Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 15:11:32 (90004): Detected: vboxwrapper 26206
2024-06-27 15:11:32 (90004): Detected: BOINC client v8.0.2
2024-06-27 15:11:33 (90004): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-27 15:11:33 (90004): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 15:11:34 (90004): Create VM. (boinc_04d0f4ca84099a60, slot#63)
2024-06-27 15:11:34 (90004): Setting Memory Size for VM. (4250MB)
2024-06-27 15:11:35 (90004): Setting CPU Count for VM. (6)
2024-06-27 15:11:35 (90004): Setting Chipset Options for VM.
2024-06-27 15:11:35 (90004): Setting Graphics Controller Options for VM.
2024-06-27 15:11:35 (90004): Setting Boot Options for VM.
2024-06-27 15:11:36 (90004): Setting Network Configuration for NAT.
2024-06-27 15:11:36 (90004): Enabling VM Network Access.
2024-06-27 15:11:36 (90004): Disabling USB Support for VM.
2024-06-27 15:11:36 (90004): Disabling COM Port Support for VM.
2024-06-27 15:11:37 (90004): Disabling LPT Port Support for VM.
2024-06-27 15:11:37 (90004): Disabling Audio Support for VM.
2024-06-27 15:11:37 (90004): Disabling Clipboard Support for VM.
2024-06-27 15:11:38 (90004): Disabling Drag and Drop Support for VM.
2024-06-27 15:11:38 (90004): Adding storage controller(s) to VM.
2024-06-27 15:11:38 (90004): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 15:11:41 (90004): Adding VirtualBox Guest Additions to VM.
2024-06-27 15:11:41 (90004): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 15:11:41 (90004): forwarding host port 60052 to guest port 80
2024-06-27 15:11:42 (90004): Enabling remote desktop for VM.
2024-06-27 15:11:42 (90004): Enabling shared directory for VM.
2024-06-27 15:11:43 (90004): Starting VM using VBoxManage interface. (boinc_04d0f4ca84099a60, slot#63)
2024-06-27 15:11:50 (90004): Successfully started VM. (PID = '68148')
2024-06-27 15:11:50 (90004): Reporting VM Process ID to BOINC.
2024-06-27 15:11:50 (90004): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-27 15:11:50 (90004): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 15:11:50 (90004): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 15:11:50 (90004): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 15:11:50 (90004): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 15:11:50 (90004): Detected: Web Application Enabled (http://localhost:60052)
2024-06-27 15:11:50 (90004): Detected: Remote Desktop Enabled (localhost:60054)
2024-06-27 15:11:50 (90004): Preference change detected
2024-06-27 15:11:50 (90004): Setting CPU throttle for VM. (100%)
2024-06-27 15:11:50 (90004): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 15:11:52 (90004): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 15:11:52 (90004): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 15:11:55 (90004): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 15:11:55 (90004): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 15:11:55 (90004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 15:12:00 (90004): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 15:12:00 (90004): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 15:12:06 (90004): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000152 main     Log opened 2024-06-27T15:12:04.664155000Z
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000249 main     OS Product: Linux
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000277 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000300 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000323 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000323 main     Process ID: 1324
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.000324 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 15:12:06 (90004): Guest Log: 00:00:00.001211 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 15:12:06 (90004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 15:12:06 (90004): Guest Log: [INFO] Mounting shared directory
2024-06-27 15:12:06 (90004): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 15:12:16 (90004): Guest Log: 00:00:10.006792 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 280 141 000ns (GuestNow=1 719 493 935 386 762 000 ns GuestLast=1 719 501 124 666 903 000 ns fSetTimeLastLoop=true )
2024-06-27 15:13:05 (90004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 15:13:05 (90004): Guest Log: [INFO] Detected branch: prod
2024-06-27 15:13:06 (90004): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 15:13:06 (90004): Guest Log: Copying input files
2024-06-27 15:13:08 (90004): Guest Log: Copied input files into RunAtlas.
2024-06-27 15:13:08 (90004): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2024-06-27 15:13:52 (90004): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 15:13:52 (90004): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 15:13:52 (90004): Guest Log: 2.6.3.0 1625 0 31660 134351 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2024-06-27 15:13:53 (90004): Guest Log: copied the webapp to /var/www
2024-06-27 15:13:53 (90004): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-27 15:13:53 (90004): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-27 15:13:53 (90004): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 15:13:53 (90004): Guest Log:  *** Starting ATLAS job. (PandaID=6246089785 taskID=40102727) ***
2024-06-27 16:51:54 (90004): Status Report: Elapsed Time: '6000.000000'
2024-06-27 16:51:54 (90004): Status Report: CPU Time: '24705.828125'
2024-06-27 18:03:06 (90004): Guest Log:  *** Job finished ***
2024-06-27 18:03:06 (90004): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:51,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:52,817 | INFO     | [job] queue monitor thread has finished
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:53,547 | INFO     | [data] queue_monitor thread has finished
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:55,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823559935808)>', '<ExcThread(monitor, started 139822450599680)>']
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:55,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:02:55,593 | INFO     | [monitor] control thread has ended
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,211 | INFO     | all workflow threads have been joined
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,211 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,211 | INFO     | traces error code: 0
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,307 [wrapper] ==== pilot stdout END ====
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,314 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,320 [wrapper] pilotpid: 6045
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:00,326 [wrapper] Pilot exit status: 0
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,311 [wrapper] pandaids: 6246089785
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,353 [wrapper] cleanup supervisor_pilot 10252 6046
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,359 [wrapper] Test setup, not cleaning
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,365 [wrapper] ==== wrapper stdout END ====
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,372 [wrapper] ==== wrapper stderr END ====
2024-06-27 18:03:06 (90004): Guest Log: 2024-06-27 16:03:01,386 [wrapper] apfmon messages muted
2024-06-27 18:03:06 (90004): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 18:03:06 (90004): Guest Log:     "exeErrorCode": 0,
2024-06-27 18:03:06 (90004): Guest Log:     "exeErrorDiag": "",
2024-06-27 18:03:06 (90004): Guest Log:     "pilotErrorCode": 0,
2024-06-27 18:03:06 (90004): Guest Log:     "pilotErrorDiag": "",
2024-06-27 18:03:06 (90004): Guest Log:  *** Listing of results directory ***
2024-06-27 18:03:06 (90004): Guest Log: total 191420
2024-06-27 18:03:06 (90004): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 27 12:40 runpilot2-wrapper.sh
2024-06-27 18:03:06 (90004): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 27 12:41 pilot3.tar.gz
2024-06-27 18:03:06 (90004): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 27 12:41 queuedata.json
2024-06-27 18:03:06 (90004): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 13:13 start_atlas.sh
2024-06-27 18:03:06 (90004): Guest Log: -rwxr-xr-x. 1 atlas atlas    482502 Jun 27 13:13 input.tar.gz
2024-06-27 18:03:06 (90004): Guest Log: -rwxr-xr-x. 1 atlas atlas      9013 Jun 27 13:13 init_data.xml
2024-06-27 18:03:06 (90004): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 13:13 EVNT.34667847._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 18:03:06 (90004): Guest Log: -rw-r--r--. 1 atlas atlas      2592 Jun 27 13:13 pandaJob.out
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas       461 Jun 27 13:14 setup.sh.local
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 13:19 agis_schedconf.cvmfs.json
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 13:19 agis_ddmendpoints.agis.ALL.json
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 13:19 cric_ddmendpoints.json
2024-06-27 18:03:06 (90004): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 13:20 pilot3
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas 190567834 Jun 27 16:01 HITS.40102727._000009.pool.root.1
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas      1034 Jun 27 16:01 memory_monitor_summary.json
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas    299460 Jun 27 16:01 log.40102727._000009.job.log.tgz.1
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 16:02 pilot_heartbeat.json
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas      7715 Jun 27 16:02 heartbeat.json
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 27 16:03 pilotlog.txt
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas    682190 Jun 27 16:03 log.40102727._000009.job.log.1
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 16:03 output.list
2024-06-27 18:03:06 (90004): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 16:03 runtime_log
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas   1003520 Jun 27 16:03 result.tar.gz
2024-06-27 18:03:06 (90004): Guest Log: -rw-r--r--. 1 atlas atlas     11291 Jun 27 16:03 runtime_log.err
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas       643 Jun 27 16:03 OcdLDmVb3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmlsoKDmZL2UEo.diag
2024-06-27 18:03:06 (90004): Guest Log: Looking for outputfile HITS.40102727._000009.pool.root.1
2024-06-27 18:03:06 (90004): Guest Log: HITS file was successfully produced
2024-06-27 18:03:06 (90004): Guest Log: -rw-------. 1 atlas atlas 190567834 Jun 27 16:01 /home/atlas/RunAtlas/HITS.40102727._000009.pool.root.1
2024-06-27 18:03:08 (90004): Guest Log: Successfully finished the ATLAS job!
2024-06-27 18:03:08 (90004): Guest Log: Copying the results back to the shared directory!
2024-06-27 18:03:08 (90004): Guest Log:  *** Contents of shared directory: ***
2024-06-27 18:03:08 (90004): Guest Log: total 577148
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root 398908634 Jun 27 13:11 ATLAS.root_0
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root 190567834 Jun 27  2024 HITS.pool.root.1
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root      9013 Jun 27 13:11 init_data.xml
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root    482502 Jun 27 13:01 input.tar.gz
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root   1003520 Jun 27  2024 result.tar.gz
2024-06-27 18:03:08 (90004): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 27 13:01 start_atlas.sh
2024-06-27 18:03:08 (90004): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 18:03:08 (90004): VM Completion File Detected.
2024-06-27 18:03:08 (90004): Powering off VM.
2024-06-27 18:03:09 (90004): Successfully stopped VM.
2024-06-27 18:03:09 (90004): Deregistering VM. (boinc_04d0f4ca84099a60, slot#63)
2024-06-27 18:03:09 (90004): Removing network bandwidth throttle group from VM.
2024-06-27 18:03:09 (90004): Removing VM from VirtualBox.
18:03:14 (90004): called boinc_finish(0)

</stderr_txt>
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