Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:45:27 (42680): Detected: vboxwrapper 26206
2024-06-27 15:45:27 (42680): Detected: BOINC client v8.0.2
2024-06-27 15:45:27 (42680): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-27 15:45:28 (42680): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:45:28 (42680): Create VM. (boinc_521b28fe14f7d7c1, slot#21)
2024-06-27 15:45:29 (42680): Setting Memory Size for VM. (4096MB)
2024-06-27 15:45:29 (42680): Setting CPU Count for VM. (1)
2024-06-27 15:45:29 (42680): Setting Chipset Options for VM.
2024-06-27 15:45:30 (42680): Setting Graphics Controller Options for VM.
2024-06-27 15:45:30 (42680): Setting Boot Options for VM.
2024-06-27 15:45:30 (42680): Setting Network Configuration for NAT.
2024-06-27 15:45:31 (42680): Enabling VM Network Access.
2024-06-27 15:45:31 (42680): Disabling USB Support for VM.
2024-06-27 15:45:31 (42680): Disabling COM Port Support for VM.
2024-06-27 15:45:31 (42680): Disabling LPT Port Support for VM.
2024-06-27 15:45:32 (42680): Disabling Audio Support for VM.
2024-06-27 15:45:32 (42680): Disabling Clipboard Support for VM.
2024-06-27 15:45:32 (42680): Disabling Drag and Drop Support for VM.
2024-06-27 15:45:32 (42680): Adding storage controller(s) to VM.
2024-06-27 15:45:33 (42680): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:45:33 (42680): Adding VirtualBox Guest Additions to VM.
2024-06-27 15:45:33 (42680): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:45:34 (42680): forwarding host port 59548 to guest port 80
2024-06-27 15:45:34 (42680): Enabling remote desktop for VM.
2024-06-27 15:45:34 (42680): Enabling shared directory for VM.
2024-06-27 15:45:35 (42680): Starting VM using VBoxManage interface. (boinc_521b28fe14f7d7c1, slot#21)
2024-06-27 15:45:40 (42680): Successfully started VM. (PID = '21428')
2024-06-27 15:45:40 (42680): Reporting VM Process ID to BOINC.
2024-06-27 15:45:40 (42680): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-27 15:45:40 (42680): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:45:40 (42680): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:45:40 (42680): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:45:40 (42680): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:45:40 (42680): Detected: Web Application Enabled (http://localhost:59548)
2024-06-27 15:45:40 (42680): Detected: Remote Desktop Enabled (localhost:59549)
2024-06-27 15:45:40 (42680): Preference change detected
2024-06-27 15:45:40 (42680): Setting CPU throttle for VM. (100%)
2024-06-27 15:45:40 (42680): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:45:42 (42680): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:45:42 (42680): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:45:44 (42680): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:45:44 (42680): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:45:44 (42680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:45:47 (42680): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:45:47 (42680): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:45:52 (42680): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000142 main     Log opened 2024-06-27T15:45:50.189646000Z
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000225 main     OS Product: Linux
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000242 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000255 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000268 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000268 main     Process ID: 1236
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.000268 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:45:52 (42680): Guest Log: 00:00:00.001284 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:45:52 (42680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:45:52 (42680): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:45:52 (42680): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:46:02 (42680): Guest Log: 00:00:10.013229 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 048 425 000ns (GuestNow=1 719 495 961 154 136 000 ns GuestLast=1 719 503 150 202 561 000 ns fSetTimeLastLoop=true )
2024-06-27 15:47:33 (42680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:47:33 (42680): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:47:33 (42680): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:47:33 (42680): Guest Log: Copying input files
2024-06-27 15:47:34 (42680): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:47:34 (42680): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-06-27 15:47:42 (42680): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:47:43 (42680): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:47:43 (42680): Guest Log: 2.6.3.0 1542 0 29508 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-06-27 15:47:43 (42680): Guest Log: copied the webapp to /var/www
2024-06-27 15:47:43 (42680): Guest Log: core_number=1
2024-06-27 15:47:43 (42680): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:47:43 (42680): Guest Log:  *** Starting ATLAS job. (PandaID=6246093047 taskID=40102835) ***
2024-06-27 17:25:42 (42680): Status Report: Elapsed Time: '6000.000000'
2024-06-27 17:25:42 (42680): Status Report: CPU Time: '5052.250000'
2024-06-27 19:05:45 (42680): Status Report: Elapsed Time: '12000.000000'
2024-06-27 19:05:45 (42680): Status Report: CPU Time: '11046.828125'
2024-06-27 20:45:47 (42680): Status Report: Elapsed Time: '18000.000000'
2024-06-27 20:45:47 (42680): Status Report: CPU Time: '17040.968750'
2024-06-27 22:25:49 (42680): Status Report: Elapsed Time: '24000.000000'
2024-06-27 22:25:49 (42680): Status Report: CPU Time: '23034.640625'
2024-06-28 00:05:52 (42680): Status Report: Elapsed Time: '30000.000000'
2024-06-28 00:05:52 (42680): Status Report: CPU Time: '29028.359375'
2024-06-28 01:45:54 (42680): Status Report: Elapsed Time: '36000.000000'
2024-06-28 01:45:54 (42680): Status Report: CPU Time: '35022.343750'
2024-06-28 03:25:57 (42680): Status Report: Elapsed Time: '42000.000000'
2024-06-28 03:25:57 (42680): Status Report: CPU Time: '41015.437500'
2024-06-28 05:05:59 (42680): Status Report: Elapsed Time: '48000.000000'
2024-06-28 05:05:59 (42680): Status Report: CPU Time: '47008.859375'
2024-06-28 06:01:16 (42680): Guest Log:  *** Job finished ***
2024-06-28 06:01:16 (42680): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:45,533 | INFO     | [data] queue_monitor thread has finished
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:52,087 | INFO     | job.realtimelogging is not enabled
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:53,088 | INFO     | [payload] run_realtimelog thread has finished
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:53,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675355154240)>', '<ExcThread(monitor, started 140674909320960)>']
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:54,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:54,138 | INFO     | [monitor] control thread has ended
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:58,934 | INFO     | all workflow threads have been joined
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:58,934 | INFO     | end of generic workflow (traces error code: 0)
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:58,934 | INFO     | traces error code: 0
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:58,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,009 [wrapper] ==== pilot stdout END ====
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,011 [wrapper] ==== wrapper stdout RESUME ====
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,013 [wrapper] pilotpid: 5835
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,014 [wrapper] Pilot exit status: 0
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,044 [wrapper] pandaids: 6246093047
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,052 [wrapper] cleanup supervisor_pilot 16005 5836
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,054 [wrapper] Test setup, not cleaning
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,056 [wrapper] ==== wrapper stdout END ====
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,057 [wrapper] ==== wrapper stderr END ====
2024-06-28 06:01:16 (42680): Guest Log: 2024-06-28 04:00:59,060 [wrapper] apfmon messages muted
2024-06-28 06:01:16 (42680): Guest Log:  *** Error codes and diagnostics ***
2024-06-28 06:01:16 (42680): Guest Log:     "exeErrorCode": 0,
2024-06-28 06:01:16 (42680): Guest Log:     "exeErrorDiag": "",
2024-06-28 06:01:16 (42680): Guest Log:     "pilotErrorCode": 0,
2024-06-28 06:01:16 (42680): Guest Log:     "pilotErrorDiag": "",
2024-06-28 06:01:16 (42680): Guest Log:  *** Listing of results directory ***
2024-06-28 06:01:16 (42680): Guest Log: total 207084
2024-06-28 06:01:16 (42680): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-28 06:01:16 (42680): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:42 runpilot2-wrapper.sh
2024-06-28 06:01:16 (42680): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:49 queuedata.json
2024-06-28 06:01:16 (42680): Guest Log: -rwxr-xr-x. 1 atlas atlas      9304 Jun 27 13:47 init_data.xml
2024-06-28 06:01:16 (42680): Guest Log: -rwxr-xr-x. 1 atlas atlas    482511 Jun 27 13:47 input.tar.gz
2024-06-28 06:01:16 (42680): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 13:47 start_atlas.sh
2024-06-28 06:01:16 (42680): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:47 EVNT.34668736._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-28 06:01:16 (42680): Guest Log: -rw-r--r--. 1 atlas atlas      2594 Jun 27 13:47 pandaJob.out
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas       460 Jun 27 13:47 setup.sh.local
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:47 agis_schedconf.cvmfs.json
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:47 cric_ddmendpoints.json
2024-06-28 06:01:16 (42680): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:47 pilot3
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas 193132523 Jun 28 03:59 HITS.40102835._000017.pool.root.1
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas      1021 Jun 28 03:59 memory_monitor_summary.json
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas         0 Jun 28 03:59 agis_ddmendpoints.agis.ALL.json
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas    714614 Jun 28 03:59 log.40102835._000017.job.log.tgz.1
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas        95 Jun 28 03:59 pilot_heartbeat.json
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas      7688 Jun 28 04:00 heartbeat.json
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 28 04:00 pilotlog.txt
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas   7006260 Jun 28 04:00 log.40102835._000017.job.log.1
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas       357 Jun 28 04:00 output.list
2024-06-28 06:01:16 (42680): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 28 04:00 runtime_log
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas   7741440 Jun 28 04:00 result.tar.gz
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas       647 Jun 28 04:00 T5NODmsd3g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmuMZKDmy54mIn.diag
2024-06-28 06:01:16 (42680): Guest Log: -rw-r--r--. 1 atlas atlas     11170 Jun 28 04:00 runtime_log.err
2024-06-28 06:01:16 (42680): Guest Log: Looking for outputfile HITS.40102835._000017.pool.root.1
2024-06-28 06:01:16 (42680): Guest Log: HITS file was successfully produced
2024-06-28 06:01:16 (42680): Guest Log: -rw-------. 1 atlas atlas 193132523 Jun 28 03:59 /home/atlas/RunAtlas/HITS.40102835._000017.pool.root.1
2024-06-28 06:01:17 (42680): Guest Log: Successfully finished the ATLAS job!
2024-06-28 06:01:17 (42680): Guest Log: Copying the results back to the shared directory!
2024-06-28 06:01:17 (42680): Guest Log:  *** Contents of shared directory: ***
2024-06-28 06:01:17 (42680): Guest Log: total 584792
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root 397432132 Jun 27 13:45 ATLAS.root_0
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root 193132523 Jun 28  2024 HITS.pool.root.1
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root      9304 Jun 27 13:45 init_data.xml
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root    482511 Jun 27 13:45 input.tar.gz
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root   7741440 Jun 28  2024 result.tar.gz
2024-06-28 06:01:17 (42680): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 13:45 start_atlas.sh
2024-06-28 06:01:17 (42680): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-28 06:01:17 (42680): VM Completion File Detected.
2024-06-28 06:01:17 (42680): Powering off VM.
2024-06-28 06:01:18 (42680): Successfully stopped VM.
2024-06-28 06:01:18 (42680): Deregistering VM. (boinc_521b28fe14f7d7c1, slot#21)
2024-06-28 06:01:18 (42680): Removing network bandwidth throttle group from VM.
2024-06-28 06:01:18 (42680): Removing VM from VirtualBox.
06:01:23 (42680): called boinc_finish(0)

</stderr_txt>
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