Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:48:00 (70278): wrapper (7.7.26015): starting
08:48:00 (70278): wrapper: running run_atlas (--nthreads 8)
[2024-06-27 08:48:00] Arguments: --nthreads 8
[2024-06-27 08:48:00] Threads: 8
[2024-06-27 08:48:00] Checking for CVMFS
[2024-06-27 08:48:00] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-27 08:48:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-27 08:48:00] Running cvmfs_config stat atlas.cern.ch
[2024-06-27 08:48:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-27 08:48:01] 2.11.2.0 5300 16834 145036 134351 1 350 12579953 18432001 19830 130560 0 434559 96.931 3165677 52514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-27 08:48:01] CVMFS is ok
[2024-06-27 08:48:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 08:48:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 08:48:01] Further information can be found at the LHC@home message board.
[2024-06-27 08:48:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 08:48:01] Checking for apptainer binary...
[2024-06-27 08:48:01] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-27 08:48:01] Running /usr/bin/apptainer --version
[2024-06-27 08:48:01] apptainer version 1.3.2-1.el7
[2024-06-27 08:48:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 08:48:04] c-212-10.aglt2.org
[2024-06-27 08:48:04] apptainer works
[2024-06-27 08:48:04] Set ATHENA_PROC_NUMBER=8
[2024-06-27 08:48:04] Set ATHENA_CORE_NUMBER=8
[2024-06-27 08:48:04] Starting ATLAS job with PandaID=6246089238
[2024-06-27 08:48:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 13:11:39]  *** The last 200 lines of the pilot log: ***
[2024-06-27 13:11:39] 2024-06-27 17:11:19,452 | INFO     | preparing for final server update for job 6246089238 in state='finished'
[2024-06-27 13:11:39] 2024-06-27 17:11:19,594 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-06-27 13:11:39] 2024-06-27 17:11:19,595 | INFO     | this job has now completed (state=finished)
[2024-06-27 13:11:39] 2024-06-27 17:11:19,595 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-27 13:11:39] 2024-06-27 17:11:19,595 | INFO     | job 6246089238 has finished - writing final server update
[2024-06-27 13:11:39] 2024-06-27 17:11:19,595 | INFO     | total number of processed events: 400 (read)
[2024-06-27 13:11:39] 2024-06-27 17:11:19,600 | INFO     | executing command: lscpu
[2024-06-27 13:11:39] 2024-06-27 17:11:19,635 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-27 13:11:39] 2024-06-27 17:11:19,635 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-27 13:11:39] 2024-06-27 17:11:19,693 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-27 13:11:39] 2024-06-27 17:11:19,731 | INFO     | monitor loop #1124: job 0:6246089238 is in state 'finished'
[2024-06-27 13:11:39] 2024-06-27 17:11:19,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,235 | INFO     | monitor loop #1125: job 0:6246089238 is in state 'finished'
[2024-06-27 13:11:39] 2024-06-27 17:11:22,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,813 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-27 13:11:39] 2024-06-27 17:11:22,814 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6246089238/memory_monitor_summary.json (trf name=prmon)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,815 | INFO     | extracted standard info from prmon json
[2024-06-27 13:11:39] 2024-06-27 17:11:22,815 | INFO     | extracted standard memory fields from prmon json
[2024-06-27 13:11:39] 2024-06-27 17:11:22,815 | WARNING  | GPU info not found in prmon json
[2024-06-27 13:11:39] 2024-06-27 17:11:22,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-27 13:11:39] 2024-06-27 17:11:22,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 13:11:39] 2024-06-27 17:11:22,818 | INFO     | fitting pss+swap vs Time
[2024-06-27 13:11:39] 2024-06-27 17:11:22,819 | INFO     | model: linear, x: [1719492576.0, 1719492637.0, 1719492698.0, 1719492759.0, 1719492820.0, 1719492881.0, 1719492942.0, 1719493003.0, 1719493064.0, 1719493125.0, 1719
[2024-06-27 13:11:39] 2024-06-27 17:11:22,819 | INFO     | sum of square deviations: 5325135524.186007
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | sum of deviations: 406569672394.27893
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | mean x: 1719500414.5348837
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | mean y: 2236344.1356589147
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | -- intersect: -131280191500.95427
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | intersect: -131280191500.95427
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | chi2: 15.833698980953168
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | model: linear, x: [1719492576.0, 1719492637.0, 1719492698.0, 1719492759.0, 1719492820.0, 1719492881.0, 1719492942.0, 1719493003.0, 1719493064.0, 1719493125.0, 1719
[2024-06-27 13:11:39] 2024-06-27 17:11:22,820 | INFO     | sum of square deviations: 5021495366.679861
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | sum of deviations: 414618809274.2648
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | mean x: 1719500262.035573
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | mean y: 2240247.4150197627
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | -- intersect: -141974820196.10764
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | intersect: -141974820196.10764
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | chi2: 14.88424449574138
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | current chi2=14.88424449574138 (change=5.996416165002983 %)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | right removable region: 252
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | model: linear, x: [1719492881.0, 1719492942.0, 1719493003.0, 1719493064.0, 1719493125.0, 1719493186.0, 1719493247.0, 1719493308.0, 1719493369.0, 1719493430.0, 1719
[2024-06-27 13:11:39] 2024-06-27 17:11:22,821 | INFO     | sum of square deviations: 5021489876.679861
[2024-06-27 13:11:39] 2024-06-27 17:11:22,822 | INFO     | sum of deviations: 334350798876.5811
[2024-06-27 13:11:39] 2024-06-27 17:11:22,822 | INFO     | mean x: 1719500567.035573
[2024-06-27 13:11:39] 2024-06-27 17:11:22,822 | INFO     | mean y: 2272563.2687747036
[2024-06-27 13:11:39] 2024-06-27 17:11:22,822 | INFO     | -- intersect: -114488924745.926
[2024-06-27 13:11:39] 2024-06-27 17:11:22,822 | INFO     | intersect: -114488924745.926
[2024-06-27 13:11:39] 2024-06-27 17:11:22,823 | INFO     | chi2: 12.223275452217063
[2024-06-27 13:11:39] 2024-06-27 17:11:22,823 | INFO     | current chi2=12.223275452217063 (change=22.802148336148058 %)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,823 | INFO     | left removable region: 10
[2024-06-27 13:11:39] 2024-06-27 17:11:22,823 | INFO     | model: linear, x: [1719493186.0, 1719493247.0, 1719493308.0, 1719493369.0, 1719493430.0, 1719493491.0, 1719493552.0, 1719493613.0, 1719493674.0, 1719493735.0, 1719
[2024-06-27 13:11:39] 2024-06-27 17:11:22,823 | INFO     | sum of square deviations: 4394570764.16528
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | sum of deviations: 287489402262.0164
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | mean x: 1719500536.5371902
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | mean y: 2306300.5537190083
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | -- intersect: -112486081750.73975
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | intersect: -112486081750.73975
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | chi2: 9.498267178631593
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | -- intersect: -112486081750.73975
[2024-06-27 13:11:39] 2024-06-27 17:11:22,824 | INFO     | current memory leak: 65.42 B/s (using 242 data points, chi2=9.50)
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | ..............................
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . Timing measurements:
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . get job = 0 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . initial setup = 2 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . payload setup = 22 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . stage-in = 0 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . payload execution = 15708 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . stage-out = 1 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | . log creation = 0 s
[2024-06-27 13:11:39] 2024-06-27 17:11:22,825 | INFO     | ..............................
[2024-06-27 13:11:39] 2024-06-27 17:11:23,312 | INFO     | 
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | job summary report
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | --------------------------------------------------
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | PanDA job id: 6246089238
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | task id: 40102696
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | errors: (none)
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | pilot state: finished 
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | transexitcode: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | exeerrorcode: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | exeerrordiag: 
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | exitcode: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:23,314 | INFO     | exitmsg: OK
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | cpuconsumptiontime: 43271 s
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | nevents: 400
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | neventsw: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | pid: 7592
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | pgrp: 7592
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | corecount: 8
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | event service: False
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | sizes: {0: 2386834, 1: 2387033, 10: 2387239, 11: 2387267, 15734: 2418091, 15737: 2427051, 15739: 2427235, 15745: 2427405}
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | --------------------------------------------------
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | 
[2024-06-27 13:11:39] 2024-06-27 17:11:23,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 13:11:39] 2024-06-27 17:11:23,337 | INFO     | job 6246089238 has completed (purged errors)
[2024-06-27 13:11:39] 2024-06-27 17:11:23,338 | INFO     | overall cleanup function is called
[2024-06-27 13:11:39] 2024-06-27 17:11:24,345 | INFO     | --- collectZombieJob: --- 10, [7592]
[2024-06-27 13:11:39] 2024-06-27 17:11:24,345 | INFO     | zombie collector waiting for pid 7592
[2024-06-27 13:11:39] 2024-06-27 17:11:24,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 13:11:39] 2024-06-27 17:11:25,351 | INFO     | collected zombie processes
[2024-06-27 13:11:39] 2024-06-27 17:11:25,351 | INFO     | will now attempt to kill all subprocesses of pid=7592
[2024-06-27 13:11:39] 2024-06-27 17:11:25,480 | INFO     | process IDs to be killed: [7592] (in reverse order)
[2024-06-27 13:11:39] 2024-06-27 17:11:25,569 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 13:11:39] 2024-06-27 17:11:25,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 13:11:39] 2024-06-27 17:11:25,579 | INFO     | did not find any defunct processes belonging to 7592
[2024-06-27 13:11:39] 2024-06-27 17:11:25,587 | INFO     | did not find any defunct processes belonging to 7592
[2024-06-27 13:11:39] 2024-06-27 17:11:25,588 | INFO     | ready for new job
[2024-06-27 13:11:39] 2024-06-27 17:11:25,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 13:11:39] 2024-06-27 17:11:25,590 | INFO     | *************************************
[2024-06-27 13:11:39] 2024-06-27 17:11:25,590 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 13:11:39] 2024-06-27 17:11:25,590 | INFO     | *************************************
[2024-06-27 13:11:39] 2024-06-27 17:11:25,591 | INFO     | 
[2024-06-27 13:11:39] 2024-06-27 17:11:25,595 | INFO     | architecture information:
[2024-06-27 13:11:39] 2024-06-27 17:11:25,595 | INFO     | executing command: cat /etc/os-release
[2024-06-27 13:11:39] 2024-06-27 17:11:25,612 | INFO     | cat /etc/os-release:
[2024-06-27 13:11:39] NAME="CentOS Linux"
[2024-06-27 13:11:39] VERSION="7 (Core)"
[2024-06-27 13:11:39] ID="centos"
[2024-06-27 13:11:39] ID_LIKE="rhel fedora"
[2024-06-27 13:11:39] VERSION_ID="7"
[2024-06-27 13:11:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 13:11:39] ANSI_COLOR="0;31"
[2024-06-27 13:11:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 13:11:39] HOME_URL="https://www.centos.org/"
[2024-06-27 13:11:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 13:11:39] 
[2024-06-27 13:11:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 13:11:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 13:11:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 13:11:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 13:11:39] 
[2024-06-27 13:11:39] 2024-06-27 17:11:25,613 | INFO     | *************************************
[2024-06-27 13:11:39] 2024-06-27 17:11:26,116 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2024-06-27 13:11:39] 2024-06-27 17:11:26,135 | INFO     | sufficient remaining disk space (103823704064 B)
[2024-06-27 13:11:39] 2024-06-27 17:11:26,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 13:11:39] 2024-06-27 17:11:26,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 13:11:39] 2024-06-27 17:11:26,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 13:11:39] 2024-06-27 17:11:26,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 13:11:39] 2024-06-27 17:11:26,137 | INFO     | aborting loop
[2024-06-27 13:11:39] 2024-06-27 17:11:26,724 | INFO     | all payload control threads have been joined
[2024-06-27 13:11:39] 2024-06-27 17:11:26,738 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 13:11:39] 2024-06-27 17:11:26,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 13:11:39] 2024-06-27 17:11:26,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 13:11:39] 2024-06-27 17:11:26,939 | INFO     | all job control threads have been joined
[2024-06-27 13:11:39] 2024-06-27 17:11:27,130 | INFO     | all data control threads have been joined
[2024-06-27 13:11:39] 2024-06-27 17:11:27,141 | INFO     | [job] retrieve thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,143 | INFO     | [job] job monitor thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,166 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,174 | INFO     | [job] validate thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,653 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,730 | INFO     | [payload] control thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:27,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 13:11:39] 2024-06-27 17:11:27,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 13:11:39] 2024-06-27 17:11:27,945 | INFO     | [job] control thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,077 | INFO     | [payload] failed_post thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,139 | INFO     | [data] control thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,142 | INFO     | [data] copytool_out thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,160 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,248 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,348 | INFO     | [data] copytool_in thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,729 | INFO     | [payload] validate_post thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:28,911 | INFO     | [job] queue monitor thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:31,754 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 13:11:39] 2024-06-27 17:11:33,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037020968768)>', '<ExcThread(monitor, started 140036427196160)>']
[2024-06-27 13:11:39] 2024-06-27 17:11:33,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 13:11:39] 2024-06-27 17:11:33,771 | INFO     | [monitor] control thread has ended
[2024-06-27 13:11:39] 2024-06-27 17:11:38,768 | INFO     | all workflow threads have been joined
[2024-06-27 13:11:39] 2024-06-27 17:11:38,768 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 13:11:39] 2024-06-27 17:11:38,769 | INFO     | traces error code: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:38,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 13:11:39] 2024-06-27 17:11:38,898 [wrapper] ==== pilot stdout END ====
[2024-06-27 13:11:39] 2024-06-27 17:11:38,900 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 13:11:39] 2024-06-27 17:11:38,902 [wrapper] pilotpid: 77210
[2024-06-27 13:11:39] 2024-06-27 17:11:38,904 [wrapper] Pilot exit status: 0
[2024-06-27 13:11:39] 2024-06-27 17:11:38,940 [wrapper] pandaids: 6246089238
[2024-06-27 13:11:39] 2024-06-27 17:11:38,990 [wrapper] cleanup supervisor_pilot  2057 77211
[2024-06-27 13:11:39] 2024-06-27 17:11:38,993 [wrapper] Test setup, not cleaning
[2024-06-27 13:11:39] 2024-06-27 17:11:38,995 [wrapper] ==== wrapper stdout END ====
[2024-06-27 13:11:39] 2024-06-27 17:11:38,996 [wrapper] ==== wrapper stderr END ====
[2024-06-27 13:11:39] 2024-06-27 17:11:39,000 [wrapper] apfmon messages muted
[2024-06-27 13:11:39]  *** Error codes and diagnostics ***
[2024-06-27 13:11:39]     "exeErrorCode": 0,
[2024-06-27 13:11:39]     "exeErrorDiag": "",
[2024-06-27 13:11:39]     "pilotErrorCode": 0,
[2024-06-27 13:11:39]     "pilotErrorDiag": "",
[2024-06-27 13:11:39]  *** Listing of results directory ***
[2024-06-27 13:11:39] total 582956
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas    469766 Jun 27 08:31 pilot3.tar.gz
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas      5654 Jun 27 08:39 queuedata.json
[2024-06-27 13:11:39] -rwx------ 1 boincer umatlas     32220 Jun 27 08:39 runpilot2-wrapper.sh
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas       100 Jun 27 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 13:11:39] -rwxr-xr-x 1 boincer umatlas      7986 Jun 27 08:47 run_atlas
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas       105 Jun 27 08:47 job.xml
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas 402172489 Jun 27 08:47 EVNT.34667660._000001.pool.root.1
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas     17537 Jun 27 08:47 start_atlas.sh
[2024-06-27 13:11:39] drwxrwx--x 2 boincer umatlas      4096 Jun 27 08:47 shared
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas    482501 Jun 27 08:47 input.tar.gz
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas         0 Jun 27 08:48 boinc_lockfile
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas      2594 Jun 27 08:48 pandaJob.out
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas       467 Jun 27 08:48 setup.sh.local
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas   1034827 Jun 27 08:48 agis_schedconf.cvmfs.json
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas   1321363 Jun 27 08:48 cric_ddmendpoints.json
[2024-06-27 13:11:39] drwx------ 4 boincer umatlas      4096 Jun 27 08:48 pilot3
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas      6389 Jun 27 13:04 init_data.xml
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas 187604661 Jun 27 13:10 HITS.40102696._000024.pool.root.1
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas        95 Jun 27 13:10 pilot_heartbeat.json
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas       530 Jun 27 13:10 boinc_task_state.xml
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas      1082 Jun 27 13:11 memory_monitor_summary.json
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas         0 Jun 27 13:11 agis_ddmendpoints.agis.ALL.json
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas    428458 Jun 27 13:11 log.40102696._000024.job.log.tgz.1
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas      7749 Jun 27 13:11 heartbeat.json
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas        28 Jun 27 13:11 wrapper_checkpoint.txt
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas      8192 Jun 27 13:11 boinc_mmap_file
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas      4212 Jun 27 13:11 pilotlog.txt
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas   1382931 Jun 27 13:11 log.40102696._000024.job.log.1
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas       357 Jun 27 13:11 output.list
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas       620 Jun 27 13:11 runtime_log
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas   1832960 Jun 27 13:11 result.tar.gz
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas       651 Jun 27 13:11 zM6MDmra3g5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmoqoKDmirI9ln.diag
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas     11405 Jun 27 13:11 runtime_log.err
[2024-06-27 13:11:39] -rw-r--r-- 1 boincer umatlas     21818 Jun 27 13:11 stderr.txt
[2024-06-27 13:11:39] HITS file was successfully produced:
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas 187604661 Jun 27 13:10 shared/HITS.pool.root.1
[2024-06-27 13:11:39]  *** Contents of shared directory: ***
[2024-06-27 13:11:39] total 578248
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas 402172489 Jun 27 08:47 ATLAS.root_0
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas     17537 Jun 27 08:47 start_atlas.sh
[2024-06-27 13:11:39] -rw-r--r-- 2 boincer umatlas    482501 Jun 27 08:47 input.tar.gz
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas 187604661 Jun 27 13:10 HITS.pool.root.1
[2024-06-27 13:11:39] -rw------- 1 boincer umatlas   1832960 Jun 27 13:11 result.tar.gz
13:11:40 (70278): run_atlas exited; CPU time 42181.230242
13:11:40 (70278): called boinc_finish(0)

</stderr_txt>
]]>

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