Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:59:14 (1200804): wrapper (7.7.26015): starting
07:59:14 (1200804): wrapper: running run_atlas (--nthreads 8)
[2024-06-23 07:59:14] Arguments: --nthreads 8
[2024-06-23 07:59:14] Threads: 8
[2024-06-23 07:59:14] Checking for CVMFS
[2024-06-23 07:59:14] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-23 07:59:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-23 07:59:14] Running cvmfs_config stat atlas.cern.ch
[2024-06-23 07:59:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-23 07:59:15] 2.11.2.0 2197843 15264 83800 134201 2 1 13314373 18432001 1 130560 2 48719723 99.981 3445377 23650 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-06-23 07:59:15] CVMFS is ok
[2024-06-23 07:59:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-23 07:59:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-23 07:59:15] Further information can be found at the LHC@home message board.
[2024-06-23 07:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-23 07:59:15] Checking for apptainer binary...
[2024-06-23 07:59:15] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-23 07:59:15] Running /usr/bin/apptainer --version
[2024-06-23 07:59:15] apptainer version 1.2.4-1.el7
[2024-06-23 07:59:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-23 07:59:15] gc-9-36.aglt2.org
[2024-06-23 07:59:15] apptainer works
[2024-06-23 07:59:15] Set ATHENA_PROC_NUMBER=8
[2024-06-23 07:59:15] Set ATHENA_CORE_NUMBER=8
[2024-06-23 07:59:15] Starting ATLAS job with PandaID=6242098759
[2024-06-23 07:59:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-23 08:16:23]  *** The last 200 lines of the pilot log: ***
[2024-06-23 08:16:23]  ddm_activity=['write_lan', 'write_wan']
[2024-06-23 08:16:23]  ddmendpoint=NDGF-T1_DATADISK
[2024-06-23 08:16:23]  direct_access_lan=False
[2024-06-23 08:16:23]  direct_access_wan=False
[2024-06-23 08:16:23]  domain=
[2024-06-23 08:16:23]  filesize=157661
[2024-06-23 08:16:23]  filetype=log
[2024-06-23 08:16:23]  guid=28c74d31-1aef-469f-bac8-1c50e6b58189
[2024-06-23 08:16:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-23 08:16:23]  is_tar=False
[2024-06-23 08:16:23]  lfn=e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz
[2024-06-23 08:16:23]  mtime=0
[2024-06-23 08:16:23]  protocol_id=None
[2024-06-23 08:16:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-23 08:16:23]  replicas=None
[2024-06-23 08:16:23]  scope=hc_test
[2024-06-23 08:16:23]  status=None
[2024-06-23 08:16:23]  status_code=0
[2024-06-23 08:16:23]  storage_token=
[2024-06-23 08:16:23]  surl=/data/boinchome/slots/0/PanDA_Pilot-6242098759/e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz
[2024-06-23 08:16:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/9a/51/e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz
[2024-06-23 08:16:23]  workdir=None
[2024-06-23 08:16:23] ]
[2024-06-23 08:16:23] 2024-06-23 12:15:56,912 | INFO     | transferring file e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz from /data/boinchome/slots/0/PanDA_Pilot-6242098759/e559ee0a-88c8-4852-bab9-1e230288be1f
[2024-06-23 08:16:23] 2024-06-23 12:15:56,912 | INFO     | executing command: /usr/bin/env mv /data/boinchome/slots/0/PanDA_Pilot-6242098759/e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz /data/boinchome/slots/0/
[2024-06-23 08:16:23] 2024-06-23 12:15:56,930 | INFO     | adding to output.list: e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/9a/51/e559ee0a-88c8-
[2024-06-23 08:16:23] 2024-06-23 12:15:56,931 | INFO     | summary of transferred files:
[2024-06-23 08:16:23] 2024-06-23 12:15:56,931 | INFO     |  -- lfn=e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz, status_code=0, status=transferred
[2024-06-23 08:16:23] 2024-06-23 12:15:56,931 | INFO     | stage-out finished correctly
[2024-06-23 08:16:23] 2024-06-23 12:15:56,968 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-23 08:16:23] 2024-06-23 12:15:59,266 | INFO     | job 6242098759 has state=finished
[2024-06-23 08:16:23] 2024-06-23 12:15:59,266 | INFO     | preparing for final server update for job 6242098759 in state='finished'
[2024-06-23 08:16:23] 2024-06-23 12:15:59,267 | INFO     | this job has now completed (state=finished)
[2024-06-23 08:16:23] 2024-06-23 12:15:59,267 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-23 08:16:23] 2024-06-23 12:15:59,267 | INFO     | job 6242098759 has finished - writing final server update
[2024-06-23 08:16:23] 2024-06-23 12:15:59,267 | INFO     | total number of processed events: 2 (read)
[2024-06-23 08:16:23] 2024-06-23 12:15:59,270 | INFO     | executing command: lscpu
[2024-06-23 08:16:23] 2024-06-23 12:15:59,304 | INFO     | found 24 cores (12 cores per socket, 2 sockets)
[2024-06-23 08:16:23] 2024-06-23 12:15:59,305 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-23 08:16:23] 2024-06-23 12:15:59,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-23 08:16:23] 2024-06-23 12:16:02,251 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-23 08:16:23] 2024-06-23 12:16:02,251 | INFO     | using path: /data/boinchome/slots/0/PanDA_Pilot-6242098759/memory_monitor_summary.json (trf name=prmon)
[2024-06-23 08:16:23] 2024-06-23 12:16:02,255 | INFO     | extracted standard info from prmon json
[2024-06-23 08:16:23] 2024-06-23 12:16:02,255 | INFO     | extracted standard memory fields from prmon json
[2024-06-23 08:16:23] 2024-06-23 12:16:02,255 | WARNING  | GPU info not found in prmon json
[2024-06-23 08:16:23] 2024-06-23 12:16:02,256 | INFO     | fitting pss+swap vs Time
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | model: linear, x: [1719144292.0, 1719144353.0, 1719144414.0, 1719144475.0, 1719144536.0, 1719144597.0, 1719144658.0, 1719144719.0, 1719144780.0], y: [917471.0, 101
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | sum of square deviations: 223260.0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | sum of deviations: 231119423.0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | mean x: 1719144536.0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | mean y: 1131049.3333333333
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | -- intersect: -1779662459445.707
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | intersect: -1779662459445.707
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | chi2: 0.062118201391526615
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | -- intersect: -1779662459445.707
[2024-06-23 08:16:23] 2024-06-23 12:16:02,257 | INFO     | current memory leak: 1035.20 B/s (using 9 data points, chi2=0.06)
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | ..............................
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . Timing measurements:
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . get job = 0 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . initial setup = 1 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . payload setup = 6 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . stage-in = 0 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . payload execution = 969 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . stage-out = 0 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | . log creation = 0 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,258 | INFO     | ..............................
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | 
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | job summary report
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | --------------------------------------------------
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | PanDA job id: 6242098759
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | task id: NULL
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | errors: (none)
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | pilot state: finished 
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | transexitcode: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | exeerrorcode: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | exeerrordiag: 
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | exitcode: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | exitmsg: OK
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | cpuconsumptiontime: 321 s
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | nevents: 2
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | neventsw: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | pid: 1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | pgrp: 1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | corecount: 8
[2024-06-23 08:16:23] 2024-06-23 12:16:02,302 | INFO     | event service: False
[2024-06-23 08:16:23] 2024-06-23 12:16:02,303 | INFO     | sizes: {0: 2386792, 3: 2386998, 11: 2387026, 979: 2418468, 985: 2418634}
[2024-06-23 08:16:23] 2024-06-23 12:16:02,303 | INFO     | --------------------------------------------------
[2024-06-23 08:16:23] 2024-06-23 12:16:02,303 | INFO     | 
[2024-06-23 08:16:23] 2024-06-23 12:16:02,303 | INFO     | executing command: ls -lF /data/boinchome/slots/0
[2024-06-23 08:16:23] 2024-06-23 12:16:02,323 | WARNING  | process 1213934 is no longer using CPU - aborting
[2024-06-23 08:16:23] 2024-06-23 12:16:02,323 | INFO     | aborting job monitoring since job object (job id=6242098759) has expired
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | job 6242098759 has completed (purged errors)
[2024-06-23 08:16:23] 2024-06-23 12:16:02,338 | INFO     | overall cleanup function is called
[2024-06-23 08:16:23] 2024-06-23 12:16:03,344 | INFO     | --- collectZombieJob: --- 10, [1213934]
[2024-06-23 08:16:23] 2024-06-23 12:16:03,344 | INFO     | zombie collector waiting for pid 1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:03,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-23 08:16:23] 2024-06-23 12:16:04,349 | INFO     | collected zombie processes
[2024-06-23 08:16:23] 2024-06-23 12:16:04,349 | INFO     | will now attempt to kill all subprocesses of pid=1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:04,415 | INFO     | process IDs to be killed: [1213934] (in reverse order)
[2024-06-23 08:16:23] 2024-06-23 12:16:04,472 | WARNING  | found no corresponding commands to process id(s)
[2024-06-23 08:16:23] 2024-06-23 12:16:04,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-23 08:16:23] 2024-06-23 12:16:04,477 | INFO     | did not find any defunct processes belonging to 1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:04,480 | INFO     | did not find any defunct processes belonging to 1213934
[2024-06-23 08:16:23] 2024-06-23 12:16:04,480 | INFO     | ready for new job
[2024-06-23 08:16:23] 2024-06-23 12:16:04,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-23 08:16:23] 2024-06-23 12:16:04,481 | INFO     | *************************************
[2024-06-23 08:16:23] 2024-06-23 12:16:04,481 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-23 08:16:23] 2024-06-23 12:16:04,481 | INFO     | *************************************
[2024-06-23 08:16:23] 2024-06-23 12:16:04,481 | INFO     | 
[2024-06-23 08:16:23] 2024-06-23 12:16:04,483 | INFO     | architecture information:
[2024-06-23 08:16:23] 2024-06-23 12:16:04,483 | INFO     | executing command: cat /etc/os-release
[2024-06-23 08:16:23] 2024-06-23 12:16:04,494 | INFO     | cat /etc/os-release:
[2024-06-23 08:16:23] NAME="CentOS Linux"
[2024-06-23 08:16:23] VERSION="7 (Core)"
[2024-06-23 08:16:23] ID="centos"
[2024-06-23 08:16:23] ID_LIKE="rhel fedora"
[2024-06-23 08:16:23] VERSION_ID="7"
[2024-06-23 08:16:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-23 08:16:23] ANSI_COLOR="0;31"
[2024-06-23 08:16:23] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-23 08:16:23] HOME_URL="https://www.centos.org/"
[2024-06-23 08:16:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-23 08:16:23] 
[2024-06-23 08:16:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-23 08:16:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-23 08:16:23] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-23 08:16:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-23 08:16:23] 
[2024-06-23 08:16:23] 2024-06-23 12:16:04,494 | INFO     | *************************************
[2024-06-23 08:16:23] 2024-06-23 12:16:04,997 | INFO     | executing command: df -mP /data/boinchome/slots/0
[2024-06-23 08:16:23] 2024-06-23 12:16:05,013 | INFO     | sufficient remaining disk space (913967153152 B)
[2024-06-23 08:16:23] 2024-06-23 12:16:05,013 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-23 08:16:23] 2024-06-23 12:16:05,014 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-23 08:16:23] 2024-06-23 12:16:05,014 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-23 08:16:23] 2024-06-23 12:16:05,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-23 08:16:23] 2024-06-23 12:16:05,014 | INFO     | found 0 job(s) in 20 queues
[2024-06-23 08:16:23] 2024-06-23 12:16:05,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-23 08:16:23] 2024-06-23 12:16:05,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-23 08:16:23] 2024-06-23 12:16:05,145 | INFO     | all job control threads have been joined
[2024-06-23 08:16:23] 2024-06-23 12:16:05,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-23 08:16:23] 2024-06-23 12:16:05,831 | INFO     | aborting loop
[2024-06-23 08:16:23] 2024-06-23 12:16:05,916 | INFO     | all payload control threads have been joined
[2024-06-23 08:16:23] 2024-06-23 12:16:05,975 | INFO     | all data control threads have been joined
[2024-06-23 08:16:23] 2024-06-23 12:16:06,019 | INFO     | [job] retrieve thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,135 | INFO     | [payload] failed_post thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,151 | INFO     | [job] control thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,597 | INFO     | [payload] execute_payloads thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,834 | INFO     | [job] job monitor thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,921 | INFO     | [payload] control thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:06,980 | INFO     | [data] control thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,020 | INFO     | [data] copytool_out thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,052 | INFO     | [job] validate thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,186 | INFO     | [data] copytool_in thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,194 | INFO     | [job] create_data_payload thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,239 | INFO     | [payload] validate_post thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,258 | INFO     | [payload] validate_pre thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:07,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-23 08:16:23] 2024-06-23 12:16:07,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-23 08:16:23] 2024-06-23 12:16:08,317 | INFO     | [job] queue monitor thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:11,533 | INFO     | [data] queue_monitor thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:15,902 | INFO     | job.realtimelogging is not enabled
[2024-06-23 08:16:23] 2024-06-23 12:16:16,907 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-23 08:16:23] 2024-06-23 12:16:17,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140224803403584)>', '<ExcThread(monitor, started 140224080365312)>']
[2024-06-23 08:16:23] 2024-06-23 12:16:18,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-23 08:16:23] 2024-06-23 12:16:18,076 | INFO     | [monitor] control thread has ended
[2024-06-23 08:16:23] 2024-06-23 12:16:22,808 | INFO     | all workflow threads have been joined
[2024-06-23 08:16:23] 2024-06-23 12:16:22,808 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-23 08:16:23] 2024-06-23 12:16:22,808 | INFO     | traces error code: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:22,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-23 08:16:23] 2024-06-23 12:16:22,883 [wrapper] ==== pilot stdout END ====
[2024-06-23 08:16:23] 2024-06-23 12:16:22,885 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-23 08:16:23] 2024-06-23 12:16:22,888 [wrapper] pilotpid: 1205648
[2024-06-23 08:16:23] 2024-06-23 12:16:22,889 [wrapper] Pilot exit status: 0
[2024-06-23 08:16:23] 2024-06-23 12:16:22,897 [wrapper] pandaids: 6242098759
[2024-06-23 08:16:23] 2024-06-23 12:16:22,951 [wrapper] cleanup supervisor_pilot 1277031 1205649
[2024-06-23 08:16:23] 2024-06-23 12:16:22,953 [wrapper] Test setup, not cleaning
[2024-06-23 08:16:23] 2024-06-23 12:16:22,955 [wrapper] ==== wrapper stdout END ====
[2024-06-23 08:16:23] 2024-06-23 12:16:22,957 [wrapper] ==== wrapper stderr END ====
[2024-06-23 08:16:23] 2024-06-23 12:16:22,961 [wrapper] apfmon messages muted
[2024-06-23 08:16:23]  *** Error codes and diagnostics ***
[2024-06-23 08:16:23]     "exeErrorCode": 0,
[2024-06-23 08:16:23]     "exeErrorDiag": "",
[2024-06-23 08:16:23]     "pilotErrorCode": 0,
[2024-06-23 08:16:23]     "pilotErrorDiag": "",
[2024-06-23 08:16:23]  *** Listing of results directory ***
[2024-06-23 08:16:23] total 43148
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas   469766 Jun 23 07:41 pilot3.tar.gz
[2024-06-23 08:16:23] -rwx------ 1 boincer umatlas    32308 Jun 23 07:58 runpilot2-wrapper.sh
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas     4409 Jun 23 07:58 queuedata.json
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas      100 Jun 23 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-23 08:16:23] -rwxr-xr-x 1 boincer umatlas     7986 Jun 23 07:59 run_atlas
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas      105 Jun 23 07:59 job.xml
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas 37498453 Jun 23 07:59 EVNT.04972714._000025.pool.root.1
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas    17614 Jun 23 07:59 start_atlas.sh
[2024-06-23 08:16:23] drwxrwx--x 2 boincer umatlas     4096 Jun 23 07:59 shared
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas   482535 Jun 23 07:59 input.tar.gz
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas        0 Jun 23 07:59 boinc_lockfile
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas     2774 Jun 23 07:59 pandaJob.out
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas      461 Jun 23 07:59 setup.sh.local
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1025352 Jun 23 07:59 agis_schedconf.cvmfs.json
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas        0 Jun 23 07:59 agis_ddmendpoints.agis.ALL.json
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1321363 Jun 23 07:59 cric_ddmendpoints.json
[2024-06-23 08:16:23] drwx------ 4 boincer umatlas     4096 Jun 23 07:59 pilot3
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas     9215 Jun 23 08:10 init_data.xml
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas       95 Jun 23 08:15 pilot_heartbeat.json
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1239586 Jun 23 08:15 output.1.e559ee0a-88c8-4852-bab9-1e230288be1f_25074.pool.root
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas     8192 Jun 23 08:15 boinc_mmap_file
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas       25 Jun 23 08:15 wrapper_checkpoint.txt
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas      525 Jun 23 08:15 boinc_task_state.xml
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas     1027 Jun 23 08:15 memory_monitor_summary.json
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas   157661 Jun 23 08:15 e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log.tgz
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas     8524 Jun 23 08:16 heartbeat.json
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas     4408 Jun 23 08:16 pilotlog.txt
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas   174737 Jun 23 08:16 e559ee0a-88c8-4852-bab9-1e230288be1f_25074.1.job.log
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas      464 Jun 23 08:16 output.list
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas      748 Jun 23 08:16 runtime_log
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1597440 Jun 23 08:16 result.tar.gz
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas    12375 Jun 23 08:16 runtime_log.err
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas      637 Jun 23 08:16 fn4KDm42af5n7Olcko1bjSoqABFKDmABFKDmOtvXDmQorKDmLpypgn.diag
[2024-06-23 08:16:23] -rw-r--r-- 1 boincer umatlas    20983 Jun 23 08:16 stderr.txt
[2024-06-23 08:16:23] HITS file was successfully produced:
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas 1239586 Jun 23 08:15 shared/HITS.pool.root.1
[2024-06-23 08:16:23]  *** Contents of shared directory: ***
[2024-06-23 08:16:23] total 39884
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas 37498453 Jun 23 07:59 ATLAS.root_0
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas    17614 Jun 23 07:59 start_atlas.sh
[2024-06-23 08:16:23] -rw-r--r-- 2 boincer umatlas   482535 Jun 23 07:59 input.tar.gz
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1239586 Jun 23 08:15 HITS.pool.root.1
[2024-06-23 08:16:23] -rw------- 1 boincer umatlas  1597440 Jun 23 08:16 result.tar.gz
08:16:25 (1200804): run_atlas exited; CPU time 309.526278
08:16:25 (1200804): called boinc_finish(0)

</stderr_txt>
]]>

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