Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-29 17:42:38 (81116): Detected: vboxwrapper 26206
2024-06-29 17:42:38 (81116): Detected: BOINC client v7.24.1
2024-06-29 17:42:39 (81116): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-29 17:42:40 (81116): Successfully copied 'init_data.xml' to the shared directory.
2024-06-29 17:42:40 (81116): Create VM. (boinc_b2816f65735bf99b, slot#3)
2024-06-29 17:42:41 (81116): Setting Memory Size for VM. (4800MB)
2024-06-29 17:42:42 (81116): Setting CPU Count for VM. (8)
2024-06-29 17:42:42 (81116): Setting Chipset Options for VM.
2024-06-29 17:42:42 (81116): Setting Graphics Controller Options for VM.
2024-06-29 17:42:43 (81116): Setting Boot Options for VM.
2024-06-29 17:42:43 (81116): Setting Network Configuration for NAT.
2024-06-29 17:42:43 (81116): Enabling VM Network Access.
2024-06-29 17:42:44 (81116): Disabling USB Support for VM.
2024-06-29 17:42:44 (81116): Disabling COM Port Support for VM.
2024-06-29 17:42:44 (81116): Disabling LPT Port Support for VM.
2024-06-29 17:42:45 (81116): Disabling Audio Support for VM.
2024-06-29 17:42:45 (81116): Disabling Clipboard Support for VM.
2024-06-29 17:42:45 (81116): Disabling Drag and Drop Support for VM.
2024-06-29 17:42:46 (81116): Adding storage controller(s) to VM.
2024-06-29 17:42:46 (81116): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-29 17:42:47 (81116): Adding VirtualBox Guest Additions to VM.
2024-06-29 17:42:47 (81116): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-29 17:42:47 (81116): forwarding host port 62545 to guest port 80
2024-06-29 17:42:47 (81116): Enabling remote desktop for VM.
2024-06-29 17:42:48 (81116): Required extension pack not installed, remote desktop not enabled.
2024-06-29 17:42:48 (81116): Enabling shared directory for VM.
2024-06-29 17:42:48 (81116): Starting VM using VBoxManage interface. (boinc_b2816f65735bf99b, slot#3)
2024-06-29 17:42:54 (81116): Successfully started VM. (PID = '103080')
2024-06-29 17:42:54 (81116): Reporting VM Process ID to BOINC.
2024-06-29 17:42:54 (81116): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-29 17:42:54 (81116): Guest Log: CPUID EDX: 0x178bfbff
2024-06-29 17:42:54 (81116): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-29 17:42:54 (81116): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-29 17:42:54 (81116): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-29 17:42:54 (81116): Detected: Web Application Enabled (http://localhost:62545)
2024-06-29 17:42:54 (81116): Preference change detected
2024-06-29 17:42:54 (81116): Setting CPU throttle for VM. (100%)
2024-06-29 17:42:54 (81116): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-29 17:42:56 (81116): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-29 17:42:56 (81116): Guest Log: BIOS: Booting from Hard Disk...
2024-06-29 17:42:59 (81116): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-29 17:42:59 (81116): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-29 17:42:59 (81116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-29 17:43:08 (81116): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-29 17:43:08 (81116): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-29 17:43:21 (81116): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000303 main     Log opened 2024-06-29T17:43:19.874686000Z
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000432 main     OS Product: Linux
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000477 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000512 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000546 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000547 main     Process ID: 1367
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.000548 main     Package type: LINUX_64BITS_GENERIC
2024-06-29 17:43:21 (81116): Guest Log: 00:00:00.001819 main     5.2.32 r132073 started. Verbose level = 0
2024-06-29 17:43:22 (81116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-29 17:43:22 (81116): Guest Log: [INFO] Mounting shared directory
2024-06-29 17:43:22 (81116): Guest Log: [INFO] Checking for init_data.xml
2024-06-29 17:43:26 (81116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-29 17:43:27 (81116): Guest Log: [INFO] Detected branch: prod
2024-06-29 17:43:27 (81116): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-29 17:43:27 (81116): Guest Log: Copying input files
2024-06-29 17:43:31 (81116): Guest Log: 00:00:10.007883 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 681 019 000ns (GuestNow=1 719 675 811 198 546 000 ns GuestLast=1 719 682 999 879 565 000 ns fSetTimeLastLoop=true )
2024-06-29 17:43:35 (81116): Guest Log: Copied input files into RunAtlas.
2024-06-29 17:43:35 (81116): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-29 17:43:35 (81116): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-29 17:43:35 (81116): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-29 17:43:35 (81116): Guest Log: Further information can be found at the LHC@home message board.
2024-06-29 17:43:47 (81116): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-29 17:43:47 (81116): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-29 17:43:47 (81116): Guest Log: 2.6.3.0 1646 0 30196 134433 4 1 3117207 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-29 17:43:50 (81116): Guest Log: copied the webapp to /var/www
2024-06-29 17:43:50 (81116): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-29 17:43:50 (81116): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-29 17:43:50 (81116): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-29 17:43:50 (81116): Guest Log:  *** Starting ATLAS job. (PandaID=6245298851 taskID=40092550) ***
2024-06-29 19:22:58 (81116): Status Report: Elapsed Time: '6000.000000'
2024-06-29 19:22:58 (81116): Status Report: CPU Time: '40077.375000'
2024-06-29 19:48:29 (81116): Guest Log:  *** Job finished ***
2024-06-29 19:48:29 (81116): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:18,459 | INFO     | [data] copytool_out thread has finished
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:18,927 | INFO     | [job] queue monitor thread has finished
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:19,683 | INFO     | [data] queue_monitor thread has finished
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:21,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175538239296)>', '<ExcThread(monitor, started 140174436591360)>']
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:21,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:21,690 | INFO     | [monitor] control thread has ended
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,730 | INFO     | all workflow threads have been joined
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,731 | INFO     | end of generic workflow (traces error code: 0)
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,731 | INFO     | traces error code: 0
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,969 [wrapper] ==== pilot stdout END ====
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,976 [wrapper] ==== wrapper stdout RESUME ====
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,984 [wrapper] pilotpid: 6049
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:26,990 [wrapper] Pilot exit status: 0
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,178 [wrapper] pandaids: 6245298851
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,218 [wrapper] cleanup supervisor_pilot  4613 6050
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,225 [wrapper] Test setup, not cleaning
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,232 [wrapper] ==== wrapper stdout END ====
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,238 [wrapper] ==== wrapper stderr END ====
2024-06-29 19:48:29 (81116): Guest Log: 2024-06-29 17:48:27,260 [wrapper] apfmon messages muted
2024-06-29 19:48:29 (81116): Guest Log:  *** Error codes and diagnostics ***
2024-06-29 19:48:29 (81116): Guest Log:     "exeErrorCode": 0,
2024-06-29 19:48:29 (81116): Guest Log:     "exeErrorDiag": "",
2024-06-29 19:48:29 (81116): Guest Log:     "pilotErrorCode": 0,
2024-06-29 19:48:29 (81116): Guest Log:     "pilotErrorDiag": "",
2024-06-29 19:48:29 (81116): Guest Log:  *** Listing of results directory ***
2024-06-29 19:48:29 (81116): Guest Log: total 190888
2024-06-29 19:48:29 (81116): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 26 17:54 pilot3.tar.gz
2024-06-29 19:48:29 (81116): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 26 18:13 runpilot2-wrapper.sh
2024-06-29 19:48:29 (81116): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 26 18:13 queuedata.json
2024-06-29 19:48:29 (81116): Guest Log: -rwxr-xr-x. 1 atlas atlas      9142 Jun 29 15:43 init_data.xml
2024-06-29 19:48:29 (81116): Guest Log: -rwxr-xr-x. 1 atlas atlas    482503 Jun 29 15:43 input.tar.gz
2024-06-29 19:48:29 (81116): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 29 15:43 start_atlas.sh
2024-06-29 19:48:29 (81116): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 29 15:43 EVNT.40092547._000003.pool.root.1 -> /data/./ATLAS.root_0
2024-06-29 19:48:29 (81116): Guest Log: -rw-r--r--. 1 atlas atlas      2629 Jun 29 15:43 pandaJob.out
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas       424 Jun 29 15:43 setup.sh.local
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas   1036640 Jun 29 15:44 agis_schedconf.cvmfs.json
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas         0 Jun 29 15:44 agis_ddmendpoints.agis.ALL.json
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas   1321378 Jun 29 15:44 cric_ddmendpoints.json
2024-06-29 19:48:29 (81116): Guest Log: drwx------. 4 atlas atlas      4096 Jun 29 15:44 pilot3
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas 190287137 Jun 29 17:47 HITS.40092550._000064.pool.root.1
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas      1032 Jun 29 17:47 memory_monitor_summary.json
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas    318938 Jun 29 17:47 log.40092550._000064.job.log.tgz.1
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas        95 Jun 29 17:48 pilot_heartbeat.json
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas      7733 Jun 29 17:48 heartbeat.json
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 29 17:48 pilotlog.txt
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas    536212 Jun 29 17:48 log.40092550._000064.job.log.1
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas       357 Jun 29 17:48 output.list
2024-06-29 19:48:29 (81116): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 29 17:48 runtime_log
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas    870400 Jun 29 17:48 result.tar.gz
2024-06-29 19:48:29 (81116): Guest Log: -rw-r--r--. 1 atlas atlas     10930 Jun 29 17:48 runtime_log.err
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas       645 Jun 29 17:48 rOBMDmRKmg5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmUAZKDmSxbezm.diag
2024-06-29 19:48:29 (81116): Guest Log: Looking for outputfile HITS.40092550._000064.pool.root.1
2024-06-29 19:48:29 (81116): Guest Log: HITS file was successfully produced
2024-06-29 19:48:29 (81116): Guest Log: -rw-------. 1 atlas atlas 190287137 Jun 29 17:47 /home/atlas/RunAtlas/HITS.40092550._000064.pool.root.1
2024-06-29 19:48:30 (81116): Guest Log: Successfully finished the ATLAS job!
2024-06-29 19:48:30 (81116): Guest Log: Copying the results back to the shared directory!
2024-06-29 19:48:30 (81116): Guest Log:  *** Contents of shared directory: ***
2024-06-29 19:48:30 (81116): Guest Log: total 676040
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root 500585214 Jun 29 15:42 ATLAS.root_0
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root 190287137 Jun 29 17:48 HITS.pool.root.1
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root      9142 Jun 29 15:42 init_data.xml
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root    482503 Jun 26 18:18 input.tar.gz
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root    870400 Jun 29 17:48 result.tar.gz
2024-06-29 19:48:30 (81116): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 26 18:18 start_atlas.sh
2024-06-29 19:48:30 (81116): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-29 19:48:30 (81116): VM Completion File Detected.
2024-06-29 19:48:30 (81116): Powering off VM.
2024-06-29 19:48:32 (81116): Successfully stopped VM.
2024-06-29 19:48:32 (81116): Deregistering VM. (boinc_b2816f65735bf99b, slot#3)
2024-06-29 19:48:32 (81116): Removing network bandwidth throttle group from VM.
2024-06-29 19:48:33 (81116): Removing VM from VirtualBox.
19:48:38 (81116): called boinc_finish(0)

</stderr_txt>
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