Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:14:26 (12516): Detected: vboxwrapper 26206
2024-06-27 15:14:26 (12516): Detected: BOINC client v8.0.2
2024-06-27 15:14:27 (12516): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-27 15:14:27 (12516): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:14:28 (12516): Create VM. (boinc_3b6ec157f2f03cba, slot#16)
2024-06-27 15:14:28 (12516): Setting Memory Size for VM. (4400MB)
2024-06-27 15:14:28 (12516): Setting CPU Count for VM. (4)
2024-06-27 15:14:29 (12516): Setting Chipset Options for VM.
2024-06-27 15:14:29 (12516): Setting Graphics Controller Options for VM.
2024-06-27 15:14:29 (12516): Setting Boot Options for VM.
2024-06-27 15:14:29 (12516): Setting Network Configuration for NAT.
2024-06-27 15:14:30 (12516): Enabling VM Network Access.
2024-06-27 15:14:30 (12516): Disabling USB Support for VM.
2024-06-27 15:14:30 (12516): Disabling COM Port Support for VM.
2024-06-27 15:14:31 (12516): Disabling LPT Port Support for VM.
2024-06-27 15:14:31 (12516): Disabling Audio Support for VM.
2024-06-27 15:14:31 (12516): Disabling Clipboard Support for VM.
2024-06-27 15:14:31 (12516): Disabling Drag and Drop Support for VM.
2024-06-27 15:14:32 (12516): Adding storage controller(s) to VM.
2024-06-27 15:14:32 (12516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:14:35 (12516): Adding VirtualBox Guest Additions to VM.
2024-06-27 15:14:35 (12516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:14:35 (12516): forwarding host port 59785 to guest port 80
2024-06-27 15:14:35 (12516): Enabling remote desktop for VM.
2024-06-27 15:14:36 (12516): Enabling shared directory for VM.
2024-06-27 15:14:37 (12516): Starting VM using VBoxManage interface. (boinc_3b6ec157f2f03cba, slot#16)
2024-06-27 15:14:42 (12516): Successfully started VM. (PID = '12464')
2024-06-27 15:14:42 (12516): Reporting VM Process ID to BOINC.
2024-06-27 15:14:42 (12516): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-27 15:14:42 (12516): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:14:42 (12516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:14:42 (12516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:14:42 (12516): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:14:42 (12516): Detected: Web Application Enabled (http://localhost:59785)
2024-06-27 15:14:42 (12516): Detected: Remote Desktop Enabled (localhost:59786)
2024-06-27 15:14:42 (12516): Preference change detected
2024-06-27 15:14:42 (12516): Setting CPU throttle for VM. (100%)
2024-06-27 15:14:42 (12516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:14:44 (12516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:14:44 (12516): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:14:47 (12516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:14:47 (12516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:14:47 (12516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:15:14 (12516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:15:14 (12516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:15:21 (12516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000087 main     Log opened 2024-06-27T15:15:19.523337000Z
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000153 main     OS Product: Linux
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000173 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000188 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000204 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000204 main     Process ID: 1305
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000204 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:15:21 (12516): Guest Log: 00:00:00.000903 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:15:21 (12516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:15:21 (12516): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:15:21 (12516): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:15:24 (12516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:15:24 (12516): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:15:24 (12516): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:15:24 (12516): Guest Log: Copying input files
2024-06-27 15:15:26 (12516): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:15:26 (12516): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-27 15:15:26 (12516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-27 15:15:26 (12516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-27 15:15:26 (12516): Guest Log: Further information can be found at the LHC@home message board.
2024-06-27 15:15:31 (12516): Guest Log: 00:00:10.015722 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 213 111 188 000ns (GuestNow=1 719 494 106 424 359 000 ns GuestLast=1 719 501 319 535 547 000 ns fSetTimeLastLoop=true )
2024-06-27 15:15:35 (12516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:15:35 (12516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:15:35 (12516): Guest Log: 2.6.3.0 1580 0 32148 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-27 15:15:36 (12516): Guest Log: copied the webapp to /var/www
2024-06-27 15:15:36 (12516): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-27 15:15:36 (12516): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-27 15:15:36 (12516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:15:36 (12516): Guest Log:  *** Starting ATLAS job. (PandaID=6246092155 taskID=40102811) ***
2024-06-27 16:54:46 (12516): Status Report: Elapsed Time: '6000.000000'
2024-06-27 16:54:46 (12516): Status Report: CPU Time: '18003.500000'
2024-06-27 18:34:50 (12516): Status Report: Elapsed Time: '12000.000000'
2024-06-27 18:34:50 (12516): Status Report: CPU Time: '40526.921875'
2024-06-27 19:15:58 (12516): Guest Log:  *** Job finished ***
2024-06-27 19:15:58 (12516): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:21,126 | INFO     | [data] queue_monitor thread has finished
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:24,510 | INFO     | job.realtimelogging is not enabled
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:25,534 | INFO     | [payload] run_realtimelog thread has finished
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:25,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698428503872)>', '<ExcThread(monitor, started 140697449506560)>']
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:26,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:26,538 | INFO     | [monitor] control thread has ended
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,876 | INFO     | all workflow threads have been joined
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,876 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,876 | INFO     | traces error code: 0
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,958 [wrapper] ==== pilot stdout END ====
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,962 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,966 [wrapper] pilotpid: 5974
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:30,969 [wrapper] Pilot exit status: 0
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,058 [wrapper] pandaids: 6246092155
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,081 [wrapper] cleanup supervisor_pilot 13940 5975
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,085 [wrapper] Test setup, not cleaning
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,089 [wrapper] ==== wrapper stdout END ====
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,093 [wrapper] ==== wrapper stderr END ====
2024-06-27 19:15:58 (12516): Guest Log: 2024-06-27 17:15:31,101 [wrapper] apfmon messages muted
2024-06-27 19:15:58 (12516): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 19:15:58 (12516): Guest Log:     "exeErrorCode": 0,
2024-06-27 19:15:58 (12516): Guest Log:     "exeErrorDiag": "",
2024-06-27 19:15:58 (12516): Guest Log:     "pilotErrorCode": 0,
2024-06-27 19:15:58 (12516): Guest Log:     "pilotErrorDiag": "",
2024-06-27 19:15:58 (12516): Guest Log:  *** Listing of results directory ***
2024-06-27 19:15:58 (12516): Guest Log: total 176164
2024-06-27 19:15:58 (12516): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:41 runpilot2-wrapper.sh
2024-06-27 19:15:58 (12516): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:42 pilot3.tar.gz
2024-06-27 19:15:58 (12516): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:43 queuedata.json
2024-06-27 19:15:58 (12516): Guest Log: -rwxr-xr-x. 1 atlas atlas      9336 Jun 27 13:15 init_data.xml
2024-06-27 19:15:58 (12516): Guest Log: -rwxr-xr-x. 1 atlas atlas    482508 Jun 27 13:15 input.tar.gz
2024-06-27 19:15:58 (12516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 13:15 start_atlas.sh
2024-06-27 19:15:58 (12516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:15 EVNT.34668539._000002.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 19:15:58 (12516): Guest Log: -rw-r--r--. 1 atlas atlas      2595 Jun 27 13:15 pandaJob.out
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas       424 Jun 27 13:15 setup.sh.local
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:17 agis_schedconf.cvmfs.json
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:17 cric_ddmendpoints.json
2024-06-27 19:15:58 (12516): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:17 pilot3
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas 174316973 Jun 27 17:13 HITS.40102811._000038.pool.root.1
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas      1025 Jun 27 17:14 memory_monitor_summary.json
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 17:14 agis_ddmendpoints.agis.ALL.json
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas    307361 Jun 27 17:14 log.40102811._000038.job.log.tgz.1
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 17:14 pilot_heartbeat.json
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas      7691 Jun 27 17:15 heartbeat.json
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 27 17:15 pilotlog.txt
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas    990130 Jun 27 17:15 log.40102811._000038.job.log.1
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 17:15 output.list
2024-06-27 19:15:58 (12516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 17:15 runtime_log
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas   1320960 Jun 27 17:15 result.tar.gz
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas       649 Jun 27 17:15 t8KMDmzc3g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmpKZKDmnRtZMn.diag
2024-06-27 19:15:58 (12516): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Jun 27 17:15 runtime_log.err
2024-06-27 19:15:58 (12516): Guest Log: Looking for outputfile HITS.40102811._000038.pool.root.1
2024-06-27 19:15:58 (12516): Guest Log: HITS file was successfully produced
2024-06-27 19:15:58 (12516): Guest Log: -rw-------. 1 atlas atlas 174316973 Jun 27 17:13 /home/atlas/RunAtlas/HITS.40102811._000038.pool.root.1
2024-06-27 19:15:59 (12516): Guest Log: Successfully finished the ATLAS job!
2024-06-27 19:15:59 (12516): Guest Log: Copying the results back to the shared directory!
2024-06-27 19:15:59 (12516): Guest Log:  *** Contents of shared directory: ***
2024-06-27 19:15:59 (12516): Guest Log: total 557504
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root 394726242 Jun 27 13:14 ATLAS.root_0
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root 174316973 Jun 27  2024 HITS.pool.root.1
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root      9336 Jun 27 13:14 init_data.xml
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root    482508 Jun 27 13:13 input.tar.gz
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root   1320960 Jun 27  2024 result.tar.gz
2024-06-27 19:15:59 (12516): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 13:13 start_atlas.sh
2024-06-27 19:15:59 (12516): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 19:15:59 (12516): VM Completion File Detected.
2024-06-27 19:15:59 (12516): Powering off VM.
2024-06-27 19:16:00 (12516): Successfully stopped VM.
2024-06-27 19:16:00 (12516): Deregistering VM. (boinc_3b6ec157f2f03cba, slot#16)
2024-06-27 19:16:00 (12516): Removing network bandwidth throttle group from VM.
2024-06-27 19:16:00 (12516): Removing VM from VirtualBox.
19:16:05 (12516): called boinc_finish(0)

</stderr_txt>
]]>

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