Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:58:46 (78895): wrapper (7.7.26015): starting
22:58:46 (78895): wrapper: running run_atlas (--nthreads 6)
[2024-06-26 22:58:46] Arguments: --nthreads 6
[2024-06-26 22:58:46] Threads: 6
[2024-06-26 22:58:46] Checking for CVMFS
[2024-06-26 22:58:46] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-26 22:58:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-26 22:58:46] Running cvmfs_config stat atlas.cern.ch
[2024-06-26 22:58:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-26 22:58:46] 2.11.2.0 4134928 194 64528 134330 2 56 5771200 6144001 0 130560 0 203654 99.992 5923 136 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.202:3128 1
[2024-06-26 22:58:46] CVMFS is ok
[2024-06-26 22:58:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-26 22:58:46] Checking for apptainer binary...
[2024-06-26 22:58:46] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-26 22:58:46] Running /usr/bin/apptainer --version
[2024-06-26 22:58:46] apptainer version 1.3.0
[2024-06-26 22:58:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-26 22:58:46] Ryzen8
[2024-06-26 22:58:46] apptainer works
[2024-06-26 22:58:46] Set ATHENA_PROC_NUMBER=6
[2024-06-26 22:58:46] Set ATHENA_CORE_NUMBER=6
[2024-06-26 22:58:46] Starting ATLAS job with PandaID=6245351203
[2024-06-26 22:58:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-26 23:57:04]  *** The last 200 lines of the pilot log: ***
[2024-06-26 23:57:04]  filetype=log
[2024-06-26 23:57:04]  guid=b6eacf91-3c28-4fa8-abbd-0d03ad15a6cd
[2024-06-26 23:57:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-26 23:57:04]  is_tar=False
[2024-06-26 23:57:04]  lfn=log.40092504._000031.job.log.tgz.1
[2024-06-26 23:57:04]  mtime=0
[2024-06-26 23:57:04]  protocol_id=None
[2024-06-26 23:57:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-26 23:57:04]  replicas=None
[2024-06-26 23:57:04]  scope=mc23_13p6TeV
[2024-06-26 23:57:04]  status=None
[2024-06-26 23:57:04]  status_code=0
[2024-06-26 23:57:04]  storage_token=
[2024-06-26 23:57:04]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6245351203/log.40092504._000031.job.log.tgz.1
[2024-06-26 23:57:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/47/log.40092504._000031.job.log.tgz.1
[2024-06-26 23:57:04]  workdir=None
[2024-06-26 23:57:04] ]
[2024-06-26 23:57:04] 2024-06-26 21:56:37,734 | INFO     | transferring file log.40092504._000031.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6245351203/log.40092504._000031.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-06-26 23:57:04] 2024-06-26 21:56:37,734 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6245351203/log.40092504._000031.job.log.tgz.1 /var/lib/boinc/slots/3/log.40092504._000031.job
[2024-06-26 23:57:04] 2024-06-26 21:56:37,744 | INFO     | adding to output.list: log.40092504._000031.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/47/log.40092504._000031.job.log.tg
[2024-06-26 23:57:04] 2024-06-26 21:56:37,745 | INFO     | summary of transferred files:
[2024-06-26 23:57:04] 2024-06-26 21:56:37,745 | INFO     |  -- lfn=log.40092504._000031.job.log.tgz.1, status_code=0, status=transferred
[2024-06-26 23:57:04] 2024-06-26 21:56:37,745 | INFO     | stage-out finished correctly
[2024-06-26 23:57:04] 2024-06-26 21:56:38,924 | INFO     | monitor loop #271: job 0:6245351203 is in state 'finished'
[2024-06-26 23:57:04] 2024-06-26 21:56:38,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-26 23:57:04] 2024-06-26 21:56:39,881 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-26 23:57:04] 2024-06-26 21:56:40,454 | INFO     | job 6245351203 has state=finished
[2024-06-26 23:57:04] 2024-06-26 21:56:40,454 | INFO     | preparing for final server update for job 6245351203 in state='finished'
[2024-06-26 23:57:04] 2024-06-26 21:56:40,455 | INFO     | this job has now completed (state=finished)
[2024-06-26 23:57:04] 2024-06-26 21:56:40,455 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-26 23:57:04] 2024-06-26 21:56:40,455 | INFO     | job 6245351203 has finished - writing final server update
[2024-06-26 23:57:04] 2024-06-26 21:56:40,455 | INFO     | total number of processed events: 400 (read)
[2024-06-26 23:57:04] 2024-06-26 21:56:40,456 | INFO     | executing command: lscpu
[2024-06-26 23:57:04] 2024-06-26 21:56:40,467 | INFO     | found 6 cores (6 cores per socket, 1 sockets)
[2024-06-26 23:57:04] 2024-06-26 21:56:40,468 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-26 23:57:04] 2024-06-26 21:56:40,485 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-26 23:57:04] 2024-06-26 21:56:41,427 | INFO     | monitor loop #272: job 0:6245351203 is in state 'finished'
[2024-06-26 23:57:04] 2024-06-26 21:56:41,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,178 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-26 23:57:04] 2024-06-26 21:56:43,178 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6245351203/memory_monitor_summary.json (trf name=prmon)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,179 | INFO     | extracted standard info from prmon json
[2024-06-26 23:57:04] 2024-06-26 21:56:43,179 | INFO     | extracted standard memory fields from prmon json
[2024-06-26 23:57:04] 2024-06-26 21:56:43,179 | WARNING  | GPU info not found in prmon json
[2024-06-26 23:57:04] 2024-06-26 21:56:43,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-26 23:57:04] 2024-06-26 21:56:43,179 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | fitting pss+swap vs Time
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | model: linear, x: [1719435852.0, 1719435913.0, 1719435974.0, 1719436035.0, 1719436096.0, 1719436157.0, 1719436218.0, 1719436279.0, 1719436340.0, 1719436401.0, 1719
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | sum of square deviations: 38744912.5
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | sum of deviations: -2366077363.500001
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | mean x: 1719437346.5
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | mean y: 2551766.66
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | -- intersect: 105005286861.4975
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | intersect: 105005286861.4975
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | chi2: 0.0762838411359249
[2024-06-26 23:57:04] 2024-06-26 21:56:43,180 | INFO     | -- intersect: 105005286861.4975
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | current memory leak: -61.07 B/s (using 50 data points, chi2=0.08)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | ..............................
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . Timing measurements:
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . get job = 0 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . initial setup = 0 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . payload setup = 1 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . stage-in = 0 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . payload execution = 3449 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . stage-out = 0 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | . log creation = 0 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,181 | INFO     | ..............................
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | 
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | job summary report
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | --------------------------------------------------
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | PanDA job id: 6245351203
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | task id: 40092504
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | errors: (none)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | pilot state: finished 
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | transexitcode: 0
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | exeerrorcode: 0
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | exeerrordiag: 
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | exitcode: 0
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | exitmsg: OK
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | cpuconsumptiontime: 17956 s
[2024-06-26 23:57:04] 2024-06-26 21:56:43,340 | INFO     | nevents: 400
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | neventsw: 0
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | pid: 89144
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | pgrp: 89144
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | corecount: 6
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | event service: False
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | sizes: {0: 2386889, 1: 2387088, 2: 2387294, 11: 2387322, 3454: 2412920, 3455: 2421880, 3457: 2422064, 3460: 2422234}
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | --------------------------------------------------
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | 
[2024-06-26 23:57:04] 2024-06-26 21:56:43,341 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | job 6245351203 has completed (purged errors)
[2024-06-26 23:57:04] 2024-06-26 21:56:43,352 | INFO     | overall cleanup function is called
[2024-06-26 23:57:04] 2024-06-26 21:56:44,357 | INFO     | --- collectZombieJob: --- 10, [89144]
[2024-06-26 23:57:04] 2024-06-26 21:56:44,358 | INFO     | zombie collector waiting for pid 89144
[2024-06-26 23:57:04] 2024-06-26 21:56:44,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-26 23:57:04] 2024-06-26 21:56:45,361 | INFO     | collected zombie processes
[2024-06-26 23:57:04] 2024-06-26 21:56:45,361 | INFO     | will now attempt to kill all subprocesses of pid=89144
[2024-06-26 23:57:04] 2024-06-26 21:56:45,401 | INFO     | process IDs to be killed: [89144] (in reverse order)
[2024-06-26 23:57:04] 2024-06-26 21:56:45,431 | WARNING  | found no corresponding commands to process id(s)
[2024-06-26 23:57:04] 2024-06-26 21:56:45,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-26 23:57:04] 2024-06-26 21:56:45,433 | INFO     | did not find any defunct processes belonging to 89144
[2024-06-26 23:57:04] 2024-06-26 21:56:45,435 | INFO     | did not find any defunct processes belonging to 89144
[2024-06-26 23:57:04] 2024-06-26 21:56:45,435 | INFO     | ready for new job
[2024-06-26 23:57:04] 2024-06-26 21:56:45,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-26 23:57:04] 2024-06-26 21:56:45,436 | INFO     | *************************************
[2024-06-26 23:57:04] 2024-06-26 21:56:45,436 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-26 23:57:04] 2024-06-26 21:56:45,436 | INFO     | *************************************
[2024-06-26 23:57:04] 2024-06-26 21:56:45,436 | INFO     | 
[2024-06-26 23:57:04] 2024-06-26 21:56:45,437 | INFO     | architecture information:
[2024-06-26 23:57:04] 2024-06-26 21:56:45,437 | INFO     | executing command: cat /etc/os-release
[2024-06-26 23:57:04] 2024-06-26 21:56:45,445 | INFO     | cat /etc/os-release:
[2024-06-26 23:57:04] NAME="CentOS Linux"
[2024-06-26 23:57:04] VERSION="7 (Core)"
[2024-06-26 23:57:04] ID="centos"
[2024-06-26 23:57:04] ID_LIKE="rhel fedora"
[2024-06-26 23:57:04] VERSION_ID="7"
[2024-06-26 23:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-26 23:57:04] ANSI_COLOR="0;31"
[2024-06-26 23:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-26 23:57:04] HOME_URL="https://www.centos.org/"
[2024-06-26 23:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-26 23:57:04] 
[2024-06-26 23:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-26 23:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-26 23:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-26 23:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-26 23:57:04] 
[2024-06-26 23:57:04] 2024-06-26 21:56:45,445 | INFO     | *************************************
[2024-06-26 23:57:04] 2024-06-26 21:56:45,948 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2024-06-26 23:57:04] 2024-06-26 21:56:45,955 | INFO     | sufficient remaining disk space (107653103616 B)
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | INFO     | found 0 job(s) in 20 queues
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-26 23:57:04] 2024-06-26 21:56:45,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-26 23:57:04] 2024-06-26 21:56:46,037 | INFO     | all job control threads have been joined
[2024-06-26 23:57:04] 2024-06-26 21:56:46,431 | INFO     | all payload control threads have been joined
[2024-06-26 23:57:04] 2024-06-26 21:56:46,437 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-26 23:57:04] 2024-06-26 21:56:46,437 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-26 23:57:04] 2024-06-26 21:56:46,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-26 23:57:04] 2024-06-26 21:56:46,437 | INFO     | will abort loop
[2024-06-26 23:57:04] 2024-06-26 21:56:46,864 | INFO     | all data control threads have been joined
[2024-06-26 23:57:04] 2024-06-26 21:56:46,961 | INFO     | [job] retrieve thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,041 | INFO     | [job] control thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,278 | INFO     | [job] create_data_payload thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,284 | INFO     | [job] validate thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,361 | INFO     | [payload] execute_payloads thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,434 | INFO     | [payload] control thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,441 | INFO     | [job] job monitor thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,441 | INFO     | [data] copytool_in thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,498 | INFO     | [payload] validate_pre thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,518 | INFO     | [payload] failed_post thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,868 | INFO     | [data] control thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:47,961 | INFO     | [data] copytool_out thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:48,018 | INFO     | [payload] validate_post thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:48,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-26 23:57:04] 2024-06-26 21:56:49,231 | INFO     | [job] queue monitor thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:49,961 | INFO     | [data] queue_monitor thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:57,001 | INFO     | job.realtimelogging is not enabled
[2024-06-26 23:57:04] 2024-06-26 21:56:58,005 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-26 23:57:04] 2024-06-26 21:56:58,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139812080117568)>', '<ExcThread(monitor, started 139811302135552)>']
[2024-06-26 23:57:04] 2024-06-26 21:56:59,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-26 23:57:04] 2024-06-26 21:56:59,001 | INFO     | [monitor] control thread has ended
[2024-06-26 23:57:04] 2024-06-26 21:57:03,904 | INFO     | all workflow threads have been joined
[2024-06-26 23:57:04] 2024-06-26 21:57:03,904 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-26 23:57:04] 2024-06-26 21:57:03,904 | INFO     | traces error code: 0
[2024-06-26 23:57:04] 2024-06-26 21:57:03,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-26 23:57:04] 2024-06-26 21:57:03,957 [wrapper] ==== pilot stdout END ====
[2024-06-26 23:57:04] 2024-06-26 21:57:03,958 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-26 23:57:04] 2024-06-26 21:57:03,959 [wrapper] pilotpid: 82595
[2024-06-26 23:57:04] 2024-06-26 21:57:03,960 [wrapper] Pilot exit status: 0
[2024-06-26 23:57:04] 2024-06-26 21:57:03,965 [wrapper] pandaids: 6245351203
[2024-06-26 23:57:04] 2024-06-26 21:57:03,981 [wrapper] cleanup supervisor_pilot  120277 82596
[2024-06-26 23:57:04] 2024-06-26 21:57:03,982 [wrapper] Test setup, not cleaning
[2024-06-26 23:57:04] 2024-06-26 21:57:03,984 [wrapper] ==== wrapper stdout END ====
[2024-06-26 23:57:04] 2024-06-26 21:57:03,985 [wrapper] ==== wrapper stderr END ====
[2024-06-26 23:57:04] 2024-06-26 21:57:03,987 [wrapper] apfmon messages muted
[2024-06-26 23:57:04]  *** Error codes and diagnostics ***
[2024-06-26 23:57:04]     "exeErrorCode": 0,
[2024-06-26 23:57:04]     "exeErrorDiag": "",
[2024-06-26 23:57:04]     "pilotErrorCode": 0,
[2024-06-26 23:57:04]     "pilotErrorDiag": "",
[2024-06-26 23:57:04]  *** Listing of results directory ***
[2024-06-26 23:57:04] insgesamt 662024
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc    469766 26. Jun 20:54 pilot3.tar.gz
[2024-06-26 23:57:04] -rwx------ 1 boinc boinc     32220 26. Jun 21:09 runpilot2-wrapper.sh
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc      5654 26. Jun 21:09 queuedata.json
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc       100 26. Jun 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-26 23:57:04] -rwxr-xr-x 1 boinc boinc      7986 26. Jun 22:58 run_atlas
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc       105 26. Jun 22:58 job.xml
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc      7153 26. Jun 22:58 init_data.xml
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc 495588316 26. Jun 22:58 EVNT.40092500._000002.pool.root.1
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc     17537 26. Jun 22:58 start_atlas.sh
[2024-06-26 23:57:04] drwxrwx--x 2 boinc boinc      4096 26. Jun 22:58 shared
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc    482497 26. Jun 22:58 input.tar.gz
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc         0 26. Jun 22:58 boinc_lockfile
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc      2632 26. Jun 22:58 pandaJob.out
[2024-06-26 23:57:04] -rw------- 1 boinc boinc       461 26. Jun 22:58 setup.sh.local
[2024-06-26 23:57:04] -rw------- 1 boinc boinc   1034743 26. Jun 22:58 agis_schedconf.cvmfs.json
[2024-06-26 23:57:04] -rw------- 1 boinc boinc         0 26. Jun 22:58 agis_ddmendpoints.agis.ALL.json
[2024-06-26 23:57:04] -rw------- 1 boinc boinc   1321363 26. Jun 22:58 cric_ddmendpoints.json
[2024-06-26 23:57:04] drwx------ 4 boinc boinc      4096 26. Jun 22:58 pilot3
[2024-06-26 23:57:04] -rw------- 1 boinc boinc        95 26. Jun 23:55 pilot_heartbeat.json
[2024-06-26 23:57:04] -rw------- 1 boinc boinc 177594966 26. Jun 23:56 HITS.40092504._000031.pool.root.1
[2024-06-26 23:57:04] -rw------- 1 boinc boinc      1025 26. Jun 23:56 memory_monitor_summary.json
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc      8192 26. Jun 23:56 boinc_mmap_file
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc        27 26. Jun 23:56 wrapper_checkpoint.txt
[2024-06-26 23:57:04] -rw------- 1 boinc boinc    250155 26. Jun 23:56 log.40092504._000031.job.log.tgz.1
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc       530 26. Jun 23:56 boinc_task_state.xml
[2024-06-26 23:57:04] -rw------- 1 boinc boinc      7667 26. Jun 23:56 heartbeat.json
[2024-06-26 23:57:04] -rw------- 1 boinc boinc      4593 26. Jun 23:57 pilotlog.txt
[2024-06-26 23:57:04] -rw------- 1 boinc boinc    340175 26. Jun 23:57 log.40092504._000031.job.log.1
[2024-06-26 23:57:04] -rw------- 1 boinc boinc       357 26. Jun 23:57 output.list
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc       620 26. Jun 23:57 runtime_log
[2024-06-26 23:57:04] -rw------- 1 boinc boinc    604160 26. Jun 23:57 result.tar.gz
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc     11328 26. Jun 23:57 runtime_log.err
[2024-06-26 23:57:04] -rw------- 1 boinc boinc       632 26. Jun 23:57 8YWKDmeCng5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmhhoKDmQkjOwm.diag
[2024-06-26 23:57:04] -rw-r--r-- 1 boinc boinc     21023 26. Jun 23:57 stderr.txt
[2024-06-26 23:57:04] HITS file was successfully produced:
[2024-06-26 23:57:04] -rw------- 1 boinc boinc 177594966 26. Jun 23:56 shared/HITS.pool.root.1
[2024-06-26 23:57:04]  *** Contents of shared directory: ***
[2024-06-26 23:57:04] insgesamt 658504
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc 495588316 26. Jun 22:58 ATLAS.root_0
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc     17537 26. Jun 22:58 start_atlas.sh
[2024-06-26 23:57:04] -rw-r--r-- 2 boinc boinc    482497 26. Jun 22:58 input.tar.gz
[2024-06-26 23:57:04] -rw------- 1 boinc boinc 177594966 26. Jun 23:56 HITS.pool.root.1
[2024-06-26 23:57:04] -rw------- 1 boinc boinc    604160 26. Jun 23:57 result.tar.gz
23:57:05 (78895): run_atlas exited; CPU time 17801.730007
23:57:05 (78895): called boinc_finish(0)

</stderr_txt>
]]>

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