Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:03:31 (987197): wrapper (7.7.26015): starting
17:03:31 (987197): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 17:03:31] Arguments: --nthreads 4
[2024-06-27 17:03:31] Threads: 4
[2024-06-27 17:03:31] Checking for CVMFS
[2024-06-27 17:03:31] No cvmfs_config command found, will try listing directly
[2024-06-27 17:03:31] CVMFS is ok
[2024-06-27 17:03:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 17:03:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 17:03:31] Further information can be found at the LHC@home message board.
[2024-06-27 17:03:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 17:03:31] Checking for apptainer binary...
[2024-06-27 17:03:31] which: no apptainer in ((null))
[2024-06-27 17:03:31] apptainer is not installed, using version from CVMFS
[2024-06-27 17:03:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 17:03:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2024-06-27 17:03:32] apptainer works
[2024-06-27 17:03:32] Set ATHENA_PROC_NUMBER=4
[2024-06-27 17:03:32] Set ATHENA_CORE_NUMBER=4
[2024-06-27 17:03:32] Starting ATLAS job with PandaID=6246089014
[2024-06-27 17:03:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:25:07 (1017175): wrapper (7.7.26015): starting
17:25:07 (1017175): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 17:25:07] Arguments: --nthreads 4
[2024-06-27 17:25:07] Threads: 4
[2024-06-27 17:25:07] This job has been restarted, cleaning up previous attempt
[2024-06-27 17:25:07] Checking for CVMFS
[2024-06-27 17:25:07] No cvmfs_config command found, will try listing directly
[2024-06-27 17:25:07] CVMFS is ok
[2024-06-27 17:25:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 17:25:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 17:25:07] Further information can be found at the LHC@home message board.
[2024-06-27 17:25:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 17:25:07] Checking for apptainer binary...
[2024-06-27 17:25:07] which: no apptainer in ((null))
[2024-06-27 17:25:07] apptainer is not installed, using version from CVMFS
[2024-06-27 17:25:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 17:25:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2024-06-27 17:25:08] apptainer works
[2024-06-27 17:25:08] Set ATHENA_PROC_NUMBER=4
[2024-06-27 17:25:08] Set ATHENA_CORE_NUMBER=4
[2024-06-27 17:25:08] Starting ATLAS job with PandaID=6246089014
[2024-06-27 17:25:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 19:39:27]  *** The last 200 lines of the pilot log: ***
[2024-06-27 19:39:27] 2024-06-27 17:39:06,233 | INFO     | chi2: 3.909744088012149
[2024-06-27 19:39:27] 2024-06-27 17:39:06,233 | INFO     | current chi2=3.909744088012149 (change=0.34076930569302627 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,233 | INFO     | right removable region: 125
[2024-06-27 19:39:27] 2024-06-27 17:39:06,234 | INFO     | model: linear, x: [1719502265.0, 1719502326.0, 1719502387.0, 1719502448.0, 1719502509.0, 1719502570.0, 1719502631.0, 1719502692.0, 1719502753.0, 1719502814.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,234 | INFO     | sum of square deviations: 620244187.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | sum of deviations: 25173535723.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | mean x: 1719506077.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | mean y: 2400112.785714286
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | -- intersect: -69786319461.02184
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | intersect: -69786319461.02184
[2024-06-27 19:39:27] 2024-06-27 17:39:06,235 | INFO     | chi2: 1.5096516652114234
[2024-06-27 19:39:27] 2024-06-27 17:39:06,236 | INFO     | current chi2=1.5096516652114234 (change=61.51903547021045 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,236 | INFO     | model: linear, x: [1719502570.0, 1719502631.0, 1719502692.0, 1719502753.0, 1719502814.0, 1719502875.0, 1719502936.0, 1719502997.0, 1719503058.0, 1719503119.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,236 | INFO     | sum of square deviations: 549294020.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,237 | INFO     | sum of deviations: 1021454943.0000004
[2024-06-27 19:39:27] 2024-06-27 17:39:06,237 | INFO     | mean x: 1719506230.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,237 | INFO     | mean y: 2452044.776859504
[2024-06-27 19:39:27] 2024-06-27 17:39:06,237 | INFO     | -- intersect: -3195103497.7953963
[2024-06-27 19:39:27] 2024-06-27 17:39:06,237 | INFO     | intersect: -3195103497.7953963
[2024-06-27 19:39:27] 2024-06-27 17:39:06,238 | INFO     | chi2: 0.0941487273279454
[2024-06-27 19:39:27] 2024-06-27 17:39:06,238 | INFO     | current chi2=0.0941487273279454 (change=93.76354628703304 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,238 | INFO     | model: linear, x: [1719502875.0, 1719502936.0, 1719502997.0, 1719503058.0, 1719503119.0, 1719503180.0, 1719503241.0, 1719503302.0, 1719503363.0, 1719503424.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,238 | INFO     | sum of square deviations: 483971865.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,239 | INFO     | sum of deviations: -2988861743.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,239 | INFO     | mean x: 1719506382.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,239 | INFO     | mean y: 2461198.974137931
[2024-06-27 19:39:27] 2024-06-27 17:39:06,239 | INFO     | -- intersect: 10621605029.490665
[2024-06-27 19:39:27] 2024-06-27 17:39:06,239 | INFO     | intersect: 10621605029.490665
[2024-06-27 19:39:27] 2024-06-27 17:39:06,240 | INFO     | chi2: 0.005623749241348447
[2024-06-27 19:39:27] 2024-06-27 17:39:06,240 | INFO     | current chi2=0.005623749241348447 (change=94.02673896827153 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,240 | INFO     | model: linear, x: [1719503180.0, 1719503241.0, 1719503302.0, 1719503363.0, 1719503424.0, 1719503485.0, 1719503546.0, 1719503607.0, 1719503668.0, 1719503729.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,240 | INFO     | sum of square deviations: 424045160.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,241 | INFO     | sum of deviations: -3299876740.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,241 | INFO     | mean x: 1719506535.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,241 | INFO     | mean y: 2461982.7657657657
[2024-06-27 19:39:27] 2024-06-27 17:39:06,241 | INFO     | -- intersect: 13383488709.080708
[2024-06-27 19:39:27] 2024-06-27 17:39:06,241 | INFO     | intersect: 13383488709.080708
[2024-06-27 19:39:27] 2024-06-27 17:39:06,242 | INFO     | chi2: 0.004118974670703865
[2024-06-27 19:39:27] 2024-06-27 17:39:06,242 | INFO     | current chi2=0.004118974670703865 (change=26.757497641978283 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,242 | INFO     | model: linear, x: [1719503485.0, 1719503546.0, 1719503607.0, 1719503668.0, 1719503729.0, 1719503790.0, 1719503851.0, 1719503912.0, 1719503973.0, 1719504034.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,242 | INFO     | sum of square deviations: 369281342.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,243 | INFO     | sum of deviations: -3398515722.5000005
[2024-06-27 19:39:27] 2024-06-27 17:39:06,243 | INFO     | mean x: 1719506687.5
[2024-06-27 19:39:27] 2024-06-27 17:39:06,243 | INFO     | mean y: 2462251.9716981133
[2024-06-27 19:39:27] 2024-06-27 17:39:06,243 | INFO     | -- intersect: 15827173223.966297
[2024-06-27 19:39:27] 2024-06-27 17:39:06,243 | INFO     | intersect: 15827173223.966297
[2024-06-27 19:39:27] 2024-06-27 17:39:06,244 | INFO     | chi2: 0.0031524741561121316
[2024-06-27 19:39:27] 2024-06-27 17:39:06,244 | INFO     | current chi2=0.0031524741561121316 (change=23.464589900635982 %)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,244 | INFO     | left removable region: 50
[2024-06-27 19:39:27] 2024-06-27 17:39:06,244 | INFO     | model: linear, x: [1719505010.0, 1719505071.0, 1719505132.0, 1719505193.0, 1719505254.0, 1719505315.0, 1719505376.0, 1719505437.0, 1719505498.0, 1719505559.0, 1719
[2024-06-27 19:39:27] 2024-06-27 17:39:06,244 | INFO     | sum of square deviations: 130793150.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | sum of deviations: -2036046166.0000002
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | mean x: 1719507267.0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | mean y: 2459886.546666667
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | -- intersect: 26769887526.178318
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | intersect: 26769887526.178318
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | chi2: 0.0015079660404488388
[2024-06-27 19:39:27] 2024-06-27 17:39:06,245 | INFO     | -- intersect: 26769887526.178318
[2024-06-27 19:39:27] 2024-06-27 17:39:06,246 | INFO     | current memory leak: -15.57 B/s (using 75 data points, chi2=0.00)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,246 | INFO     | ..............................
[2024-06-27 19:39:27] 2024-06-27 17:39:06,246 | INFO     | . Timing measurements:
[2024-06-27 19:39:27] 2024-06-27 17:39:06,246 | INFO     | . get job = 0 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,246 | INFO     | . initial setup = 1 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | . payload setup = 6 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | . stage-in = 0 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | . payload execution = 7956 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | . stage-out = 0 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | . log creation = 0 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,247 | INFO     | ..............................
[2024-06-27 19:39:27] 2024-06-27 17:39:06,648 | INFO     | 
[2024-06-27 19:39:27] 2024-06-27 17:39:06,648 | INFO     | job summary report
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | --------------------------------------------------
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | PanDA job id: 6246089014
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | task id: 40102679
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | errors: (none)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | pilot state: finished 
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | transexitcode: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | exeerrorcode: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,649 | INFO     | exeerrordiag: 
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | exitcode: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | exitmsg: OK
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | cpuconsumptiontime: 29054 s
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | nevents: 400
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | neventsw: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | pid: 1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | pgrp: 1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | corecount: 4
[2024-06-27 19:39:27] 2024-06-27 17:39:06,650 | INFO     | event service: False
[2024-06-27 19:39:27] 2024-06-27 17:39:06,651 | INFO     | sizes: {0: 2386836, 1: 2387035, 5: 2387241, 11: 2387297, 7966: 2415006, 7967: 2415005, 7968: 2424171, 7971: 2424227, 7996: 2424397}
[2024-06-27 19:39:27] 2024-06-27 17:39:06,651 | INFO     | --------------------------------------------------
[2024-06-27 19:39:27] 2024-06-27 17:39:06,651 | INFO     | 
[2024-06-27 19:39:27] 2024-06-27 17:39:06,651 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2024-06-27 19:39:27] 2024-06-27 17:39:06,673 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,673 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,675 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,676 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 19:39:27] 2024-06-27 17:39:06,676 | INFO     | job 6246089014 has completed (purged errors)
[2024-06-27 19:39:27] 2024-06-27 17:39:06,676 | INFO     | overall cleanup function is called
[2024-06-27 19:39:27] 2024-06-27 17:39:07,684 | INFO     | --- collectZombieJob: --- 10, [1028215]
[2024-06-27 19:39:27] 2024-06-27 17:39:07,684 | INFO     | zombie collector waiting for pid 1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:07,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 19:39:27] 2024-06-27 17:39:08,690 | INFO     | collected zombie processes
[2024-06-27 19:39:27] 2024-06-27 17:39:08,690 | INFO     | will now attempt to kill all subprocesses of pid=1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:08,794 | INFO     | process IDs to be killed: [1028215] (in reverse order)
[2024-06-27 19:39:27] 2024-06-27 17:39:08,858 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 19:39:27] 2024-06-27 17:39:08,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 19:39:27] 2024-06-27 17:39:08,863 | INFO     | did not find any defunct processes belonging to 1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:08,868 | INFO     | did not find any defunct processes belonging to 1028215
[2024-06-27 19:39:27] 2024-06-27 17:39:08,869 | INFO     | ready for new job
[2024-06-27 19:39:27] 2024-06-27 17:39:08,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 19:39:27] 2024-06-27 17:39:08,871 | INFO     | *************************************
[2024-06-27 19:39:27] 2024-06-27 17:39:08,871 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 19:39:27] 2024-06-27 17:39:08,871 | INFO     | *************************************
[2024-06-27 19:39:27] 2024-06-27 17:39:08,871 | INFO     | 
[2024-06-27 19:39:27] 2024-06-27 17:39:08,874 | INFO     | architecture information:
[2024-06-27 19:39:27] 2024-06-27 17:39:08,874 | INFO     | executing command: cat /etc/os-release
[2024-06-27 19:39:27] 2024-06-27 17:39:08,888 | INFO     | cat /etc/os-release:
[2024-06-27 19:39:27] NAME="CentOS Linux"
[2024-06-27 19:39:27] VERSION="7 (Core)"
[2024-06-27 19:39:27] ID="centos"
[2024-06-27 19:39:27] ID_LIKE="rhel fedora"
[2024-06-27 19:39:27] VERSION_ID="7"
[2024-06-27 19:39:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 19:39:27] ANSI_COLOR="0;31"
[2024-06-27 19:39:27] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 19:39:27] HOME_URL="https://www.centos.org/"
[2024-06-27 19:39:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 19:39:27] 
[2024-06-27 19:39:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 19:39:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 19:39:27] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 19:39:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 19:39:27] 
[2024-06-27 19:39:27] 2024-06-27 17:39:08,889 | INFO     | *************************************
[2024-06-27 19:39:27] 2024-06-27 17:39:09,392 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2024-06-27 19:39:27] 2024-06-27 17:39:09,412 | INFO     | sufficient remaining disk space (1671365132288 B)
[2024-06-27 19:39:27] 2024-06-27 17:39:09,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 19:39:27] 2024-06-27 17:39:09,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 19:39:27] 2024-06-27 17:39:09,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 19:39:27] 2024-06-27 17:39:09,426 | INFO     | all payload control threads have been joined
[2024-06-27 19:39:27] 2024-06-27 17:39:09,738 | INFO     | all job control threads have been joined
[2024-06-27 19:39:27] 2024-06-27 17:39:09,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 19:39:27] 2024-06-27 17:39:09,912 | INFO     | aborting loop
[2024-06-27 19:39:27] 2024-06-27 17:39:10,107 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 19:39:27] 2024-06-27 17:39:10,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 19:39:27] 2024-06-27 17:39:10,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 19:39:27] 2024-06-27 17:39:10,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 19:39:27] 2024-06-27 17:39:10,418 | INFO     | [job] retrieve thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,431 | INFO     | [payload] control thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,504 | INFO     | [job] validate thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,514 | INFO     | all data control threads have been joined
[2024-06-27 19:39:27] 2024-06-27 17:39:10,710 | INFO     | [payload] failed_post thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,725 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,743 | INFO     | [job] control thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,781 | INFO     | [data] copytool_in thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,783 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:10,917 | INFO     | [job] job monitor thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:11,272 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:11,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 19:39:27] 2024-06-27 17:39:11,418 | INFO     | [data] copytool_out thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:11,520 | INFO     | [data] control thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:11,963 | INFO     | [payload] validate_post thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:12,343 | INFO     | [job] queue monitor thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:14,351 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:19,958 | INFO     | job.realtimelogging is not enabled
[2024-06-27 19:39:27] 2024-06-27 17:39:20,964 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 19:39:27] 2024-06-27 17:39:21,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47219769914432)>', '<ExcThread(monitor, started 47220353148672)>']
[2024-06-27 19:39:27] 2024-06-27 17:39:22,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 19:39:27] 2024-06-27 17:39:22,169 | INFO     | [monitor] control thread has ended
[2024-06-27 19:39:27] 2024-06-27 17:39:26,598 | INFO     | all workflow threads have been joined
[2024-06-27 19:39:27] 2024-06-27 17:39:26,599 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 19:39:27] 2024-06-27 17:39:26,599 | INFO     | traces error code: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:26,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 19:39:27] 2024-06-27 17:39:26,691 [wrapper] ==== pilot stdout END ====
[2024-06-27 19:39:27] 2024-06-27 17:39:26,695 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 19:39:27] 2024-06-27 17:39:26,698 [wrapper] pilotpid: 1021356
[2024-06-27 19:39:27] 2024-06-27 17:39:26,701 [wrapper] Pilot exit status: 0
[2024-06-27 19:39:27] 2024-06-27 17:39:26,712 [wrapper] pandaids: 6246089014 6246089014
[2024-06-27 19:39:27] 2024-06-27 17:39:26,761 [wrapper] cleanup supervisor_pilot 1147907 1021357
[2024-06-27 19:39:27] 2024-06-27 17:39:26,764 [wrapper] Test setup, not cleaning
[2024-06-27 19:39:27] 2024-06-27 17:39:26,767 [wrapper] ==== wrapper stdout END ====
[2024-06-27 19:39:27] 2024-06-27 17:39:26,770 [wrapper] ==== wrapper stderr END ====
[2024-06-27 19:39:27] 2024-06-27 17:39:26,777 [wrapper] apfmon messages muted
[2024-06-27 19:39:27]  *** Error codes and diagnostics ***
[2024-06-27 19:39:27]     "exeErrorCode": 0,
[2024-06-27 19:39:27]     "exeErrorDiag": "",
[2024-06-27 19:39:27]     "pilotErrorCode": 0,
[2024-06-27 19:39:27]     "pilotErrorDiag": "",
[2024-06-27 19:39:27]  *** Listing of results directory ***
[2024-06-27 19:39:27] total 949816
[2024-06-27 19:39:27] drwx------ 4 boinc boinc      4096 Jun 12 12:00 pilot3
[2024-06-27 19:39:27] -rwx------ 1 boinc boinc     32220 Jun 27 14:40 runpilot2-wrapper.sh
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc    469766 Jun 27 14:41 pilot3.tar.gz
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc      5654 Jun 27 14:41 queuedata.json
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc       100 Jun 27 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 19:39:27] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 17:03 run_atlas
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc       105 Jun 27 17:03 job.xml
[2024-06-27 19:39:27] -rw-r--r-- 3 boinc boinc 397792840 Jun 27 17:03 EVNT.34667576._000002.pool.root.1
[2024-06-27 19:39:27] -rw-r--r-- 3 boinc boinc 397792840 Jun 27 17:03 ATLAS.root_0
[2024-06-27 19:39:27] -rw-r--r-- 2 boinc boinc     17537 Jun 27 17:03 start_atlas.sh
[2024-06-27 19:39:27] drwxrwx--x 2 boinc boinc      4096 Jun 27 17:03 shared
[2024-06-27 19:39:27] -rw-r--r-- 2 boinc boinc    482498 Jun 27 17:03 input.tar.gz
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc         0 Jun 27 17:03 boinc_lockfile
[2024-06-27 19:39:27] -rw------- 1 boinc boinc         0 Jun 27 17:03 agis_ddmendpoints.agis.ALL.json
[2024-06-27 19:39:27] -rw------- 1 boinc boinc   1321363 Jun 27 17:03 cric_ddmendpoints.json
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc      2584 Jun 27 17:25 pandaJob.out
[2024-06-27 19:39:27] -rw------- 1 boinc boinc       424 Jun 27 17:25 setup.sh.local
[2024-06-27 19:39:27] -rw------- 1 boinc boinc   1034827 Jun 27 17:25 agis_schedconf.cvmfs.json
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc      6463 Jun 27 18:05 init_data.xml
[2024-06-27 19:39:27] -rw------- 1 boinc boinc 171319855 Jun 27 19:38 HITS.40102679._000033.pool.root.1
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc       531 Jun 27 19:38 boinc_task_state.xml
[2024-06-27 19:39:27] -rw------- 1 boinc boinc      1036 Jun 27 19:38 memory_monitor_summary.json
[2024-06-27 19:39:27] -rw------- 1 boinc boinc    268484 Jun 27 19:38 log.40102679._000033.job.log.tgz.1
[2024-06-27 19:39:27] -rw------- 1 boinc boinc        97 Jun 27 19:38 pilot_heartbeat.json
[2024-06-27 19:39:27] -rw------- 1 boinc boinc      7743 Jun 27 19:39 heartbeat.json
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc      8192 Jun 27 19:39 boinc_mmap_file
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc        27 Jun 27 19:39 wrapper_checkpoint.txt
[2024-06-27 19:39:27] -rw------- 1 boinc boinc      4294 Jun 27 19:39 pilotlog.txt
[2024-06-27 19:39:27] -rw------- 1 boinc boinc    805897 Jun 27 19:39 log.40102679._000033.job.log.1
[2024-06-27 19:39:27] -rw------- 1 boinc boinc       357 Jun 27 19:39 output.list
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc       620 Jun 27 19:39 runtime_log
[2024-06-27 19:39:27] -rw------- 1 boinc boinc   1095680 Jun 27 19:39 result.tar.gz
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc     11486 Jun 27 19:39 runtime_log.err
[2024-06-27 19:39:27] -rw------- 1 boinc boinc       765 Jun 27 19:39 6JEODmUb3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmeroKDmtStF6n.diag
[2024-06-27 19:39:27] -rw-r--r-- 1 boinc boinc     23257 Jun 27 19:39 stderr.txt
[2024-06-27 19:39:27] HITS file was successfully produced:
[2024-06-27 19:39:27] -rw------- 1 boinc boinc 171319855 Jun 27 19:38 shared/HITS.pool.root.1
[2024-06-27 19:39:27]  *** Contents of shared directory: ***
[2024-06-27 19:39:27] total 557352
[2024-06-27 19:39:27] -rw-r--r-- 3 boinc boinc 397792840 Jun 27 17:03 ATLAS.root_0
[2024-06-27 19:39:27] -rw-r--r-- 2 boinc boinc     17537 Jun 27 17:03 start_atlas.sh
[2024-06-27 19:39:27] -rw-r--r-- 2 boinc boinc    482498 Jun 27 17:03 input.tar.gz
[2024-06-27 19:39:27] -rw------- 1 boinc boinc 171319855 Jun 27 19:38 HITS.pool.root.1
[2024-06-27 19:39:27] -rw------- 1 boinc boinc   1095680 Jun 27 19:39 result.tar.gz
19:39:29 (1017175): run_atlas exited; CPU time 28956.983302
19:39:29 (1017175): called boinc_finish(0)

</stderr_txt>
]]>

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