Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:55:19 (541731): Detected: vboxwrapper 26206
2024-06-27 15:55:19 (541731): Detected: BOINC client v7.24.1
2024-06-27 15:55:20 (541731): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-27 15:55:20 (541731): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:55:20 (541731): Create VM. (boinc_159e3763f6d74e63, slot#0)
2024-06-27 15:55:20 (541731): Setting Memory Size for VM. (4600MB)
2024-06-27 15:55:20 (541731): Setting CPU Count for VM. (6)
2024-06-27 15:55:20 (541731): Setting Chipset Options for VM.
2024-06-27 15:55:20 (541731): Setting Graphics Controller Options for VM.
2024-06-27 15:55:20 (541731): Setting Boot Options for VM.
2024-06-27 15:55:20 (541731): Setting Network Configuration for NAT.
2024-06-27 15:55:20 (541731): Enabling VM Network Access.
2024-06-27 15:55:20 (541731): Disabling USB Support for VM.
2024-06-27 15:55:20 (541731): Disabling COM Port Support for VM.
2024-06-27 15:55:20 (541731): Disabling LPT Port Support for VM.
2024-06-27 15:55:20 (541731): Disabling Audio Support for VM.
2024-06-27 15:55:20 (541731): Disabling Clipboard Support for VM.
2024-06-27 15:55:20 (541731): Disabling Drag and Drop Support for VM.
2024-06-27 15:55:20 (541731): Adding storage controller(s) to VM.
2024-06-27 15:55:20 (541731): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:55:21 (541731): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:55:21 (541731): forwarding host port 44089 to guest port 80
2024-06-27 15:55:21 (541731): Enabling remote desktop for VM.
2024-06-27 15:55:21 (541731): Required extension pack not installed, remote desktop not enabled.
2024-06-27 15:55:21 (541731): Enabling shared directory for VM.
2024-06-27 15:55:21 (541731): Starting VM using VBoxManage interface. (boinc_159e3763f6d74e63, slot#0)
2024-06-27 15:55:23 (541731): Successfully started VM. (PID = '541987')
2024-06-27 15:55:23 (541731): Reporting VM Process ID to BOINC.
2024-06-27 15:55:23 (541731): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-27 15:55:23 (541731): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:55:23 (541731): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:55:23 (541731): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:55:23 (541731): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:55:23 (541731): Detected: Web Application Enabled (http://localhost:44089)
2024-06-27 15:55:23 (541731): Preference change detected
2024-06-27 15:55:23 (541731): Setting CPU throttle for VM. (50%)
2024-06-27 15:55:23 (541731): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:55:25 (541731): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:55:25 (541731): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:55:28 (541731): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:55:28 (541731): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:55:28 (541731): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:55:33 (541731): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:55:33 (541731): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:55:38 (541731): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000078 main     Log opened 2024-06-27T13:55:37.055780000Z
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000149 main     OS Product: Linux
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000166 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000183 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000192 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000192 main     Process ID: 1326
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000193 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:55:38 (541731): Guest Log: 00:00:00.000601 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:55:38 (541731): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:55:38 (541731): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:55:38 (541731): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:55:39 (541731): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:55:39 (541731): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:55:39 (541731): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:55:39 (541731): Guest Log: Copying input files
2024-06-27 15:55:41 (541731): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:55:41 (541731): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-27 15:55:41 (541731): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-27 15:55:41 (541731): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-27 15:55:41 (541731): Guest Log: Further information can be found at the LHC@home message board.
2024-06-27 15:55:48 (541731): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:55:48 (541731): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:55:48 (541731): Guest Log: 2.6.3.0 1601 0 32268 134351 4 1 3117206 4096000 0 65024 0 0 n/a 1 12 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-27 15:55:49 (541731): Guest Log: copied the webapp to /var/www
2024-06-27 15:55:49 (541731): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-27 15:55:49 (541731): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-27 15:55:49 (541731): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:55:49 (541731): Guest Log:  *** Starting ATLAS job. (PandaID=6246092075 taskID=40102819) ***
2024-06-27 17:34:23 (541731): Status Report: Elapsed Time: '6000.000000'
2024-06-27 17:34:23 (541731): Status Report: CPU Time: '14404.960000'
2024-06-27 19:13:23 (541731): Status Report: Elapsed Time: '12000.000000'
2024-06-27 19:13:23 (541731): Status Report: CPU Time: '31428.400000'
2024-06-27 19:48:48 (541731): Guest Log:  *** Job finished ***
2024-06-27 19:48:48 (541731): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:40,099 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:41,100 | INFO     | [job] queue monitor thread has finished
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:41,755 | INFO     | [data] queue_monitor thread has finished
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:41,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269460399936)>', '<ExcThread(monitor, started 140268699367168)>']
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:42,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:42,771 | INFO     | [monitor] control thread has ended
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,822 | INFO     | all workflow threads have been joined
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,822 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,822 | INFO     | traces error code: 0
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,866 [wrapper] ==== pilot stdout END ====
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,868 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,870 [wrapper] pilotpid: 5968
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,872 [wrapper] Pilot exit status: 0
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,882 [wrapper] pandaids: 6246092075
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,896 [wrapper] cleanup supervisor_pilot 12706 5969
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,898 [wrapper] Test setup, not cleaning
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,901 [wrapper] ==== wrapper stdout END ====
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,903 [wrapper] ==== wrapper stderr END ====
2024-06-27 19:48:48 (541731): Guest Log: 2024-06-27 17:48:46,912 [wrapper] apfmon messages muted
2024-06-27 19:48:48 (541731): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 19:48:48 (541731): Guest Log:     "exeErrorCode": 0,
2024-06-27 19:48:48 (541731): Guest Log:     "exeErrorDiag": "",
2024-06-27 19:48:48 (541731): Guest Log:     "pilotErrorCode": 0,
2024-06-27 19:48:48 (541731): Guest Log:     "pilotErrorDiag": "",
2024-06-27 19:48:48 (541731): Guest Log:  *** Listing of results directory ***
2024-06-27 19:48:48 (541731): Guest Log: total 186048
2024-06-27 19:48:48 (541731): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:41 runpilot2-wrapper.sh
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:49 queuedata.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas    482503 Jun 27 13:55 input.tar.gz
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas      6886 Jun 27 13:55 init_data.xml
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 27 13:55 start_atlas.sh
2024-06-27 19:48:48 (541731): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:55 EVNT.34668603._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas      2592 Jun 27 13:55 pandaJob.out
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas       424 Jun 27 13:55 setup.sh.local
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:56 agis_schedconf.cvmfs.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:56 cric_ddmendpoints.json
2024-06-27 19:48:48 (541731): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:56 pilot3
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas 184862670 Jun 27 17:46 HITS.40102819._000008.pool.root.1
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas      1031 Jun 27 17:47 memory_monitor_summary.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 17:47 agis_ddmendpoints.agis.ALL.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas    315444 Jun 27 17:47 log.40102819._000008.job.log.tgz.1
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 17:47 pilot_heartbeat.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas      7720 Jun 27 17:48 heartbeat.json
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 27 17:48 pilotlog.txt
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas    771910 Jun 27 17:48 log.40102819._000008.job.log.1
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 17:48 output.list
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 17:48 runtime_log
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas   1105920 Jun 27 17:48 result.tar.gz
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 atlas atlas     11021 Jun 27 17:48 runtime_log.err
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas       676 Jun 27 17:48 9P5MDmzc3g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmHLZKDmqCTmum.diag
2024-06-27 19:48:48 (541731): Guest Log: Looking for outputfile HITS.40102819._000008.pool.root.1
2024-06-27 19:48:48 (541731): Guest Log: HITS file was successfully produced
2024-06-27 19:48:48 (541731): Guest Log: -rw-------. 1 atlas atlas 184862670 Jun 27 17:46 /home/atlas/RunAtlas/HITS.40102819._000008.pool.root.1
2024-06-27 19:48:48 (541731): Guest Log: Successfully finished the ATLAS job!
2024-06-27 19:48:48 (541731): Guest Log: Copying the results back to the shared directory!
2024-06-27 19:48:48 (541731): Guest Log:  *** Contents of shared directory: ***
2024-06-27 19:48:48 (541731): Guest Log: total 391096
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 root root 398860867 Jun 27 13:55 ATLAS.root_0
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 root root      6886 Jun 27 13:55 init_data.xml
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 root root    482503 Jun 27 13:55 input.tar.gz
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 root root   1105920 Jun 27  2024 result.tar.gz
2024-06-27 19:48:48 (541731): Guest Log: -rw-r--r--. 1 root root     17537 Jun 27 13:55 start_atlas.sh
2024-06-27 19:48:48 (541731): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 19:48:48 (541731): VM Completion File Detected.
2024-06-27 19:48:48 (541731): Powering off VM.
2024-06-27 19:48:48 (541731): Successfully stopped VM.
2024-06-27 19:48:48 (541731): Deregistering VM. (boinc_159e3763f6d74e63, slot#0)
2024-06-27 19:48:48 (541731): Removing network bandwidth throttle group from VM.
2024-06-27 19:48:48 (541731): Removing VM from VirtualBox.
19:48:53 (541731): called boinc_finish(0)

</stderr_txt>
]]>

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