Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:04:15 (487121): wrapper (7.7.26015): starting
13:04:15 (487121): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 13:04:15] Arguments: --nthreads 4
[2024-06-27 13:04:15] Threads: 4
[2024-06-27 13:04:15] Checking for CVMFS
[2024-06-27 13:04:15] No cvmfs_config command found, will try listing directly
[2024-06-27 13:04:15] CVMFS is ok
[2024-06-27 13:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 13:04:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 13:04:15] Further information can be found at the LHC@home message board.
[2024-06-27 13:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 13:04:15] Checking for apptainer binary...
[2024-06-27 13:04:15] which: no apptainer in ((null))
[2024-06-27 13:04:15] apptainer is not installed, using version from CVMFS
[2024-06-27 13:04:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 13:04:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2024-06-27 13:04:16] apptainer works
[2024-06-27 13:04:16] Set ATHENA_PROC_NUMBER=4
[2024-06-27 13:04:16] Set ATHENA_CORE_NUMBER=4
[2024-06-27 13:04:16] Starting ATLAS job with PandaID=6244375774
[2024-06-27 13:04:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:08:56 (669383): wrapper (7.7.26015): starting
17:08:56 (669383): wrapper: running run_atlas (--nthreads 4)
[2024-06-27 17:08:56] Arguments: --nthreads 4
[2024-06-27 17:08:56] Threads: 4
[2024-06-27 17:08:56] This job has been restarted, cleaning up previous attempt
[2024-06-27 17:08:56] Checking for CVMFS
[2024-06-27 17:08:56] No cvmfs_config command found, will try listing directly
[2024-06-27 17:08:56] CVMFS is ok
[2024-06-27 17:08:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-27 17:08:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-27 17:08:56] Further information can be found at the LHC@home message board.
[2024-06-27 17:08:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-27 17:08:56] Checking for apptainer binary...
[2024-06-27 17:08:56] which: no apptainer in ((null))
[2024-06-27 17:08:56] apptainer is not installed, using version from CVMFS
[2024-06-27 17:08:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-27 17:08:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2024-06-27 17:08:57] apptainer works
[2024-06-27 17:08:57] Set ATHENA_PROC_NUMBER=4
[2024-06-27 17:08:57] Set ATHENA_CORE_NUMBER=4
[2024-06-27 17:08:57] Starting ATLAS job with PandaID=6244375774
[2024-06-27 17:08:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-28 01:12:09]  *** The last 200 lines of the pilot log: ***
[2024-06-28 01:12:09] 2024-06-27 23:11:52,719 | INFO     | -- intersect: -4836102933.708606
[2024-06-28 01:12:09] 2024-06-27 23:11:52,719 | INFO     | intersect: -4836102933.708606
[2024-06-28 01:12:09] 2024-06-27 23:11:52,720 | INFO     | chi2: 5.060442294539671
[2024-06-28 01:12:09] 2024-06-27 23:11:52,720 | INFO     | model: linear, x: [1719500969.0, 1719501030.0, 1719501091.0, 1719501152.0, 1719501213.0, 1719501274.0, 1719501335.0, 1719501396.0, 1719501457.0, 1719501518.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,721 | INFO     | sum of square deviations: 32193636177.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,724 | INFO     | sum of deviations: 124293798829.49997
[2024-06-28 01:12:09] 2024-06-27 23:11:52,724 | INFO     | mean x: 1719515273.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,724 | INFO     | mean y: 2398297.9723404255
[2024-06-28 01:12:09] 2024-06-27 23:11:52,725 | INFO     | -- intersect: -6636338758.950518
[2024-06-28 01:12:09] 2024-06-27 23:11:52,725 | INFO     | intersect: -6636338758.950518
[2024-06-28 01:12:09] 2024-06-27 23:11:52,725 | INFO     | chi2: 4.31786415351368
[2024-06-28 01:12:09] 2024-06-27 23:11:52,725 | INFO     | current chi2=4.31786415351368 (change=14.674174663097117 %)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,725 | INFO     | right removable region: 469
[2024-06-28 01:12:09] 2024-06-27 23:11:52,726 | INFO     | model: linear, x: [1719501274.0, 1719501335.0, 1719501396.0, 1719501457.0, 1719501518.0, 1719501579.0, 1719501640.0, 1719501701.0, 1719501762.0, 1719501823.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,726 | INFO     | sum of square deviations: 32193636177.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | sum of deviations: -19604305050.000004
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | mean x: 1719515578.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | mean y: 2410405.744680851
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | -- intersect: 1049508899.1637295
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | intersect: 1049508899.1637295
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | chi2: 2.6526635310687983
[2024-06-28 01:12:09] 2024-06-27 23:11:52,730 | INFO     | current chi2=2.6526635310687983 (change=47.58040154057125 %)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,731 | INFO     | model: linear, x: [1719501579.0, 1719501640.0, 1719501701.0, 1719501762.0, 1719501823.0, 1719501884.0, 1719501945.0, 1719502006.0, 1719502067.0, 1719502128.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,731 | INFO     | sum of square deviations: 31177068280.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | sum of deviations: -110973036283.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | mean x: 1719515731.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | mean y: 2424112.569892473
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | -- intersect: 6122944486.445542
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | intersect: 6122944486.445542
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | chi2: 1.1826246991559828
[2024-06-28 01:12:09] 2024-06-27 23:11:52,735 | INFO     | current chi2=1.1826246991559828 (change=55.41746304027162 %)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,736 | INFO     | model: linear, x: [1719501884.0, 1719501945.0, 1719502006.0, 1719502067.0, 1719502128.0, 1719502189.0, 1719502250.0, 1719502311.0, 1719502372.0, 1719502433.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,736 | INFO     | sum of square deviations: 30182128695.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,739 | INFO     | sum of deviations: -143071269253.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | mean x: 1719515883.5
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | mean y: 2429008.402173913
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | -- intersect: 8153388884.027289
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | intersect: 8153388884.027289
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | chi2: 0.825065244293828
[2024-06-28 01:12:09] 2024-06-27 23:11:52,740 | INFO     | current chi2=0.825065244293828 (change=30.234397701767797 %)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,741 | INFO     | model: linear, x: [1719502189.0, 1719502250.0, 1719502311.0, 1719502372.0, 1719502433.0, 1719502494.0, 1719502555.0, 1719502616.0, 1719502677.0, 1719502738.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,741 | INFO     | sum of square deviations: 29208584860.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,744 | INFO     | sum of deviations: -149308613956.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,744 | INFO     | mean x: 1719516036.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,744 | INFO     | mean y: 2429981.4131868132
[2024-06-28 01:12:09] 2024-06-27 23:11:52,744 | INFO     | -- intersect: 8792262054.444178
[2024-06-28 01:12:09] 2024-06-27 23:11:52,745 | INFO     | intersect: 8792262054.444178
[2024-06-28 01:12:09] 2024-06-27 23:11:52,745 | INFO     | chi2: 0.8031919176886094
[2024-06-28 01:12:09] 2024-06-27 23:11:52,745 | INFO     | current chi2=0.8031919176886094 (change=2.6511026560014552 %)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,745 | INFO     | left removable region: 40
[2024-06-28 01:12:09] 2024-06-27 23:11:52,746 | INFO     | model: linear, x: [1719503409.0, 1719503470.0, 1719503531.0, 1719503592.0, 1719503653.0, 1719503714.0, 1719503775.0, 1719503836.0, 1719503897.0, 1719503958.0, 1719
[2024-06-28 01:12:09] 2024-06-27 23:11:52,746 | INFO     | sum of square deviations: 24482059030.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,749 | INFO     | sum of deviations: -106692620411.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,749 | INFO     | mean x: 1719516463.0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,749 | INFO     | mean y: 2433455.9906759905
[2024-06-28 01:12:09] 2024-06-27 23:11:52,749 | INFO     | -- intersect: 7496072657.355037
[2024-06-28 01:12:09] 2024-06-27 23:11:52,749 | INFO     | intersect: 7496072657.355037
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | chi2: 0.03828465565917985
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | -- intersect: 7496072657.355037
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | current memory leak: -4.36 B/s (using 429 data points, chi2=0.04)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | ..............................
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | . Timing measurements:
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | . get job = 0 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | . initial setup = 1 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,750 | INFO     | . payload setup = 5 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,751 | INFO     | . stage-in = 0 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,751 | INFO     | . payload execution = 28917 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,751 | INFO     | . stage-out = 0 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,751 | INFO     | . log creation = 0 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,751 | INFO     | ..............................
[2024-06-28 01:12:09] 2024-06-27 23:11:52,808 | INFO     | 
[2024-06-28 01:12:09] 2024-06-27 23:11:52,808 | INFO     | job summary report
[2024-06-28 01:12:09] 2024-06-27 23:11:52,808 | INFO     | --------------------------------------------------
[2024-06-28 01:12:09] 2024-06-27 23:11:52,808 | INFO     | PanDA job id: 6244375774
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | task id: 38921013
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | errors: (none)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | pilot state: finished 
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | transexitcode: 0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | exeerrorcode: 0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | exeerrordiag: 
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | exitcode: 0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | exitmsg: OK
[2024-06-28 01:12:09] 2024-06-27 23:11:52,809 | INFO     | cpuconsumptiontime: 111691 s
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | nevents: 400
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | neventsw: 0
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | pid: 680200
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | pgrp: 680200
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | corecount: 4
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | event service: False
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | sizes: {0: 2386869, 1: 2387068, 4: 2387274, 11: 2387302, 28945: 2425178, 28946: 2425177, 28947: 2434399, 28952: 2434343}
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | --------------------------------------------------
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | 
[2024-06-28 01:12:09] 2024-06-27 23:11:52,810 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/1
[2024-06-28 01:12:09] 2024-06-27 23:11:52,831 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,833 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-28 01:12:09] 2024-06-27 23:11:52,834 | INFO     | job 6244375774 has completed (purged errors)
[2024-06-28 01:12:09] 2024-06-27 23:11:52,834 | INFO     | overall cleanup function is called
[2024-06-28 01:12:09] 2024-06-27 23:11:53,841 | INFO     | --- collectZombieJob: --- 10, [680200]
[2024-06-28 01:12:09] 2024-06-27 23:11:53,841 | INFO     | zombie collector waiting for pid 680200
[2024-06-28 01:12:09] 2024-06-27 23:11:53,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-28 01:12:09] 2024-06-27 23:11:54,844 | INFO     | collected zombie processes
[2024-06-28 01:12:09] 2024-06-27 23:11:54,845 | INFO     | will now attempt to kill all subprocesses of pid=680200
[2024-06-28 01:12:09] 2024-06-27 23:11:54,945 | INFO     | process IDs to be killed: [680200] (in reverse order)
[2024-06-28 01:12:09] 2024-06-27 23:11:55,011 | WARNING  | found no corresponding commands to process id(s)
[2024-06-28 01:12:09] 2024-06-27 23:11:55,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-28 01:12:09] 2024-06-27 23:11:55,014 | INFO     | did not find any defunct processes belonging to 680200
[2024-06-28 01:12:09] 2024-06-27 23:11:55,017 | INFO     | did not find any defunct processes belonging to 680200
[2024-06-28 01:12:09] 2024-06-27 23:11:55,017 | INFO     | ready for new job
[2024-06-28 01:12:09] 2024-06-27 23:11:55,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-28 01:12:09] 2024-06-27 23:11:55,019 | INFO     | *************************************
[2024-06-28 01:12:09] 2024-06-27 23:11:55,020 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-28 01:12:09] 2024-06-27 23:11:55,020 | INFO     | *************************************
[2024-06-28 01:12:09] 2024-06-27 23:11:55,020 | INFO     | 
[2024-06-28 01:12:09] 2024-06-27 23:11:55,021 | INFO     | architecture information:
[2024-06-28 01:12:09] 2024-06-27 23:11:55,021 | INFO     | executing command: cat /etc/os-release
[2024-06-28 01:12:09] 2024-06-27 23:11:55,034 | INFO     | cat /etc/os-release:
[2024-06-28 01:12:09] NAME="CentOS Linux"
[2024-06-28 01:12:09] VERSION="7 (Core)"
[2024-06-28 01:12:09] ID="centos"
[2024-06-28 01:12:09] ID_LIKE="rhel fedora"
[2024-06-28 01:12:09] VERSION_ID="7"
[2024-06-28 01:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-28 01:12:09] ANSI_COLOR="0;31"
[2024-06-28 01:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-28 01:12:09] HOME_URL="https://www.centos.org/"
[2024-06-28 01:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-28 01:12:09] 
[2024-06-28 01:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-28 01:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-28 01:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-28 01:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-28 01:12:09] 
[2024-06-28 01:12:09] 2024-06-27 23:11:55,034 | INFO     | *************************************
[2024-06-28 01:12:09] 2024-06-27 23:11:55,537 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/1
[2024-06-28 01:12:09] 2024-06-27 23:11:55,557 | INFO     | sufficient remaining disk space (1693527834624 B)
[2024-06-28 01:12:09] 2024-06-27 23:11:55,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-28 01:12:09] 2024-06-27 23:11:55,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-28 01:12:09] 2024-06-27 23:11:55,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-28 01:12:09] 2024-06-27 23:11:55,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-28 01:12:09] 2024-06-27 23:11:55,559 | INFO     | aborting loop
[2024-06-28 01:12:09] 2024-06-27 23:11:55,728 | INFO     | all data control threads have been joined
[2024-06-28 01:12:09] 2024-06-27 23:11:55,770 | INFO     | found 0 job(s) in 20 queues
[2024-06-28 01:12:09] 2024-06-27 23:11:55,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-28 01:12:09] 2024-06-27 23:11:55,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-28 01:12:09] 2024-06-27 23:11:56,229 | INFO     | all job control threads have been joined
[2024-06-28 01:12:09] 2024-06-27 23:11:56,563 | INFO     | [job] job monitor thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:56,564 | INFO     | [job] retrieve thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:56,730 | INFO     | [data] control thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:56,735 | INFO     | [job] create_data_payload thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:56,804 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:56,901 | INFO     | [payload] validate_post thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,042 | INFO     | all payload control threads have been joined
[2024-06-28 01:12:09] 2024-06-27 23:11:57,232 | INFO     | [job] control thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,475 | INFO     | [data] copytool_in thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,505 | INFO     | [payload] failed_post thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,564 | INFO     | [data] copytool_out thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,715 | INFO     | [payload] execute_payloads thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:57,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-28 01:12:09] 2024-06-27 23:11:57,904 | INFO     | [job] validate thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:58,017 | INFO     | [payload] validate_pre thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:58,048 | INFO     | [payload] control thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:11:58,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-28 01:12:09] 2024-06-27 23:11:58,825 | INFO     | [job] queue monitor thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:12:02,212 | INFO     | [data] queue_monitor thread has finished
[2024-06-28 01:12:09] 2024-06-27 23:12:03,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47965798192192)>', '<ExcThread(monitor, started 47965980067584)>']
[2024-06-28 01:12:09] 2024-06-27 23:12:03,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-28 01:12:09] 2024-06-27 23:12:03,808 | INFO     | [monitor] control thread has ended
[2024-06-28 01:12:09] 2024-06-27 23:12:08,386 | INFO     | all workflow threads have been joined
[2024-06-28 01:12:09] 2024-06-27 23:12:08,387 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-28 01:12:09] 2024-06-27 23:12:08,387 | INFO     | traces error code: 0
[2024-06-28 01:12:09] 2024-06-27 23:12:08,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-28 01:12:09] 2024-06-27 23:12:08,499 [wrapper] ==== pilot stdout END ====
[2024-06-28 01:12:09] 2024-06-27 23:12:08,502 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-28 01:12:09] 2024-06-27 23:12:08,505 [wrapper] pilotpid: 673397
[2024-06-28 01:12:09] 2024-06-27 23:12:08,507 [wrapper] Pilot exit status: 0
[2024-06-28 01:12:09] 2024-06-27 23:12:08,517 [wrapper] pandaids: 6244375774 6244375774
[2024-06-28 01:12:09] 2024-06-27 23:12:08,560 [wrapper] cleanup supervisor_pilot 1158521 673398
[2024-06-28 01:12:09] 2024-06-27 23:12:08,563 [wrapper] Test setup, not cleaning
[2024-06-28 01:12:09] 2024-06-27 23:12:08,565 [wrapper] ==== wrapper stdout END ====
[2024-06-28 01:12:09] 2024-06-27 23:12:08,568 [wrapper] ==== wrapper stderr END ====
[2024-06-28 01:12:09] 2024-06-27 23:12:08,573 [wrapper] apfmon messages muted
[2024-06-28 01:12:09]  *** Error codes and diagnostics ***
[2024-06-28 01:12:09]     "exeErrorCode": 0,
[2024-06-28 01:12:09]     "exeErrorDiag": "",
[2024-06-28 01:12:09]     "pilotErrorCode": 0,
[2024-06-28 01:12:09]     "pilotErrorDiag": "",
[2024-06-28 01:12:09]  *** Listing of results directory ***
[2024-06-28 01:12:09] total 1394652
[2024-06-28 01:12:09] drwx------ 4 boinc boinc      4096 Jun 12 12:00 pilot3
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc    469766 Jun 26 03:49 pilot3.tar.gz
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc      5654 Jun 26 03:51 queuedata.json
[2024-06-28 01:12:09] -rwx------ 1 boinc boinc     32220 Jun 26 03:52 runpilot2-wrapper.sh
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc       100 Jun 27 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-28 01:12:09] -rwxr-xr-x 1 boinc boinc      7986 Jun 27 13:04 run_atlas
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc       105 Jun 27 13:04 job.xml
[2024-06-28 01:12:09] -rw-r--r-- 3 boinc boinc 540431790 Jun 27 13:04 EVNT.38776210._000384.pool.root.1
[2024-06-28 01:12:09] -rw-r--r-- 3 boinc boinc 540431790 Jun 27 13:04 ATLAS.root_0
[2024-06-28 01:12:09] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:04 start_atlas.sh
[2024-06-28 01:12:09] drwxrwx--x 2 boinc boinc      4096 Jun 27 13:04 shared
[2024-06-28 01:12:09] -rw-r--r-- 2 boinc boinc    482521 Jun 27 13:04 input.tar.gz
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc         0 Jun 27 13:04 boinc_lockfile
[2024-06-28 01:12:09] -rw------- 1 boinc boinc   1321363 Jun 27 13:04 cric_ddmendpoints.json
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc      2645 Jun 27 17:08 pandaJob.out
[2024-06-28 01:12:09] -rw------- 1 boinc boinc       424 Jun 27 17:08 setup.sh.local
[2024-06-28 01:12:09] -rw------- 1 boinc boinc   1034827 Jun 27 17:09 agis_schedconf.cvmfs.json
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc      6464 Jun 27 19:06 init_data.xml
[2024-06-28 01:12:09] -rw------- 1 boinc boinc 335798786 Jun 28 01:10 HITS.38921013._055405.pool.root.1
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc       533 Jun 28 01:10 boinc_task_state.xml
[2024-06-28 01:12:09] -rw------- 1 boinc boinc        97 Jun 28 01:11 pilot_heartbeat.json
[2024-06-28 01:12:09] -rw------- 1 boinc boinc      1042 Jun 28 01:11 memory_monitor_summary.json
[2024-06-28 01:12:09] -rw------- 1 boinc boinc         0 Jun 28 01:11 agis_ddmendpoints.agis.ALL.json
[2024-06-28 01:12:09] -rw------- 1 boinc boinc    518041 Jun 28 01:11 log.38921013._055405.job.log.tgz.1
[2024-06-28 01:12:09] -rw------- 1 boinc boinc      7767 Jun 28 01:11 heartbeat.json
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc        29 Jun 28 01:11 wrapper_checkpoint.txt
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc      8192 Jun 28 01:11 boinc_mmap_file
[2024-06-28 01:12:09] -rw------- 1 boinc boinc      4222 Jun 28 01:12 pilotlog.txt
[2024-06-28 01:12:09] -rw------- 1 boinc boinc   3433079 Jun 28 01:12 log.38921013._055405.job.log.1
[2024-06-28 01:12:09] -rw------- 1 boinc boinc       357 Jun 28 01:12 output.list
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc       620 Jun 28 01:12 runtime_log
[2024-06-28 01:12:09] -rw------- 1 boinc boinc   3973120 Jun 28 01:12 result.tar.gz
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc     11487 Jun 28 01:12 runtime_log.err
[2024-06-28 01:12:09] -rw------- 1 boinc boinc       772 Jun 28 01:12 SnQODmq0Wg5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmp6YKDm7c13Uo.diag
[2024-06-28 01:12:09] -rw-r--r-- 1 boinc boinc     23185 Jun 28 01:12 stderr.txt
[2024-06-28 01:12:09] HITS file was successfully produced:
[2024-06-28 01:12:09] -rw------- 1 boinc boinc 335798786 Jun 28 01:10 shared/HITS.pool.root.1
[2024-06-28 01:12:09]  *** Contents of shared directory: ***
[2024-06-28 01:12:09] total 860080
[2024-06-28 01:12:09] -rw-r--r-- 3 boinc boinc 540431790 Jun 27 13:04 ATLAS.root_0
[2024-06-28 01:12:09] -rw-r--r-- 2 boinc boinc     17537 Jun 27 13:04 start_atlas.sh
[2024-06-28 01:12:09] -rw-r--r-- 2 boinc boinc    482521 Jun 27 13:04 input.tar.gz
[2024-06-28 01:12:09] -rw------- 1 boinc boinc 335798786 Jun 28 01:10 HITS.pool.root.1
[2024-06-28 01:12:09] -rw------- 1 boinc boinc   3973120 Jun 28 01:12 result.tar.gz
01:12:10 (669383): run_atlas exited; CPU time 111487.352355
01:12:10 (669383): called boinc_finish(0)

</stderr_txt>
]]>

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