Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:46:22 (582196): wrapper (7.7.26015): starting
07:46:22 (582196): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 07:46:22] Arguments: --nthreads 4
[2024-06-27 07:46:22] Threads: 4
[2024-06-27 07:46:22] Checking for CVMFS
[2024-06-27 07:46:22] No cvmfs_config command found, will try listing directly
[2024-06-27 07:46:22] CVMFS is ok
[2024-06-27 07:46:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 07:46:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 07:46:22] Further information can be found at the LHC@home message board.
[2024-06-27 07:46:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 07:46:22] Checking for apptainer binary...
[2024-06-27 07:46:22] which: no apptainer in ((null))
[2024-06-27 07:46:22] apptainer is not installed, using version from CVMFS
[2024-06-27 07:46:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 07:46:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2024-06-27 07:46:23] apptainer works
[2024-06-27 07:46:23] Set ATHENA_PROC_NUMBER=4
[2024-06-27 07:46:23] Set ATHENA_CORE_NUMBER=4
[2024-06-27 07:46:23] Starting ATLAS job with PandaID=6245276901
[2024-06-27 07:46:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-27 09:41:19]  *** The last 200 lines of the pilot log: ***
[2024-06-27 09:41:19] 2024-06-27 07:41:06,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-27 09:41:19] 2024-06-27 07:41:06,607 | INFO     | fitting pss+swap vs Time
[2024-06-27 09:41:19] 2024-06-27 07:41:06,607 | INFO     | model: linear, x: [1719467221.0, 1719467282.0, 1719467343.0, 1719467404.0, 1719467465.0, 1719467526.0, 1719467587.0, 1719467648.0, 1719467709.0, 1719467770.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,608 | INFO     | sum of square deviations: 447383272.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,608 | INFO     | sum of deviations: 31278165653.999985
[2024-06-27 09:41:19] 2024-06-27 07:41:06,609 | INFO     | mean x: 1719470637.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,609 | INFO     | mean y: 2248354.4336283184
[2024-06-27 09:41:19] 2024-06-27 07:41:06,609 | INFO     | -- intersect: -120212097570.5854
[2024-06-27 09:41:19] 2024-06-27 07:41:06,609 | INFO     | intersect: -120212097570.5854
[2024-06-27 09:41:19] 2024-06-27 07:41:06,610 | INFO     | chi2: 4.097937876099188
[2024-06-27 09:41:19] 2024-06-27 07:41:06,610 | INFO     | model: linear, x: [1719467221.0, 1719467282.0, 1719467343.0, 1719467404.0, 1719467465.0, 1719467526.0, 1719467587.0, 1719467648.0, 1719467709.0, 1719467770.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,611 | INFO     | sum of square deviations: 390582207.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,611 | INFO     | sum of deviations: 36480803102.49999
[2024-06-27 09:41:19] 2024-06-27 07:41:06,611 | INFO     | mean x: 1719470484.5
[2024-06-27 09:41:19] 2024-06-27 07:41:06,612 | INFO     | mean y: 2261647.342592593
[2024-06-27 09:41:19] 2024-06-27 07:41:06,612 | INFO     | -- intersect: -160598152456.01868
[2024-06-27 09:41:19] 2024-06-27 07:41:06,612 | INFO     | intersect: -160598152456.01868
[2024-06-27 09:41:19] 2024-06-27 07:41:06,612 | INFO     | chi2: 3.347084660842236
[2024-06-27 09:41:19] 2024-06-27 07:41:06,613 | INFO     | current chi2=3.347084660842236 (change=18.32270859048957 %)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,613 | INFO     | right removable region: 107
[2024-06-27 09:41:19] 2024-06-27 07:41:06,613 | INFO     | model: linear, x: [1719467526.0, 1719467587.0, 1719467648.0, 1719467709.0, 1719467770.0, 1719467831.0, 1719467892.0, 1719467953.0, 1719468014.0, 1719468075.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,613 | INFO     | sum of square deviations: 390582207.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,614 | INFO     | sum of deviations: 7935282417.000001
[2024-06-27 09:41:19] 2024-06-27 07:41:06,614 | INFO     | mean x: 1719470789.5
[2024-06-27 09:41:19] 2024-06-27 07:41:06,614 | INFO     | mean y: 2310590.925925926
[2024-06-27 09:41:19] 2024-06-27 07:41:06,615 | INFO     | -- intersect: -34931401385.52481
[2024-06-27 09:41:19] 2024-06-27 07:41:06,615 | INFO     | intersect: -34931401385.52481
[2024-06-27 09:41:19] 2024-06-27 07:41:06,615 | INFO     | chi2: 1.9189896337945604
[2024-06-27 09:41:19] 2024-06-27 07:41:06,615 | INFO     | current chi2=1.9189896337945604 (change=53.17182222339496 %)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,616 | INFO     | model: linear, x: [1719467831.0, 1719467892.0, 1719467953.0, 1719468014.0, 1719468075.0, 1719468136.0, 1719468197.0, 1719468258.0, 1719468319.0, 1719468380.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,616 | INFO     | sum of square deviations: 338804492.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,616 | INFO     | sum of deviations: -8812941999.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,617 | INFO     | mean x: 1719470942.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,617 | INFO     | mean y: 2359941.485436893
[2024-06-27 09:41:19] 2024-06-27 07:41:06,617 | INFO     | -- intersect: 44729032812.19783
[2024-06-27 09:41:19] 2024-06-27 07:41:06,617 | INFO     | intersect: 44729032812.19783
[2024-06-27 09:41:19] 2024-06-27 07:41:06,617 | INFO     | chi2: 0.8880162015829092
[2024-06-27 09:41:19] 2024-06-27 07:41:06,618 | INFO     | current chi2=0.8880162015829092 (change=53.72480466051456 %)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,618 | INFO     | model: linear, x: [1719468136.0, 1719468197.0, 1719468258.0, 1719468319.0, 1719468380.0, 1719468441.0, 1719468502.0, 1719468563.0, 1719468624.0, 1719468685.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,618 | INFO     | sum of square deviations: 291817564.5
[2024-06-27 09:41:19] 2024-06-27 07:41:06,619 | INFO     | sum of deviations: -8616117264.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,619 | INFO     | mean x: 1719471094.5
[2024-06-27 09:41:19] 2024-06-27 07:41:06,619 | INFO     | mean y: 2358992.612244898
[2024-06-27 09:41:19] 2024-06-27 07:41:06,619 | INFO     | -- intersect: 50770943151.19337
[2024-06-27 09:41:19] 2024-06-27 07:41:06,619 | INFO     | intersect: 50770943151.19337
[2024-06-27 09:41:19] 2024-06-27 07:41:06,620 | INFO     | chi2: 0.8434507904224283
[2024-06-27 09:41:19] 2024-06-27 07:41:06,620 | INFO     | current chi2=0.8434507904224283 (change=5.018535819621532 %)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,620 | INFO     | left removable region: 30
[2024-06-27 09:41:19] 2024-06-27 07:41:06,620 | INFO     | model: linear, x: [1719469051.0, 1719469112.0, 1719469173.0, 1719469234.0, 1719469295.0, 1719469356.0, 1719469417.0, 1719469478.0, 1719469539.0, 1719469600.0, 1719
[2024-06-27 09:41:19] 2024-06-27 07:41:06,620 | INFO     | sum of square deviations: 141539398.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,621 | INFO     | sum of deviations: 512959979.9999999
[2024-06-27 09:41:19] 2024-06-27 07:41:06,621 | INFO     | mean x: 1719471369.0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,621 | INFO     | mean y: 2368757.6363636362
[2024-06-27 09:41:19] 2024-06-27 07:41:06,622 | INFO     | -- intersect: -6229253048.843358
[2024-06-27 09:41:19] 2024-06-27 07:41:06,622 | INFO     | intersect: -6229253048.843358
[2024-06-27 09:41:19] 2024-06-27 07:41:06,622 | INFO     | chi2: 6.138374040390993e-05
[2024-06-27 09:41:19] 2024-06-27 07:41:06,623 | INFO     | -- intersect: -6229253048.843358
[2024-06-27 09:41:19] 2024-06-27 07:41:06,623 | INFO     | current memory leak: 3.62 B/s (using 77 data points, chi2=0.00)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | ..............................
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . Timing measurements:
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . get job = 0 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . initial setup = 1 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . payload setup = 7 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . stage-in = 0 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,624 | INFO     | . payload execution = 6836 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,625 | INFO     | . stage-out = 0 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,625 | INFO     | . log creation = 0 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,625 | INFO     | ..............................
[2024-06-27 09:41:19] 2024-06-27 07:41:06,731 | INFO     | 
[2024-06-27 09:41:19] 2024-06-27 07:41:06,731 | INFO     | job summary report
[2024-06-27 09:41:19] 2024-06-27 07:41:06,731 | INFO     | --------------------------------------------------
[2024-06-27 09:41:19] 2024-06-27 07:41:06,731 | INFO     | PanDA job id: 6245276901
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | task id: 40092568
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | errors: (none)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | pilot state: finished 
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | transexitcode: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | exeerrorcode: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | exeerrordiag: 
[2024-06-27 09:41:19] 2024-06-27 07:41:06,732 | INFO     | exitcode: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | exitmsg: OK
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | cpuconsumptiontime: 24302 s
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | nevents: 400
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | neventsw: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | pid: 592730
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | pgrp: 592730
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | corecount: 4
[2024-06-27 09:41:19] 2024-06-27 07:41:06,733 | INFO     | event service: False
[2024-06-27 09:41:19] 2024-06-27 07:41:06,734 | INFO     | sizes: {0: 2386162, 1: 2387097, 6: 2387303, 12: 2387331, 6848: 2414377, 6849: 2423543, 6857: 2423657}
[2024-06-27 09:41:19] 2024-06-27 07:41:06,734 | INFO     | --------------------------------------------------
[2024-06-27 09:41:19] 2024-06-27 07:41:06,734 | INFO     | 
[2024-06-27 09:41:19] 2024-06-27 07:41:06,734 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2024-06-27 09:41:19] 2024-06-27 07:41:06,762 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,763 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,763 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,763 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,765 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-27 09:41:19] 2024-06-27 07:41:06,766 | INFO     | job 6245276901 has completed (purged errors)
[2024-06-27 09:41:19] 2024-06-27 07:41:06,766 | INFO     | overall cleanup function is called
[2024-06-27 09:41:19] 2024-06-27 07:41:07,774 | INFO     | --- collectZombieJob: --- 10, [592730]
[2024-06-27 09:41:19] 2024-06-27 07:41:07,774 | INFO     | zombie collector waiting for pid 592730
[2024-06-27 09:41:19] 2024-06-27 07:41:07,775 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-27 09:41:19] 2024-06-27 07:41:08,780 | INFO     | collected zombie processes
[2024-06-27 09:41:19] 2024-06-27 07:41:08,780 | INFO     | will now attempt to kill all subprocesses of pid=592730
[2024-06-27 09:41:19] 2024-06-27 07:41:08,884 | INFO     | process IDs to be killed: [592730] (in reverse order)
[2024-06-27 09:41:19] 2024-06-27 07:41:08,955 | WARNING  | found no corresponding commands to process id(s)
[2024-06-27 09:41:19] 2024-06-27 07:41:08,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-27 09:41:19] 2024-06-27 07:41:08,961 | INFO     | did not find any defunct processes belonging to 592730
[2024-06-27 09:41:19] 2024-06-27 07:41:08,965 | INFO     | did not find any defunct processes belonging to 592730
[2024-06-27 09:41:19] 2024-06-27 07:41:08,966 | INFO     | ready for new job
[2024-06-27 09:41:19] 2024-06-27 07:41:08,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-27 09:41:19] 2024-06-27 07:41:08,968 | INFO     | *************************************
[2024-06-27 09:41:19] 2024-06-27 07:41:08,968 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-27 09:41:19] 2024-06-27 07:41:08,968 | INFO     | *************************************
[2024-06-27 09:41:19] 2024-06-27 07:41:08,968 | INFO     | 
[2024-06-27 09:41:19] 2024-06-27 07:41:08,971 | INFO     | architecture information:
[2024-06-27 09:41:19] 2024-06-27 07:41:08,971 | INFO     | executing command: cat /etc/os-release
[2024-06-27 09:41:19] 2024-06-27 07:41:08,987 | INFO     | cat /etc/os-release:
[2024-06-27 09:41:19] NAME="CentOS Linux"
[2024-06-27 09:41:19] VERSION="7 (Core)"
[2024-06-27 09:41:19] ID="centos"
[2024-06-27 09:41:19] ID_LIKE="rhel fedora"
[2024-06-27 09:41:19] VERSION_ID="7"
[2024-06-27 09:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-27 09:41:19] ANSI_COLOR="0;31"
[2024-06-27 09:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-27 09:41:19] HOME_URL="https://www.centos.org/"
[2024-06-27 09:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-27 09:41:19] 
[2024-06-27 09:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-27 09:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-27 09:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-27 09:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-27 09:41:19] 
[2024-06-27 09:41:19] 2024-06-27 07:41:08,987 | INFO     | *************************************
[2024-06-27 09:41:19] 2024-06-27 07:41:09,491 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2024-06-27 09:41:19] 2024-06-27 07:41:09,512 | INFO     | sufficient remaining disk space (1677112377344 B)
[2024-06-27 09:41:19] 2024-06-27 07:41:09,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-27 09:41:19] 2024-06-27 07:41:09,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-27 09:41:19] 2024-06-27 07:41:09,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-27 09:41:19] 2024-06-27 07:41:09,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-27 09:41:19] 2024-06-27 07:41:09,627 | INFO     | all payload control threads have been joined
[2024-06-27 09:41:19] 2024-06-27 07:41:09,632 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-27 09:41:19] 2024-06-27 07:41:09,632 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-27 09:41:19] 2024-06-27 07:41:09,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-27 09:41:19] 2024-06-27 07:41:09,633 | INFO     | will abort loop
[2024-06-27 09:41:19] 2024-06-27 07:41:09,696 | INFO     | all job control threads have been joined
[2024-06-27 09:41:19] 2024-06-27 07:41:10,216 | INFO     | found 0 job(s) in 20 queues
[2024-06-27 09:41:19] 2024-06-27 07:41:10,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-27 09:41:19] 2024-06-27 07:41:10,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-27 09:41:19] 2024-06-27 07:41:10,519 | INFO     | [job] retrieve thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,596 | INFO     | all data control threads have been joined
[2024-06-27 09:41:19] 2024-06-27 07:41:10,632 | INFO     | [payload] control thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,638 | INFO     | [job] job monitor thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,701 | INFO     | [job] control thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,715 | INFO     | [payload] failed_post thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,812 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:10,818 | INFO     | [data] copytool_in thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,345 | INFO     | [payload] validate_post thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,501 | INFO     | [job] validate thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,520 | INFO     | [data] copytool_out thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,601 | INFO     | [data] control thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-27 09:41:19] 2024-06-27 07:41:11,781 | INFO     | [job] create_data_payload thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,836 | INFO     | [payload] execute_payloads thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:11,891 | INFO     | [payload] validate_pre thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:12,747 | INFO     | [job] queue monitor thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:13,520 | INFO     | [data] queue_monitor thread has finished
[2024-06-27 09:41:19] 2024-06-27 07:41:14,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47164084196416)>', '<ExcThread(monitor, started 47164266571520)>']
[2024-06-27 09:41:19] 2024-06-27 07:41:14,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-27 09:41:19] 2024-06-27 07:41:14,238 | INFO     | [monitor] control thread has ended
[2024-06-27 09:41:19] 2024-06-27 07:41:19,046 | INFO     | all workflow threads have been joined
[2024-06-27 09:41:19] 2024-06-27 07:41:19,046 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-27 09:41:19] 2024-06-27 07:41:19,046 | INFO     | traces error code: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:19,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-27 09:41:19] 2024-06-27 07:41:19,171 [wrapper] ==== pilot stdout END ====
[2024-06-27 09:41:19] 2024-06-27 07:41:19,175 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-27 09:41:19] 2024-06-27 07:41:19,179 [wrapper] pilotpid: 585880
[2024-06-27 09:41:19] 2024-06-27 07:41:19,183 [wrapper] Pilot exit status: 0
[2024-06-27 09:41:19] 2024-06-27 07:41:19,196 [wrapper] pandaids: 6245276901
[2024-06-27 09:41:19] 2024-06-27 07:41:19,251 [wrapper] cleanup supervisor_pilot  657701 585881
[2024-06-27 09:41:19] 2024-06-27 07:41:19,254 [wrapper] Test setup, not cleaning
[2024-06-27 09:41:19] 2024-06-27 07:41:19,258 [wrapper] ==== wrapper stdout END ====
[2024-06-27 09:41:19] 2024-06-27 07:41:19,262 [wrapper] ==== wrapper stderr END ====
[2024-06-27 09:41:19] 2024-06-27 07:41:19,269 [wrapper] apfmon messages muted
[2024-06-27 09:41:19]  *** Error codes and diagnostics ***
[2024-06-27 09:41:19]     "exeErrorCode": 0,
[2024-06-27 09:41:19]     "exeErrorDiag": "",
[2024-06-27 09:41:19]     "pilotErrorCode": 0,
[2024-06-27 09:41:19]     "pilotErrorDiag": "",
[2024-06-27 09:41:19]  *** Listing of results directory ***
[2024-06-27 09:41:19] total 659840
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc    469766 Jun 26 19:54 pilot3.tar.gz
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc      5654 Jun 26 19:58 queuedata.json
[2024-06-27 09:41:19] -rwx------ 1 boinc boinc     32220 Jun 26 19:58 runpilot2-wrapper.sh
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc       100 Jun 27 07:46 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-27 09:41:19] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 07:46 run_atlas
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc       105 Jun 27 07:46 job.xml
[2024-06-27 09:41:19] drwxrwx--x 2 boinc boinc      4096 Jun 27 07:46 shared
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc    482502 Jun 27 07:46 input.tar.gz
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc      6456 Jun 27 07:46 init_data.xml
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc 494471438 Jun 27 07:46 EVNT.40092566._000001.pool.root.1
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc     17537 Jun 27 07:46 start_atlas.sh
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc         0 Jun 27 07:46 boinc_lockfile
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc      2637 Jun 27 07:46 pandaJob.out
[2024-06-27 09:41:19] -rw------- 1 boinc boinc       424 Jun 27 07:46 setup.sh.local
[2024-06-27 09:41:19] -rw------- 1 boinc boinc   1035479 Jun 27 07:46 agis_schedconf.cvmfs.json
[2024-06-27 09:41:19] -rw------- 1 boinc boinc         0 Jun 27 07:46 agis_ddmendpoints.agis.ALL.json
[2024-06-27 09:41:19] -rw------- 1 boinc boinc   1321363 Jun 27 07:46 cric_ddmendpoints.json
[2024-06-27 09:41:19] drwx------ 4 boinc boinc      4096 Jun 27 07:46 pilot3
[2024-06-27 09:41:19] -rw------- 1 boinc boinc 175792907 Jun 27 09:40 HITS.40092568._000008.pool.root.1
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc       530 Jun 27 09:40 boinc_task_state.xml
[2024-06-27 09:41:19] -rw------- 1 boinc boinc        95 Jun 27 09:40 pilot_heartbeat.json
[2024-06-27 09:41:19] -rw------- 1 boinc boinc      1037 Jun 27 09:40 memory_monitor_summary.json
[2024-06-27 09:41:19] -rw------- 1 boinc boinc    255898 Jun 27 09:40 log.40092568._000008.job.log.tgz.1
[2024-06-27 09:41:19] -rw------- 1 boinc boinc      7736 Jun 27 09:41 heartbeat.json
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc        27 Jun 27 09:41 wrapper_checkpoint.txt
[2024-06-27 09:41:19] -rw------- 1 boinc boinc      4408 Jun 27 09:41 pilotlog.txt
[2024-06-27 09:41:19] -rw------- 1 boinc boinc    674733 Jun 27 09:41 log.40092568._000008.job.log.1
[2024-06-27 09:41:19] -rw------- 1 boinc boinc       357 Jun 27 09:41 output.list
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc       620 Jun 27 09:41 runtime_log
[2024-06-27 09:41:19] -rw------- 1 boinc boinc    952320 Jun 27 09:41 result.tar.gz
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc     11409 Jun 27 09:41 runtime_log.err
[2024-06-27 09:41:19] -rw------- 1 boinc boinc       654 Jun 27 09:41 dErKDmR5lg5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm9coKDmTUQlXn.diag
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc      8192 Jun 27 09:41 boinc_mmap_file
[2024-06-27 09:41:19] -rw-r--r-- 1 boinc boinc     21273 Jun 27 09:41 stderr.txt
[2024-06-27 09:41:19] HITS file was successfully produced:
[2024-06-27 09:41:19] -rw------- 1 boinc boinc 175792907 Jun 27 09:40 shared/HITS.pool.root.1
[2024-06-27 09:41:19]  *** Contents of shared directory: ***
[2024-06-27 09:41:19] total 655992
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc    482502 Jun 27 07:46 input.tar.gz
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc 494471438 Jun 27 07:46 ATLAS.root_0
[2024-06-27 09:41:19] -rw-r--r-- 2 boinc boinc     17537 Jun 27 07:46 start_atlas.sh
[2024-06-27 09:41:19] -rw------- 1 boinc boinc 175792907 Jun 27 09:40 HITS.pool.root.1
[2024-06-27 09:41:19] -rw------- 1 boinc boinc    952320 Jun 27 09:41 result.tar.gz
09:41:21 (582196): run_atlas exited; CPU time 24200.762269
09:41:21 (582196): called boinc_finish(0)

</stderr_txt>
]]>

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