-27 14:13:33]     "exeErrorDiag": "",
[2024-06-27 14:13:33]     "pilotErrorCode": 0,
[2024-06-27 14:13:33]     "pilotErrorDiag": "",
[2024-06-27 14:13:33]  *** Listing of results directory ***
[2024-06-27 14:13:33] total 548324
[2024-06-27 14:13:33] -rwx------ 1 boinc boinc     32220 Jun 27 05:41 runpilot2-wrapper.sh
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc    469766 Jun 27 05:42 pilot3.tar.gz
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc      5654 Jun 27 05:49 queuedata.json
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc       100 Jun 27 13:20 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 14:13:33] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 13:20 run_atlas
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc       105 Jun 27 13:20 job.xml
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc 391481522 Jun 27 13:20 EVNT.34668127._000003.pool.root.1
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc      6628 Jun 27 13:20 init_data.xml
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:20 start_atlas.sh
[2024-06-27 14:13:33] drwxrwx--x 2 boinc boinc      4096 Jun 27 13:20 shared
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc    482503 Jun 27 13:20 input.tar.gz
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc         0 Jun 27 13:20 boinc_lockfile
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc      2594 Jun 27 13:20 pandaJob.out
[2024-06-27 14:13:33] -rw------- 1 boinc boinc       424 Jun 27 13:20 setup.sh.local
[2024-06-27 14:13:33] -rw------- 1 boinc boinc   1036876 Jun 27 13:20 agis_schedconf.cvmfs.json
[2024-06-27 14:13:33] -rw------- 1 boinc boinc         0 Jun 27 13:20 agis_ddmendpoints.agis.ALL.json
[2024-06-27 14:13:33] -rw------- 1 boinc boinc   1321378 Jun 27 13:20 cric_ddmendpoints.json
[2024-06-27 14:13:33] drwx------ 4 boinc boinc      4096 Jun 27 13:20 pilot3
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc       529 Jun 27 14:12 boinc_task_state.xml
[2024-06-27 14:13:33] -rw------- 1 boinc boinc 165137659 Jun 27 14:12 HITS.40102763._000015.pool.root.1
[2024-06-27 14:13:33] -rw------- 1 boinc boinc      1045 Jun 27 14:12 memory_monitor_summary.json
[2024-06-27 14:13:33] -rw------- 1 boinc boinc        95 Jun 27 14:13 pilot_heartbeat.json
[2024-06-27 14:13:33] -rw------- 1 boinc boinc    348567 Jun 27 14:13 log.40102763._000015.job.log.tgz.1
[2024-06-27 14:13:33] -rw------- 1 boinc boinc      7748 Jun 27 14:13 heartbeat.json
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc      8192 Jun 27 14:13 boinc_mmap_file
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc        27 Jun 27 14:13 wrapper_checkpoint.txt
[2024-06-27 14:13:33] -rw------- 1 boinc boinc      4405 Jun 27 14:13 pilotlog.txt
[2024-06-27 14:13:33] -rw------- 1 boinc boinc    310000 Jun 27 14:13 log.40102763._000015.job.log.1
[2024-06-27 14:13:33] -rw------- 1 boinc boinc       357 Jun 27 14:13 output.list
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc       620 Jun 27 14:13 runtime_log
[2024-06-27 14:13:33] -rw------- 1 boinc boinc    675840 Jun 27 14:13 result.tar.gz
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc     11286 Jun 27 14:13 runtime_log.err
[2024-06-27 14:13:33] -rw------- 1 boinc boinc       652 Jun 27 14:13 RQiLDmTc3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmAwoKDmv2uLTm.diag
[2024-06-27 14:13:33] -rw-r--r-- 1 boinc boinc     21907 Jun 27 14:13 stderr.txt
[2024-06-27 14:13:33] HITS file was successfully produced:
[2024-06-27 14:13:33] -rw------- 1 boinc boinc 165137659 Jun 27 14:12 shared/HITS.pool.root.1
[2024-06-27 14:13:33]  *** Contents of shared directory: ***
[2024-06-27 14:13:33] total 544736
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc 391481522 Jun 27 13:20 ATLAS.root_0
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:20 start_atlas.sh
[2024-06-27 14:13:33] -rw-r--r-- 2 boinc boinc    482503 Jun 27 13:20 input.tar.gz
[2024-06-27 14:13:33] -rw------- 1 boinc boinc 165137659 Jun 27 14:12 HITS.pool.root.1
[2024-06-27 14:13:33] -rw------- 1 boinc boinc    675840 Jun 27 14:13 result.tar.gz
14:13:34 (177842): run_atlas exited; CPU time 23937.941247
14:13:34 (177842): called boinc_finish(0)

</stderr_txt>
]]>

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