Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-28 09:03:13 (2156): Detected: vboxwrapper 26206
2024-06-28 09:03:13 (2156): Detected: BOINC client v7.16.5
2024-06-28 09:03:14 (2156): Detected: VirtualBox VboxManage Interface (Version: 5.1.22)
2024-06-28 09:03:14 (2156): Successfully copied 'init_data.xml' to the shared directory.
2024-06-28 09:03:15 (2156): Create VM. (boinc_63c2fb0a9bb1364b, slot#0)
2024-06-28 09:03:15 (2156): Setting Memory Size for VM. (4400MB)
2024-06-28 09:03:15 (2156): Setting CPU Count for VM. (4)
2024-06-28 09:03:16 (2156): Setting Chipset Options for VM.
2024-06-28 09:03:16 (2156): Setting Graphics Controller Options for VM.
2024-06-28 09:03:16 (2156): Setting Boot Options for VM.
2024-06-28 09:03:17 (2156): Setting Network Configuration for NAT.
2024-06-28 09:03:17 (2156): Enabling VM Network Access.
2024-06-28 09:03:17 (2156): Disabling USB Support for VM.
2024-06-28 09:03:17 (2156): Disabling COM Port Support for VM.
2024-06-28 09:03:18 (2156): Disabling LPT Port Support for VM.
2024-06-28 09:03:18 (2156): Disabling Audio Support for VM.
2024-06-28 09:03:18 (2156): Disabling Clipboard Support for VM.
2024-06-28 09:03:18 (2156): Disabling Drag and Drop Support for VM.
2024-06-28 09:03:19 (2156): Adding storage controller(s) to VM.
2024-06-28 09:03:19 (2156): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-28 09:03:19 (2156): Adding VirtualBox Guest Additions to VM.
2024-06-28 09:03:20 (2156): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-28 09:03:20 (2156): forwarding host port 60460 to guest port 80
2024-06-28 09:03:20 (2156): Enabling remote desktop for VM.
2024-06-28 09:03:21 (2156): Enabling shared directory for VM.
2024-06-28 09:03:21 (2156): Starting VM using VBoxManage interface. (boinc_63c2fb0a9bb1364b, slot#0)
2024-06-28 09:03:25 (2156): Successfully started VM. (PID = '15324')
2024-06-28 09:03:25 (2156): Reporting VM Process ID to BOINC.
2024-06-28 09:03:25 (2156): Guest Log: BIOS: VirtualBox 5.1.22
2024-06-28 09:03:25 (2156): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-28 09:03:25 (2156): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-28 09:03:25 (2156): Detected: Web Application Enabled (http://localhost:60460)
2024-06-28 09:03:25 (2156): Detected: Remote Desktop Enabled (localhost:60461)
2024-06-28 09:03:25 (2156): Preference change detected
2024-06-28 09:03:25 (2156): Setting CPU throttle for VM. (100%)
2024-06-28 09:03:25 (2156): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-28 09:03:27 (2156): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-28 09:03:27 (2156): Guest Log: BIOS: Booting from Hard Disk...
2024-06-28 09:03:30 (2156): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-28 09:03:30 (2156): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-28 09:03:30 (2156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-28 09:03:38 (2156): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-28 09:03:38 (2156): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-28 09:04:26 (2156): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000185 main     Log opened 2024-06-28T09:04:24.421940000Z
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000304 main     OS Product: Linux
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000378 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000407 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000443 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000443 main     Process ID: 1319
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.000444 main     Package type: LINUX_64BITS_GENERIC
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.001716 main     5.2.32 r132073 started. Verbose level = 0
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.002493 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.002619 main     Session 0 is about to close ...
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.002648 main     Stopping all guest processes ...
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.002676 main     Closing all guest files ...
2024-06-28 09:04:26 (2156): Guest Log: 00:00:00.002953 main     Ended.
2024-06-28 09:04:27 (2156): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-28 09:04:27 (2156): Guest Log: [INFO] Mounting shared directory
2024-06-28 09:04:27 (2156): Guest Log: [INFO] Checking for init_data.xml
2024-06-28 09:07:10 (2156): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-28 09:07:10 (2156): Guest Log: [INFO] Detected branch: prod
2024-06-28 09:07:10 (2156): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-28 09:07:10 (2156): Guest Log: Copying input files
2024-06-28 09:07:16 (2156): Guest Log: Copied input files into RunAtlas.
2024-06-28 09:07:16 (2156): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-28 09:07:16 (2156): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-28 09:07:16 (2156): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-28 09:07:16 (2156): Guest Log: Further information can be found at the LHC@home message board.
2024-06-28 09:09:18 (2156): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-28 09:09:18 (2156): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-28 09:09:18 (2156): Guest Log: 2.6.3.0 1638 3 32180 134376 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-28 09:09:21 (2156): Guest Log: copied the webapp to /var/www
2024-06-28 09:09:21 (2156): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-28 09:09:21 (2156): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-28 09:09:21 (2156): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-28 09:09:21 (2156): Guest Log:  *** Starting ATLAS job. (PandaID=6244921311 taskID=38921013) ***
2024-06-28 10:43:26 (2156): Status Report: Elapsed Time: '6000.000000'
2024-06-28 10:43:26 (2156): Status Report: CPU Time: '18143.477904'
2024-06-28 12:23:26 (2156): Status Report: Elapsed Time: '12000.000000'
2024-06-28 12:23:26 (2156): Status Report: CPU Time: '42127.414846'
2024-06-28 14:03:26 (2156): Status Report: Elapsed Time: '18000.000000'
2024-06-28 14:03:26 (2156): Status Report: CPU Time: '66110.571783'
2024-06-28 15:43:55 (2156): Status Report: Elapsed Time: '24000.000000'
2024-06-28 15:43:55 (2156): Status Report: CPU Time: '88885.220173'
2024-06-28 17:23:56 (2156): Status Report: Elapsed Time: '30000.000000'
2024-06-28 17:23:56 (2156): Status Report: CPU Time: '112866.411498'
2024-06-28 19:03:56 (2156): Status Report: Elapsed Time: '36000.000000'
2024-06-28 19:03:56 (2156): Status Report: CPU Time: '136793.205274'
2024-06-28 20:43:57 (2156): Status Report: Elapsed Time: '42000.000000'
2024-06-28 20:43:57 (2156): Status Report: CPU Time: '160776.565012'
2024-06-28 22:23:57 (2156): Status Report: Elapsed Time: '48000.000000'
2024-06-28 22:23:57 (2156): Status Report: CPU Time: '184760.969958'
2024-06-29 00:03:57 (2156): Status Report: Elapsed Time: '54000.000000'
2024-06-29 00:03:57 (2156): Status Report: CPU Time: '208743.643292'
2024-06-29 00:32:27 (2156): Guest Log:  *** Job finished ***
2024-06-29 00:32:28 (2156): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:13,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:14,176 | INFO     | [job] queue monitor thread has finished
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:17,333 | INFO     | [data] queue_monitor thread has finished
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:18,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139779858028352)>', '<ExcThread(monitor, started 139779266029312)>']
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:18,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:18,846 | INFO     | [monitor] control thread has ended
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,574 | INFO     | all workflow threads have been joined
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,574 | INFO     | end of generic workflow (traces error code: 0)
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,574 | INFO     | traces error code: 0
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,824 [wrapper] ==== pilot stdout END ====
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,828 [wrapper] ==== wrapper stdout RESUME ====
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,833 [wrapper] pilotpid: 6022
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,838 [wrapper] Pilot exit status: 0
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,921 [wrapper] pandaids: 6244921311
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,954 [wrapper] cleanup supervisor_pilot 16001 6023
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,965 [wrapper] Test setup, not cleaning
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,970 [wrapper] ==== wrapper stdout END ====
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,976 [wrapper] ==== wrapper stderr END ====
2024-06-29 00:32:28 (2156): Guest Log: 2024-06-29 00:32:23,986 [wrapper] apfmon messages muted
2024-06-29 00:32:28 (2156): Guest Log:  *** Error codes and diagnostics ***
2024-06-29 00:32:28 (2156): Guest Log:     "exeErrorCode": 0,
2024-06-29 00:32:28 (2156): Guest Log:     "exeErrorDiag": "",
2024-06-29 00:32:28 (2156): Guest Log:     "pilotErrorCode": 0,
2024-06-29 00:32:28 (2156): Guest Log:     "pilotErrorDiag": "",
2024-06-29 00:32:28 (2156): Guest Log:  *** Listing of results directory ***
2024-06-29 00:32:28 (2156): Guest Log: total 353020
2024-06-29 00:32:28 (2156): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 26 11:46 pilot3.tar.gz
2024-06-29 00:32:28 (2156): Guest Log: -rwx------. 1 atlas atlas     32220 Jun 26 12:00 runpilot2-wrapper.sh
2024-06-29 00:32:28 (2156): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 26 12:00 queuedata.json
2024-06-29 00:32:28 (2156): Guest Log: -rwxr-xr-x. 1 atlas atlas     10730 Jun 28 09:07 init_data.xml
2024-06-29 00:32:28 (2156): Guest Log: -rwxr-xr-x. 1 atlas atlas    482511 Jun 28 09:07 input.tar.gz
2024-06-29 00:32:28 (2156): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 28 09:07 start_atlas.sh
2024-06-29 00:32:28 (2156): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 28 09:07 EVNT.38776210._001023.pool.root.1 -> /data/./ATLAS.root_0
2024-06-29 00:32:28 (2156): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 28 09:09 pandaJob.out
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas       424 Jun 28 09:09 setup.sh.local
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas   1036930 Jun 28 09:10 agis_schedconf.cvmfs.json
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas   1321378 Jun 28 09:10 cric_ddmendpoints.json
2024-06-29 00:32:28 (2156): Guest Log: drwx------. 4 atlas atlas      4096 Jun 28 09:10 pilot3
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas 344297590 Jun 29 00:31 HITS.38921013._055506.pool.root.1
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas        95 Jun 29 00:31 pilot_heartbeat.json
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas      1029 Jun 29 00:31 memory_monitor_summary.json
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas         0 Jun 29 00:31 agis_ddmendpoints.agis.ALL.json
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas    740211 Jun 29 00:32 log.38921013._055506.job.log.tgz.1
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas      7732 Jun 29 00:32 heartbeat.json
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 29 00:32 pilotlog.txt
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas   6116283 Jun 29 00:32 log.38921013._055506.job.log.1
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas       357 Jun 29 00:32 output.list
2024-06-29 00:32:28 (2156): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 29 00:32 runtime_log
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas   6871040 Jun 29 00:32 result.tar.gz
2024-06-29 00:32:28 (2156): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Jun 29 00:32 runtime_log.err
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas       652 Jun 29 00:32 3D3KDmJVgg5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmoXoKDmNH9x1n.diag
2024-06-29 00:32:28 (2156): Guest Log: Looking for outputfile HITS.38921013._055506.pool.root.1
2024-06-29 00:32:28 (2156): Guest Log: HITS file was successfully produced
2024-06-29 00:32:28 (2156): Guest Log: -rw-------. 1 atlas atlas 344297590 Jun 29 00:31 /home/atlas/RunAtlas/HITS.38921013._055506.pool.root.1
2024-06-29 00:32:29 (2156): Guest Log: Successfully finished the ATLAS job!
2024-06-29 00:32:29 (2156): Guest Log: Copying the results back to the shared directory!
2024-06-29 00:32:29 (2156): Guest Log:  *** Contents of shared directory: ***
2024-06-29 00:32:30 (2156): Guest Log: total 872258
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root 541510904 Jun 28 06:03 ATLAS.root_0
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root 344297590 Jun 28 21:32 HITS.pool.root.1
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root     10730 Jun 28 06:03 init_data.xml
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root    482511 Jun 26 12:01 input.tar.gz
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root   6871040 Jun 28 21:32 result.tar.gz
2024-06-29 00:32:30 (2156): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 26 12:00 start_atlas.sh
2024-06-29 00:32:30 (2156): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-29 00:32:30 (2156): VM Completion File Detected.
2024-06-29 00:32:30 (2156): Powering off VM.
2024-06-29 00:32:30 (2156): Successfully stopped VM.
2024-06-29 00:32:30 (2156): Deregistering VM. (boinc_63c2fb0a9bb1364b, slot#0)
2024-06-29 00:32:30 (2156): Removing network bandwidth throttle group from VM.
2024-06-29 00:32:31 (2156): Removing VM from VirtualBox.
00:32:36 (2156): called boinc_finish(0)

</stderr_txt>
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