Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:16:44 (244854): wrapper (7.7.26015): starting
13:16:44 (244854): wrapper: running run_atlas (--nthreads 12)
[2024-06-27 13:16:44] Arguments: --nthreads 12
[2024-06-27 13:16:44] Threads: 12
[2024-06-27 13:16:44] Checking for CVMFS
[2024-06-27 13:16:45] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 13:16:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 13:16:45] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 13:16:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 13:16:45] 2.10.1.0 202352 242984 136768 134357 2 59 29630608 45568001 6881 130560 0 1510862045 99.764 919534917 17378 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-06-27 13:16:45] CVMFS is ok
[2024-06-27 13:16:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 13:16:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 13:16:45] Further information can be found at the LHC@home message board.
[2024-06-27 13:16:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 13:16:45] Checking for apptainer binary...
[2024-06-27 13:16:45] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 13:16:45] Running /usr/bin/apptainer --version
[2024-06-27 13:16:45] apptainer version 1.3.2-1.el7
[2024-06-27 13:16:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 13:16:46] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0067.triumf.lcg
[2024-06-27 13:16:46] apptainer works
[2024-06-27 13:16:46] Set ATHENA_PROC_NUMBER=12
[2024-06-27 13:16:46] Set ATHENA_CORE_NUMBER=12
[2024-06-27 13:16:46] Starting ATLAS job with PandaID=6246090646
[2024-06-27 13:16:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 14:16:25]  *** The last 200 lines of the pilot log: ***
[2024-06-27 14:16:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-27 14:16:25]  is_tar=False
[2024-06-27 14:16:25]  lfn=log.40102763._000045.job.log.tgz.1
[2024-06-27 14:16:25]  mtime=0
[2024-06-27 14:16:25]  protocol_id=None
[2024-06-27 14:16:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-27 14:16:25]  replicas=None
[2024-06-27 14:16:25]  scope=mc23_13p6TeV
[2024-06-27 14:16:25]  status=None
[2024-06-27 14:16:25]  status_code=0
[2024-06-27 14:16:25]  storage_token=
[2024-06-27 14:16:25]  surl=/home/boinc/slots/0/PanDA_Pilot-6246090646/log.40102763._000045.job.log.tgz.1
[2024-06-27 14:16:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/72/log.40102763._000045.job.log.tgz.1
[2024-06-27 14:16:25]  workdir=None
[2024-06-27 14:16:25] ]
[2024-06-27 14:16:25] 2024-06-27 21:15:55,555 | INFO     | transferring file log.40102763._000045.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6246090646/log.40102763._000045.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-06-27 14:16:25] 2024-06-27 21:15:55,555 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6246090646/log.40102763._000045.job.log.tgz.1 /home/boinc/slots/0/log.40102763._000045.job.log.t
[2024-06-27 14:16:25] 2024-06-27 21:15:55,572 | INFO     | adding to output.list: log.40102763._000045.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/72/log.40102763._000045.job.log.tg
[2024-06-27 14:16:25] 2024-06-27 21:15:55,573 | INFO     | summary of transferred files:
[2024-06-27 14:16:25] 2024-06-27 21:15:55,573 | INFO     |  -- lfn=log.40102763._000045.job.log.tgz.1, status_code=0, status=transferred
[2024-06-27 14:16:25] 2024-06-27 21:15:55,573 | INFO     | stage-out finished correctly
[2024-06-27 14:16:25] 2024-06-27 21:15:56,581 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-27 14:16:25] 2024-06-27 21:15:56,634 | INFO     | monitor loop #279: job 0:6246090646 is in state 'finished'
[2024-06-27 14:16:25] 2024-06-27 21:15:56,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:16:25] 2024-06-27 21:15:57,509 | INFO     | job 6246090646 has state=finished
[2024-06-27 14:16:25] 2024-06-27 21:15:57,509 | INFO     | preparing for final server update for job 6246090646 in state='finished'
[2024-06-27 14:16:25] 2024-06-27 21:15:57,510 | INFO     | this job has now completed (state=finished)
[2024-06-27 14:16:25] 2024-06-27 21:15:57,510 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 14:16:25] 2024-06-27 21:15:57,510 | INFO     | job 6246090646 has finished - writing final server update
[2024-06-27 14:16:25] 2024-06-27 21:15:57,510 | INFO     | total number of processed events: 400 (read)
[2024-06-27 14:16:25] 2024-06-27 21:15:57,513 | INFO     | executing command: lscpu
[2024-06-27 14:16:25] 2024-06-27 21:15:57,548 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 14:16:25] 2024-06-27 21:15:57,548 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 14:16:25] 2024-06-27 21:15:57,584 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 14:16:25] 2024-06-27 21:15:59,137 | INFO     | monitor loop #280: job 0:6246090646 is in state 'finished'
[2024-06-27 14:16:25] 2024-06-27 21:15:59,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:16:25] 2024-06-27 21:16:01,640 | INFO     | monitor loop #281: job 0:6246090646 is in state 'finished'
[2024-06-27 14:16:25] 2024-06-27 21:16:01,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,141 | INFO     | monitor loop #282: job 0:6246090646 is in state 'finished'
[2024-06-27 14:16:25] 2024-06-27 21:16:04,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,602 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-27 14:16:25] 2024-06-27 21:16:04,604 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6246090646/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,605 | INFO     | extracted standard info from prmon json
[2024-06-27 14:16:25] 2024-06-27 21:16:04,605 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 14:16:25] 2024-06-27 21:16:04,605 | WARNING  | GPU info not found in prmon json
[2024-06-27 14:16:25] 2024-06-27 21:16:04,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 14:16:25] 2024-06-27 21:16:04,606 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | fitting pss+swap vs Time
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | model: linear, x: [1719519756.0, 1719519817.0, 1719519878.0, 1719519939.0, 1719520000.0, 1719520061.0, 1719520122.0, 1719520183.0, 1719520244.0, 1719520305.0, 1719
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | sum of square deviations: 41114490.823529385
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | sum of deviations: 16852348883.882355
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | mean x: 1719521281.0588236
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | mean y: 2417610.705882353
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | -- intersect: -704809242736.5466
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | intersect: -704809242736.5466
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | chi2: 2.226820846383818
[2024-06-27 14:16:25] 2024-06-27 21:16:04,608 | INFO     | -- intersect: -704809242736.5466
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | current memory leak: 409.89 B/s (using 51 data points, chi2=2.23)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | ..............................
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . Timing measurements:
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . get job = 0 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . initial setup = 2 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . payload setup = 8 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . stage-in = 0 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . payload execution = 3509 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . stage-out = 0 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | . log creation = 0 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,609 | INFO     | ..............................
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | 
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | job summary report
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | --------------------------------------------------
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | PanDA job id: 6246090646
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | task id: 40102763
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | errors: (none)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | pilot state: finished 
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | transexitcode: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | exeerrorcode: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | exeerrordiag: 
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | exitcode: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | exitmsg: OK
[2024-06-27 14:16:25] 2024-06-27 21:16:04,672 | INFO     | cpuconsumptiontime: 24845 s
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | nevents: 400
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | neventsw: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | pid: 254877
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | pgrp: 254877
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | corecount: 12
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | event service: False
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | sizes: {0: 2386905, 1: 2387047, 6: 2387253, 11: 2387281, 3521: 2412801, 3522: 2421755, 3523: 2421939, 3531: 2422109}
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | --------------------------------------------------
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | 
[2024-06-27 14:16:25] 2024-06-27 21:16:04,673 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-27 14:16:25] 2024-06-27 21:16:04,692 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,692 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,692 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,693 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 14:16:25] 2024-06-27 21:16:04,694 | INFO     | job 6246090646 has completed (purged errors)
[2024-06-27 14:16:25] 2024-06-27 21:16:04,694 | INFO     | overall cleanup function is called
[2024-06-27 14:16:25] 2024-06-27 21:16:05,701 | INFO     | --- collectZombieJob: --- 10, [254877]
[2024-06-27 14:16:25] 2024-06-27 21:16:05,702 | INFO     | zombie collector waiting for pid 254877
[2024-06-27 14:16:25] 2024-06-27 21:16:05,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 14:16:25] 2024-06-27 21:16:06,707 | INFO     | collected zombie processes
[2024-06-27 14:16:25] 2024-06-27 21:16:06,707 | INFO     | will now attempt to kill all subprocesses of pid=254877
[2024-06-27 14:16:25] 2024-06-27 21:16:06,781 | INFO     | process IDs to be killed: [254877] (in reverse order)
[2024-06-27 14:16:25] 2024-06-27 21:16:06,840 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 14:16:25] 2024-06-27 21:16:06,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 14:16:25] 2024-06-27 21:16:06,845 | INFO     | did not find any defunct processes belonging to 254877
[2024-06-27 14:16:25] 2024-06-27 21:16:06,848 | INFO     | did not find any defunct processes belonging to 254877
[2024-06-27 14:16:25] 2024-06-27 21:16:06,848 | INFO     | ready for new job
[2024-06-27 14:16:25] 2024-06-27 21:16:06,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 14:16:25] 2024-06-27 21:16:06,850 | INFO     | *************************************
[2024-06-27 14:16:25] 2024-06-27 21:16:06,850 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 14:16:25] 2024-06-27 21:16:06,850 | INFO     | *************************************
[2024-06-27 14:16:25] 2024-06-27 21:16:06,850 | INFO     | 
[2024-06-27 14:16:25] 2024-06-27 21:16:06,853 | INFO     | architecture information:
[2024-06-27 14:16:25] 2024-06-27 21:16:06,853 | INFO     | executing command: cat /etc/os-release
[2024-06-27 14:16:25] 2024-06-27 21:16:06,865 | INFO     | cat /etc/os-release:
[2024-06-27 14:16:25] NAME="CentOS Linux"
[2024-06-27 14:16:25] VERSION="7 (Core)"
[2024-06-27 14:16:25] ID="centos"
[2024-06-27 14:16:25] ID_LIKE="rhel fedora"
[2024-06-27 14:16:25] VERSION_ID="7"
[2024-06-27 14:16:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 14:16:25] ANSI_COLOR="0;31"
[2024-06-27 14:16:25] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 14:16:25] HOME_URL="https://www.centos.org/"
[2024-06-27 14:16:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 14:16:25] 
[2024-06-27 14:16:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 14:16:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 14:16:25] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 14:16:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 14:16:25] 
[2024-06-27 14:16:25] 2024-06-27 21:16:06,865 | INFO     | *************************************
[2024-06-27 14:16:25] 2024-06-27 21:16:07,368 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-27 14:16:25] 2024-06-27 21:16:07,385 | INFO     | sufficient remaining disk space (2106927874048 B)
[2024-06-27 14:16:25] 2024-06-27 21:16:07,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 14:16:25] 2024-06-27 21:16:07,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 14:16:25] 2024-06-27 21:16:07,386 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-27 14:16:25] 2024-06-27 21:16:07,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 14:16:25] 2024-06-27 21:16:07,387 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 14:16:25] 2024-06-27 21:16:07,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 14:16:25] 2024-06-27 21:16:07,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 14:16:25] 2024-06-27 21:16:07,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:16:25] 2024-06-27 21:16:07,650 | INFO     | aborting loop
[2024-06-27 14:16:25] 2024-06-27 21:16:07,654 | INFO     | all data control threads have been joined
[2024-06-27 14:16:25] 2024-06-27 21:16:08,237 | INFO     | all payload control threads have been joined
[2024-06-27 14:16:25] 2024-06-27 21:16:08,388 | INFO     | [job] retrieve thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,629 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 14:16:25] 2024-06-27 21:16:08,654 | INFO     | [data] control thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,655 | INFO     | [job] job monitor thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,770 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,798 | INFO     | [payload] validate_post thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:08,851 | INFO     | [data] copytool_in thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:09,045 | INFO     | all job control threads have been joined
[2024-06-27 14:16:25] 2024-06-27 21:16:09,061 | INFO     | [job] validate thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:09,242 | INFO     | [payload] control thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:09,448 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:09,533 | INFO     | [payload] failed_post thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:09,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 14:16:25] 2024-06-27 21:16:10,050 | INFO     | [job] control thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:10,650 | INFO     | [data] copytool_out thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:10,687 | INFO     | [job] queue monitor thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:11,392 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:17,836 | INFO     | job.realtimelogging is not enabled
[2024-06-27 14:16:25] 2024-06-27 21:16:18,837 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 14:16:25] 2024-06-27 21:16:19,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800135186240)>', '<ExcThread(monitor, started 139799574869760)>']
[2024-06-27 14:16:25] 2024-06-27 21:16:19,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 14:16:25] 2024-06-27 21:16:19,448 | INFO     | [monitor] control thread has ended
[2024-06-27 14:16:25] 2024-06-27 21:16:24,106 | INFO     | all workflow threads have been joined
[2024-06-27 14:16:25] 2024-06-27 21:16:24,106 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 14:16:25] 2024-06-27 21:16:24,106 | INFO     | traces error code: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:24,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 14:16:25] 2024-06-27 21:16:24,218 [wrapper] ==== pilot stdout END ====
[2024-06-27 14:16:25] 2024-06-27 21:16:24,220 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 14:16:25] 2024-06-27 21:16:24,222 [wrapper] pilotpid: 248486
[2024-06-27 14:16:25] 2024-06-27 21:16:24,225 [wrapper] Pilot exit status: 0
[2024-06-27 14:16:25] 2024-06-27 21:16:24,233 [wrapper] pandaids: 6246090646
[2024-06-27 14:16:25] 2024-06-27 21:16:24,272 [wrapper] cleanup supervisor_pilot  44841 248487
[2024-06-27 14:16:25] 2024-06-27 21:16:24,274 [wrapper] Test setup, not cleaning
[2024-06-27 14:16:25] 2024-06-27 21:16:24,277 [wrapper] ==== wrapper stdout END ====
[2024-06-27 14:16:25] 2024-06-27 21:16:24,279 [wrapper] ==== wrapper stderr END ====
[2024-06-27 14:16:25] 2024-06-27 21:16:24,283 [wrapper] apfmon messages muted
[2024-06-27 14:16:25]  *** Error codes and diagnostics ***
[2024-06-27 14:16:25]     "exeErrorCode": 0,
[2024-06-27 14:16:25]     "exeErrorDiag": "",
[2024-06-27 14:16:25]     "pilotErrorCode": 0,
[2024-06-27 14:16:25]     "pilotErrorDiag": "",
[2024-06-27 14:16:25]  *** Listing of results directory ***
[2024-06-27 14:16:25] total 552588
[2024-06-27 14:16:25] -rwx------ 1 boinc boinc     32220 Jun 27 05:41 runpilot2-wrapper.sh
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc    469766 Jun 27 05:41 pilot3.tar.gz
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc      5654 Jun 27 05:41 queuedata.json
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc       100 Jun 27 13:16 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 14:16:25] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 13:16 run_atlas
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc       105 Jun 27 13:16 job.xml
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc 392579279 Jun 27 13:16 EVNT.34668127._000004.pool.root.1
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc      6628 Jun 27 13:16 init_data.xml
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:16 start_atlas.sh
[2024-06-27 14:16:25] drwxrwx--x 2 boinc boinc      4096 Jun 27 13:16 shared
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc    482507 Jun 27 13:16 input.tar.gz
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc         0 Jun 27 13:16 boinc_lockfile
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc      2595 Jun 27 13:16 pandaJob.out
[2024-06-27 14:16:25] -rw------- 1 boinc boinc       424 Jun 27 13:16 setup.sh.local
[2024-06-27 14:16:25] -rw------- 1 boinc boinc   1036876 Jun 27 13:16 agis_schedconf.cvmfs.json
[2024-06-27 14:16:25] -rw------- 1 boinc boinc         0 Jun 27 13:16 agis_ddmendpoints.agis.ALL.json
[2024-06-27 14:16:25] -rw------- 1 boinc boinc   1321378 Jun 27 13:16 cric_ddmendpoints.json
[2024-06-27 14:16:25] drwx------ 4 boinc boinc      4096 Jun 27 13:16 pilot3
[2024-06-27 14:16:25] -rw------- 1 boinc boinc        95 Jun 27 14:15 pilot_heartbeat.json
[2024-06-27 14:16:25] -rw------- 1 boinc boinc 168321152 Jun 27 14:15 HITS.40102763._000045.pool.root.1
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc       529 Jun 27 14:15 boinc_task_state.xml
[2024-06-27 14:16:25] -rw------- 1 boinc boinc      1047 Jun 27 14:15 memory_monitor_summary.json
[2024-06-27 14:16:25] -rw------- 1 boinc boinc    358660 Jun 27 14:15 log.40102763._000045.job.log.tgz.1
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc        27 Jun 27 14:16 wrapper_checkpoint.txt
[2024-06-27 14:16:25] -rw------- 1 boinc boinc      7753 Jun 27 14:16 heartbeat.json
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc      8192 Jun 27 14:16 boinc_mmap_file
[2024-06-27 14:16:25] -rw------- 1 boinc boinc      4405 Jun 27 14:16 pilotlog.txt
[2024-06-27 14:16:25] -rw------- 1 boinc boinc    343235 Jun 27 14:16 log.40102763._000045.job.log.1
[2024-06-27 14:16:25] -rw------- 1 boinc boinc       357 Jun 27 14:16 output.list
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc       620 Jun 27 14:16 runtime_log
[2024-06-27 14:16:25] -rw------- 1 boinc boinc    716800 Jun 27 14:16 result.tar.gz
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc     11286 Jun 27 14:16 runtime_log.err
[2024-06-27 14:16:25] -rw------- 1 boinc boinc       653 Jun 27 14:16 LpcKDm5b3g5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmlHZKDmlveULn.diag
[2024-06-27 14:16:25] -rw-r--r-- 1 boinc boinc     21887 Jun 27 14:16 stderr.txt
[2024-06-27 14:16:25] HITS file was successfully produced:
[2024-06-27 14:16:25] -rw------- 1 boinc boinc 168321152 Jun 27 14:15 shared/HITS.pool.root.1
[2024-06-27 14:16:25]  *** Contents of shared directory: ***
[2024-06-27 14:16:25] total 548960
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc 392579279 Jun 27 13:16 ATLAS.root_0
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:16 start_atlas.sh
[2024-06-27 14:16:25] -rw-r--r-- 2 boinc boinc    482507 Jun 27 13:16 input.tar.gz
[2024-06-27 14:16:25] -rw------- 1 boinc boinc 168321152 Jun 27 14:15 HITS.pool.root.1
[2024-06-27 14:16:25] -rw------- 1 boinc boinc    716800 Jun 27 14:16 result.tar.gz
14:16:26 (244854): run_atlas exited; CPU time 24785.346815
14:16:26 (244854): called boinc_finish(0)

</stderr_txt>
]]>

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