Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
10:12:02 (222231): wrapper (7.7.26015): starting
10:12:02 (222231): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 10:12:02] Arguments: --nthreads 12
[2024-06-27 10:12:02] Threads: 12
[2024-06-27 10:12:02] Checking for CVMFS
[2024-06-27 10:12:03] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 10:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 10:12:03] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 10:12:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 10:12:03] 2.10.1.0 2816 231544 173752 134353 1 636 26501196 45568001 7490 130560 0 1368242857 99.753 900155280 19156 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-06-27 10:12:03] CVMFS is ok
[2024-06-27 10:12:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 10:12:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 10:12:03] Further information can be found at the LHC@home message board.
[2024-06-27 10:12:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 10:12:03] Checking for apptainer binary...
[2024-06-27 10:12:03] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 10:12:03] Running /usr/bin/apptainer --version
[2024-06-27 10:12:03] apptainer version 1.3.2-1.el7
[2024-06-27 10:12:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 10:12:04] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0074.triumf.lcg
[2024-06-27 10:12:04] apptainer works
[2024-06-27 10:12:04] Set ATHENA_PROC_NUMBER=12
[2024-06-27 10:12:04] Set ATHENA_CORE_NUMBER=12
[2024-06-27 10:12:04] Starting ATLAS job with PandaID=6246089703
[2024-06-27 10:12:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 11:47:07]  *** The last 200 lines of the pilot log: ***
[2024-06-27 11:47:07]  direct_access_lan=False
[2024-06-27 11:47:07]  direct_access_wan=False
[2024-06-27 11:47:07]  domain=
[2024-06-27 11:47:07]  filesize=363297
[2024-06-27 11:47:07]  filetype=log
[2024-06-27 11:47:07]  guid=88c0fa16-ac6f-4e50-803a-4e96baad74d2
[2024-06-27 11:47:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-27 11:47:07]  is_tar=False
[2024-06-27 11:47:07]  lfn=log.40102741._000030.job.log.tgz.1
[2024-06-27 11:47:07]  mtime=0
[2024-06-27 11:47:07]  protocol_id=None
[2024-06-27 11:47:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 11:47:07]  replicas=None
[2024-06-27 11:47:07]  scope=mc23_13p6TeV
[2024-06-27 11:47:07]  status=None
[2024-06-27 11:47:07]  status_code=0
[2024-06-27 11:47:07]  storage_token=
[2024-06-27 11:47:07]  surl=/home/boinc/slots/0/PanDA_Pilot-6246089703/log.40102741._000030.job.log.tgz.1
[2024-06-27 11:47:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/c3/log.40102741._000030.job.log.tgz.1
[2024-06-27 11:47:07]  workdir=None
[2024-06-27 11:47:07] ]
[2024-06-27 11:47:07] 2024-06-27 18:46:40,720 | INFO     | transferring file log.40102741._000030.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246089703/log.40102741._000030.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 11:47:07] 2024-06-27 18:46:40,721 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246089703/log.40102741._000030.job.log.tgz.1 /home/boinc/slots/0/log.40102741._000030.job.log.t
[2024-06-27 11:47:07] 2024-06-27 18:46:40,746 | INFO     | adding to output.list: log.40102741._000030.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/c3/log.40102741._000030.job.log.tg
[2024-06-27 11:47:07] 2024-06-27 18:46:40,747 | INFO     | summary of transferred files:
[2024-06-27 11:47:07] 2024-06-27 18:46:40,747 | INFO     |  -- lfn=log.40102741._000030.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 11:47:07] 2024-06-27 18:46:40,748 | INFO     | stage-out finished correctly
[2024-06-27 11:47:07] 2024-06-27 18:46:40,828 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 11:47:07] 2024-06-27 18:46:41,577 | INFO     | job 6246089703 has state=finished
[2024-06-27 11:47:07] 2024-06-27 18:46:41,577 | INFO     | preparing for final server update for job 6246089703 in state='finished'
[2024-06-27 11:47:07] 2024-06-27 18:46:41,578 | INFO     | this job has now completed (state=finished)
[2024-06-27 11:47:07] 2024-06-27 18:46:41,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 11:47:07] 2024-06-27 18:46:41,579 | INFO     | job 6246089703 has finished - writing final server update
[2024-06-27 11:47:07] 2024-06-27 18:46:41,579 | INFO     | total number of processed events: 400 (read)
[2024-06-27 11:47:07] 2024-06-27 18:46:41,585 | INFO     | executing command: lscpu
[2024-06-27 11:47:07] 2024-06-27 18:46:41,650 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 11:47:07] 2024-06-27 18:46:41,650 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 11:47:07] 2024-06-27 18:46:41,717 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 11:47:07] 2024-06-27 18:46:45,351 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 11:47:07] 2024-06-27 18:46:45,352 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246089703/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 11:47:07] 2024-06-27 18:46:45,360 | INFO     | extracted standard info from prmon json
[2024-06-27 11:47:07] 2024-06-27 18:46:45,361 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 11:47:07] 2024-06-27 18:46:45,361 | WARNING  | GPU info not found in prmon json
[2024-06-27 11:47:07] 2024-06-27 18:46:45,362 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 11:47:07] 2024-06-27 18:46:45,362 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 11:47:07] 2024-06-27 18:46:45,366 | INFO     | fitting pss+swap vs Time
[2024-06-27 11:47:07] 2024-06-27 18:46:45,366 | INFO     | model: linear, x: [1719508661.0, 1719508722.0, 1719508783.0, 1719508844.0, 1719508905.0, 1719508966.0, 1719509027.0, 1719509088.0, 1719509149.0, 1719509210.0, 1719
[2024-06-27 11:47:07] 2024-06-27 18:46:45,366 | INFO     | sum of square deviations: 197206596.8837212
[2024-06-27 11:47:07] 2024-06-27 18:46:45,367 | INFO     | sum of deviations: 34718900475.86046
[2024-06-27 11:47:07] 2024-06-27 18:46:45,367 | INFO     | mean x: 1719511253.6744187
[2024-06-27 11:47:07] 2024-06-27 18:46:45,367 | INFO     | mean y: 2787111.2093023257
[2024-06-27 11:47:07] 2024-06-27 18:46:45,367 | INFO     | -- intersect: -302723090353.4517
[2024-06-27 11:47:07] 2024-06-27 18:46:45,367 | INFO     | intersect: -302723090353.4517
[2024-06-27 11:47:07] 2024-06-27 18:46:45,368 | INFO     | chi2: 2.1891187176754574
[2024-06-27 11:47:07] 2024-06-27 18:46:45,368 | INFO     | -- intersect: -302723090353.4517
[2024-06-27 11:47:07] 2024-06-27 18:46:45,368 | INFO     | current memory leak: 176.05 B/s (using 86 data points, chi2=2.19)
[2024-06-27 11:47:07] 2024-06-27 18:46:45,369 | INFO     | ..............................
[2024-06-27 11:47:07] 2024-06-27 18:46:45,369 | INFO     | . Timing measurements:
[2024-06-27 11:47:07] 2024-06-27 18:46:45,369 | INFO     | . get job = 0 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,369 | INFO     | . initial setup = 2 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | . payload setup = 4 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | . stage-in = 0 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | . payload execution = 5644 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | . stage-out = 0 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | . log creation = 0 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,370 | INFO     | ..............................
[2024-06-27 11:47:07] 2024-06-27 18:46:45,462 | INFO     | 
[2024-06-27 11:47:07] 2024-06-27 18:46:45,462 | INFO     | job summary report
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | --------------------------------------------------
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | PanDA job id: 6246089703
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | task id: 40102741
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | errors: (none)
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | pilot state: finished 
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | transexitcode: 0
[2024-06-27 11:47:07] 2024-06-27 18:46:45,463 | INFO     | exeerrorcode: 0
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | exeerrordiag: 
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | exitcode: 0
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | exitmsg: OK
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | cpuconsumptiontime: 28069 s
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | nevents: 400
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | neventsw: 0
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | pid: 232262
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | pgrp: 232262
[2024-06-27 11:47:07] 2024-06-27 18:46:45,464 | INFO     | corecount: 12
[2024-06-27 11:47:07] 2024-06-27 18:46:45,465 | INFO     | event service: False
[2024-06-27 11:47:07] 2024-06-27 18:46:45,465 | INFO     | sizes: {0: 2386843, 1: 2387042, 4: 2387248, 11: 2387276, 5652: 2413828, 5653: 2422966, 5658: 2423080}
[2024-06-27 11:47:07] 2024-06-27 18:46:45,465 | INFO     | 5674s have passed since pilot start
[2024-06-27 11:47:07] 2024-06-27 18:46:45,465 | INFO     | --------------------------------------------------
[2024-06-27 11:47:07] 2024-06-27 18:46:45,466 | INFO     | 
[2024-06-27 11:47:07] 2024-06-27 18:46:45,466 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 11:47:07] 2024-06-27 18:46:45,478 | WARNING  | process 232262 is no longer using CPU - aborting
[2024-06-27 11:47:07] 2024-06-27 18:46:45,478 | INFO     | aborting job monitoring since job object (job id=6246089703) has expired
[2024-06-27 11:47:07] 2024-06-27 18:46:45,508 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,509 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,510 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 11:47:07] 2024-06-27 18:46:45,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,511 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 11:47:07] 2024-06-27 18:46:45,511 | INFO     | job 6246089703 has completed (purged errors)
[2024-06-27 11:47:07] 2024-06-27 18:46:45,511 | INFO     | overall cleanup function is called
[2024-06-27 11:47:07] 2024-06-27 18:46:46,520 | INFO     | --- collectZombieJob: --- 10, [232262]
[2024-06-27 11:47:07] 2024-06-27 18:46:46,521 | INFO     | zombie collector waiting for pid 232262
[2024-06-27 11:47:07] 2024-06-27 18:46:46,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 11:47:07] 2024-06-27 18:46:47,527 | INFO     | collected zombie processes
[2024-06-27 11:47:07] 2024-06-27 18:46:47,528 | INFO     | will now attempt to kill all subprocesses of pid=232262
[2024-06-27 11:47:07] 2024-06-27 18:46:47,651 | INFO     | process IDs to be killed: [232262] (in reverse order)
[2024-06-27 11:47:07] 2024-06-27 18:46:47,758 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 11:47:07] 2024-06-27 18:46:47,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 11:47:07] 2024-06-27 18:46:47,767 | INFO     | did not find any defunct processes belonging to 232262
[2024-06-27 11:47:07] 2024-06-27 18:46:47,774 | INFO     | did not find any defunct processes belonging to 232262
[2024-06-27 11:47:07] 2024-06-27 18:46:47,774 | INFO     | ready for new job
[2024-06-27 11:47:07] 2024-06-27 18:46:47,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 11:47:07] 2024-06-27 18:46:47,777 | INFO     | *************************************
[2024-06-27 11:47:07] 2024-06-27 18:46:47,777 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 11:47:07] 2024-06-27 18:46:47,777 | INFO     | *************************************
[2024-06-27 11:47:07] 2024-06-27 18:46:47,777 | INFO     | 
[2024-06-27 11:47:07] 2024-06-27 18:46:47,782 | INFO     | architecture information:
[2024-06-27 11:47:07] 2024-06-27 18:46:47,783 | INFO     | executing command: cat /etc/os-release
[2024-06-27 11:47:07] 2024-06-27 18:46:47,808 | INFO     | cat /etc/os-release:
[2024-06-27 11:47:07] NAME="CentOS Linux"
[2024-06-27 11:47:07] VERSION="7 (Core)"
[2024-06-27 11:47:07] ID="centos"
[2024-06-27 11:47:07] ID_LIKE="rhel fedora"
[2024-06-27 11:47:07] VERSION_ID="7"
[2024-06-27 11:47:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 11:47:07] ANSI_COLOR="0;31"
[2024-06-27 11:47:07] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 11:47:07] HOME_URL="https://www.centos.org/"
[2024-06-27 11:47:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 11:47:07] 
[2024-06-27 11:47:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 11:47:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 11:47:07] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 11:47:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 11:47:07] 
[2024-06-27 11:47:07] 2024-06-27 18:46:47,809 | INFO     | *************************************
[2024-06-27 11:47:07] 2024-06-27 18:46:48,312 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 11:47:07] 2024-06-27 18:46:48,338 | INFO     | sufficient remaining disk space (1998893088768 B)
[2024-06-27 11:47:07] 2024-06-27 18:46:48,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 11:47:07] 2024-06-27 18:46:48,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 11:47:07] 2024-06-27 18:46:48,477 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 11:47:07] 2024-06-27 18:46:48,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 11:47:07] 2024-06-27 18:46:48,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 11:47:07] 2024-06-27 18:46:48,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 11:47:07] 2024-06-27 18:46:48,909 | INFO     | all data control threads have been joined
[2024-06-27 11:47:07] 2024-06-27 18:46:48,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 11:47:07] 2024-06-27 18:46:48,988 | INFO     | aborting loop
[2024-06-27 11:47:07] 2024-06-27 18:46:48,998 | INFO     | all job control threads have been joined
[2024-06-27 11:47:07] 2024-06-27 18:46:49,226 | INFO     | all payload control threads have been joined
[2024-06-27 11:47:07] 2024-06-27 18:46:49,343 | INFO     | [payload] failed_post thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,345 | INFO     | [job] retrieve thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,718 | INFO     | [data] copytool_in thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,739 | INFO     | [job] validate thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,888 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,915 | INFO     | [data] control thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,945 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:49,994 | INFO     | [job] job monitor thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:50,003 | INFO     | [job] control thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:50,230 | INFO     | [payload] control thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:50,424 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:50,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 11:47:07] 2024-06-27 18:46:50,627 | INFO     | [payload] validate_post thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:50,845 | INFO     | [data] copytool_out thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:51,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 11:47:07] 2024-06-27 18:46:51,474 | INFO     | [job] queue monitor thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:55,407 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:46:58,516 | INFO     | job.realtimelogging is not enabled
[2024-06-27 11:47:07] 2024-06-27 18:46:59,522 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 11:47:07] 2024-06-27 18:47:00,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650156324672)>', '<ExcThread(monitor, started 140649869321984)>']
[2024-06-27 11:47:07] 2024-06-27 18:47:01,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 11:47:07] 2024-06-27 18:47:01,537 | INFO     | [monitor] control thread has ended
[2024-06-27 11:47:07] 2024-06-27 18:47:05,811 | INFO     | all workflow threads have been joined
[2024-06-27 11:47:07] 2024-06-27 18:47:05,812 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 11:47:07] 2024-06-27 18:47:05,812 | INFO     | traces error code: 0
[2024-06-27 11:47:07] 2024-06-27 18:47:05,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 11:47:07] 2024-06-27 18:47:05,914 [wrapper] ==== pilot stdout END ====
[2024-06-27 11:47:07] 2024-06-27 18:47:05,917 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 11:47:07] 2024-06-27 18:47:05,920 [wrapper] pilotpid: 225867
[2024-06-27 11:47:07] 2024-06-27 18:47:05,924 [wrapper] Pilot exit status: 0
[2024-06-27 11:47:07] 2024-06-27 18:47:05,936 [wrapper] pandaids: 6246089703
[2024-06-27 11:47:07] 2024-06-27 18:47:05,993 [wrapper] cleanup supervisor_pilot  89693 225868
[2024-06-27 11:47:07] 2024-06-27 18:47:05,996 [wrapper] Test setup, not cleaning
[2024-06-27 11:47:07] 2024-06-27 18:47:05,998 [wrapper] ==== wrapper stdout END ====
[2024-06-27 11:47:07] 2024-06-27 18:47:06,000 [wrapper] ==== wrapper stderr END ====
[2024-06-27 11:47:07] 2024-06-27 18:47:06,005 [wrapper] apfmon messages muted
[2024-06-27 11:47:07]  *** Error codes and diagnostics ***
[2024-06-27 11:47:07]     "exeErrorCode": 0,
[2024-06-27 11:47:07]     "exeErrorDiag": "",
[2024-06-27 11:47:07]     "pilotErrorCode": 0,
[2024-06-27 11:47:07]     "pilotErrorDiag": "",
[2024-06-27 11:47:07]  *** Listing of results directory ***
[2024-06-27 11:47:07] total 562596
[2024-06-27 11:47:07] -rwx------ 1 boinc boinc     32220 Jun 27 05:40 runpilot2-wrapper.sh
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc      5654 Jun 27 05:41 queuedata.json
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc    469766 Jun 27 05:42 pilot3.tar.gz
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc       100 Jun 27 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 11:47:07] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 10:12 run_atlas
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc       105 Jun 27 10:12 job.xml
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc 393395698 Jun 27 10:12 EVNT.34667931._000004.pool.root.1
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc      6627 Jun 27 10:12 init_data.xml
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc     17537 Jun 27 10:12 start_atlas.sh
[2024-06-27 11:47:07] drwxrwx--x 2 boinc boinc      4096 Jun 27 10:12 shared
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc    482492 Jun 27 10:12 input.tar.gz
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc         0 Jun 27 10:12 boinc_lockfile
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc      2605 Jun 27 10:12 pandaJob.out
[2024-06-27 11:47:07] -rw------- 1 boinc boinc       424 Jun 27 10:12 setup.sh.local
[2024-06-27 11:47:07] -rw------- 1 boinc boinc   1034827 Jun 27 10:12 agis_schedconf.cvmfs.json
[2024-06-27 11:47:07] -rw------- 1 boinc boinc         0 Jun 27 10:12 agis_ddmendpoints.agis.ALL.json
[2024-06-27 11:47:07] -rw------- 1 boinc boinc   1321363 Jun 27 10:12 cric_ddmendpoints.json
[2024-06-27 11:47:07] drwx------ 4 boinc boinc      4096 Jun 27 10:12 pilot3
[2024-06-27 11:47:07] -rw------- 1 boinc boinc 177420202 Jun 27 11:46 HITS.40102741._000030.pool.root.1
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc       529 Jun 27 11:46 boinc_task_state.xml
[2024-06-27 11:47:07] -rw------- 1 boinc boinc      1048 Jun 27 11:46 memory_monitor_summary.json
[2024-06-27 11:47:07] -rw------- 1 boinc boinc    363297 Jun 27 11:46 log.40102741._000030.job.log.tgz.1
[2024-06-27 11:47:07] -rw------- 1 boinc boinc        95 Jun 27 11:46 pilot_heartbeat.json
[2024-06-27 11:47:07] -rw------- 1 boinc boinc      7745 Jun 27 11:46 heartbeat.json
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc      8192 Jun 27 11:47 boinc_mmap_file
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc        27 Jun 27 11:47 wrapper_checkpoint.txt
[2024-06-27 11:47:07] -rw------- 1 boinc boinc      4282 Jun 27 11:47 pilotlog.txt
[2024-06-27 11:47:07] -rw------- 1 boinc boinc    503620 Jun 27 11:47 log.40102741._000030.job.log.1
[2024-06-27 11:47:07] -rw------- 1 boinc boinc       357 Jun 27 11:47 output.list
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc       620 Jun 27 11:47 runtime_log
[2024-06-27 11:47:07] -rw------- 1 boinc boinc    890880 Jun 27 11:47 result.tar.gz
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc     11286 Jun 27 11:47 runtime_log.err
[2024-06-27 11:47:07] -rw------- 1 boinc boinc       649 Jun 27 11:47 kewLDmyb3g5n7Olcko1bjSoqABFKDmABFKDmOtvXDmq0rKDmQueeOo.diag
[2024-06-27 11:47:07] -rw-r--r-- 1 boinc boinc     21298 Jun 27 11:47 stderr.txt
[2024-06-27 11:47:07] HITS file was successfully produced:
[2024-06-27 11:47:07] -rw------- 1 boinc boinc 177420202 Jun 27 11:46 shared/HITS.pool.root.1
[2024-06-27 11:47:07]  *** Contents of shared directory: ***
[2024-06-27 11:47:07] total 558812
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc 393395698 Jun 27 10:12 ATLAS.root_0
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc     17537 Jun 27 10:12 start_atlas.sh
[2024-06-27 11:47:07] -rw-r--r-- 2 boinc boinc    482492 Jun 27 10:12 input.tar.gz
[2024-06-27 11:47:07] -rw------- 1 boinc boinc 177420202 Jun 27 11:46 HITS.pool.root.1
[2024-06-27 11:47:07] -rw------- 1 boinc boinc    890880 Jun 27 11:47 result.tar.gz
11:47:09 (222231): run_atlas exited; CPU time 27939.918033
11:47:09 (222231): called boinc_finish(0)

</stderr_txt>
]]>

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