Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:23:17 (86413): wrapper (7.7.26015): starting
17:23:17 (86413): wrapper: running run_atlas (--nthreads 8)
[2024-06-22 17:23:17] Arguments: --nthreads 8
[2024-06-22 17:23:17] Threads: 8
[2024-06-22 17:23:17] Checking for CVMFS
[2024-06-22 17:23:17] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-22 17:23:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-22 17:23:17] Running cvmfs_config stat atlas.cern.ch
[2024-06-22 17:23:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-22 17:23:17] 2.11.2.0 56809 17227 120784 134180 2 17 14715399 18432000 7107 130560 0 15016399 99.777 5511498 52740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-22 17:23:17] CVMFS is ok
[2024-06-22 17:23:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-22 17:23:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-22 17:23:17] Further information can be found at the LHC@home message board.
[2024-06-22 17:23:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 17:23:17] Checking for apptainer binary...
[2024-06-22 17:23:17] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-22 17:23:17] Running /usr/bin/apptainer --version
[2024-06-22 17:23:17] apptainer version 1.3.1-1.el7
[2024-06-22 17:23:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 17:23:18] c-212-19.aglt2.org
[2024-06-22 17:23:18] apptainer works
[2024-06-22 17:23:18] Set ATHENA_PROC_NUMBER=8
[2024-06-22 17:23:18] Set ATHENA_CORE_NUMBER=8
[2024-06-22 17:23:18] Starting ATLAS job with PandaID=6241685112
[2024-06-22 17:23:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 18:59:06]  *** The last 200 lines of the pilot log: ***
[2024-06-22 18:59:06]  filesize=310614
[2024-06-22 18:59:06]  filetype=log
[2024-06-22 18:59:06]  guid=296810da-cbe0-4d2e-8770-c8691227e142
[2024-06-22 18:59:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-22 18:59:06]  is_tar=False
[2024-06-22 18:59:06]  lfn=log.40024014._001869.job.log.tgz.1
[2024-06-22 18:59:06]  mtime=0
[2024-06-22 18:59:06]  protocol_id=None
[2024-06-22 18:59:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-22 18:59:06]  replicas=None
[2024-06-22 18:59:06]  scope=mc23_13p6TeV
[2024-06-22 18:59:06]  status=None
[2024-06-22 18:59:06]  status_code=0
[2024-06-22 18:59:06]  storage_token=
[2024-06-22 18:59:06]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6241685112/log.40024014._001869.job.log.tgz.1
[2024-06-22 18:59:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/02/log.40024014._001869.job.log.tgz.1
[2024-06-22 18:59:06]  workdir=None
[2024-06-22 18:59:06] ]
[2024-06-22 18:59:06] 2024-06-22 22:58:38,844 | INFO     | transferring file log.40024014._001869.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6241685112/log.40024014._001869.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-06-22 18:59:06] 2024-06-22 22:58:38,844 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6241685112/log.40024014._001869.job.log.tgz.1 /tmp/boinchome/slots/3/log.40024014._001869.job
[2024-06-22 18:59:06] 2024-06-22 22:58:38,862 | INFO     | adding to output.list: log.40024014._001869.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/02/log.40024014._001869.job.log.tg
[2024-06-22 18:59:06] 2024-06-22 22:58:38,862 | INFO     | summary of transferred files:
[2024-06-22 18:59:06] 2024-06-22 22:58:38,862 | INFO     |  -- lfn=log.40024014._001869.job.log.tgz.1, status_code=0, status=transferred
[2024-06-22 18:59:06] 2024-06-22 22:58:38,862 | INFO     | stage-out finished correctly
[2024-06-22 18:59:06] 2024-06-22 22:58:39,623 | INFO     | monitor loop #451: job 0:6241685112 is in state 'finished'
[2024-06-22 18:59:06] 2024-06-22 22:58:39,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-22 18:59:06] 2024-06-22 22:58:40,424 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-22 18:59:06] 2024-06-22 22:58:42,132 | INFO     | monitor loop #452: job 0:6241685112 is in state 'finished'
[2024-06-22 18:59:06] 2024-06-22 22:58:42,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-22 18:59:06] 2024-06-22 22:58:42,665 | INFO     | job 6241685112 has state=finished
[2024-06-22 18:59:06] 2024-06-22 22:58:42,666 | INFO     | preparing for final server update for job 6241685112 in state='finished'
[2024-06-22 18:59:06] 2024-06-22 22:58:42,666 | INFO     | this job has now completed (state=finished)
[2024-06-22 18:59:06] 2024-06-22 22:58:42,666 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-22 18:59:06] 2024-06-22 22:58:42,666 | INFO     | job 6241685112 has finished - writing final server update
[2024-06-22 18:59:06] 2024-06-22 22:58:42,667 | INFO     | total number of processed events: 400 (read)
[2024-06-22 18:59:06] 2024-06-22 22:58:42,671 | INFO     | executing command: lscpu
[2024-06-22 18:59:06] 2024-06-22 22:58:42,711 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-22 18:59:06] 2024-06-22 22:58:42,712 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-22 18:59:06] 2024-06-22 22:58:42,744 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-22 18:59:06] 2024-06-22 22:58:44,636 | INFO     | monitor loop #453: job 0:6241685112 is in state 'finished'
[2024-06-22 18:59:06] 2024-06-22 22:58:44,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,473 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-22 18:59:06] 2024-06-22 22:58:45,473 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6241685112/memory_monitor_summary.json (trf name=prmon)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,474 | INFO     | extracted standard info from prmon json
[2024-06-22 18:59:06] 2024-06-22 22:58:45,474 | INFO     | extracted standard memory fields from prmon json
[2024-06-22 18:59:06] 2024-06-22 22:58:45,474 | WARNING  | GPU info not found in prmon json
[2024-06-22 18:59:06] 2024-06-22 22:58:45,475 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 18:59:06] 2024-06-22 22:58:45,475 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | fitting pss+swap vs Time
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | model: linear, x: [1719091731.0, 1719091792.0, 1719091853.0, 1719091914.0, 1719091975.0, 1719092036.0, 1719092097.0, 1719092158.0, 1719092219.0, 1719092280.0, 1719
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | sum of square deviations: 204163828.0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | sum of deviations: 21376937783.000008
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | mean x: 1719094354.0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | mean y: 2465204.367816092
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | -- intersect: -179995007455.5031
[2024-06-22 18:59:06] 2024-06-22 22:58:45,477 | INFO     | intersect: -179995007455.5031
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | chi2: 2.0527046476936324
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | -- intersect: -179995007455.5031
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | current memory leak: 104.70 B/s (using 87 data points, chi2=2.05)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | ..............................
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . Timing measurements:
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . get job = 0 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . initial setup = 1 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . payload setup = 3 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . stage-in = 0 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . payload execution = 5691 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . stage-out = 0 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,478 | INFO     | . log creation = 0 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,479 | INFO     | ..............................
[2024-06-22 18:59:06] 2024-06-22 22:58:45,874 | INFO     | 
[2024-06-22 18:59:06] 2024-06-22 22:58:45,874 | INFO     | job summary report
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | --------------------------------------------------
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | PanDA job id: 6241685112
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | task id: 40024014
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | errors: (none)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | pilot state: finished 
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | transexitcode: 0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | exeerrorcode: 0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | exeerrordiag: 
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | exitcode: 0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | exitmsg: OK
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | cpuconsumptiontime: 38970 s
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | nevents: 400
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | neventsw: 0
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | pid: 97558
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | pgrp: 97558
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | corecount: 8
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | event service: False
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | sizes: {0: 2386726, 1: 2386925, 3: 2387131, 11: 2387159, 5698: 2413765, 5700: 2422725, 5701: 2422909, 5706: 2423079}
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | --------------------------------------------------
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | 
[2024-06-22 18:59:06] 2024-06-22 22:58:45,875 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,894 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,894 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 18:59:06] 2024-06-22 22:58:45,894 | INFO     | job 6241685112 has completed (purged errors)
[2024-06-22 18:59:06] 2024-06-22 22:58:45,894 | INFO     | overall cleanup function is called
[2024-06-22 18:59:06] 2024-06-22 22:58:46,902 | INFO     | --- collectZombieJob: --- 10, [97558]
[2024-06-22 18:59:06] 2024-06-22 22:58:46,903 | INFO     | zombie collector waiting for pid 97558
[2024-06-22 18:59:06] 2024-06-22 22:58:46,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 18:59:06] 2024-06-22 22:58:47,908 | INFO     | collected zombie processes
[2024-06-22 18:59:06] 2024-06-22 22:58:47,909 | INFO     | will now attempt to kill all subprocesses of pid=97558
[2024-06-22 18:59:06] 2024-06-22 22:58:47,992 | INFO     | process IDs to be killed: [97558] (in reverse order)
[2024-06-22 18:59:06] 2024-06-22 22:58:48,076 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 18:59:06] 2024-06-22 22:58:48,077 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 18:59:06] 2024-06-22 22:58:48,084 | INFO     | did not find any defunct processes belonging to 97558
[2024-06-22 18:59:06] 2024-06-22 22:58:48,089 | INFO     | did not find any defunct processes belonging to 97558
[2024-06-22 18:59:06] 2024-06-22 22:58:48,089 | INFO     | ready for new job
[2024-06-22 18:59:06] 2024-06-22 22:58:48,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 18:59:06] 2024-06-22 22:58:48,091 | INFO     | *************************************
[2024-06-22 18:59:06] 2024-06-22 22:58:48,091 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 18:59:06] 2024-06-22 22:58:48,091 | INFO     | *************************************
[2024-06-22 18:59:06] 2024-06-22 22:58:48,091 | INFO     | 
[2024-06-22 18:59:06] 2024-06-22 22:58:48,095 | INFO     | architecture information:
[2024-06-22 18:59:06] 2024-06-22 22:58:48,095 | INFO     | executing command: cat /etc/os-release
[2024-06-22 18:59:06] 2024-06-22 22:58:48,110 | INFO     | cat /etc/os-release:
[2024-06-22 18:59:06] NAME="CentOS Linux"
[2024-06-22 18:59:06] VERSION="7 (Core)"
[2024-06-22 18:59:06] ID="centos"
[2024-06-22 18:59:06] ID_LIKE="rhel fedora"
[2024-06-22 18:59:06] VERSION_ID="7"
[2024-06-22 18:59:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 18:59:06] ANSI_COLOR="0;31"
[2024-06-22 18:59:06] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 18:59:06] HOME_URL="https://www.centos.org/"
[2024-06-22 18:59:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 18:59:06] 
[2024-06-22 18:59:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 18:59:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 18:59:06] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 18:59:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 18:59:06] 
[2024-06-22 18:59:06] 2024-06-22 22:58:48,111 | INFO     | *************************************
[2024-06-22 18:59:06] 2024-06-22 22:58:48,613 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2024-06-22 18:59:06] 2024-06-22 22:58:48,632 | INFO     | sufficient remaining disk space (99250864128 B)
[2024-06-22 18:59:06] 2024-06-22 22:58:48,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 18:59:06] 2024-06-22 22:58:48,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 18:59:06] 2024-06-22 22:58:48,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 18:59:06] 2024-06-22 22:58:48,633 | INFO     | aborting loop
[2024-06-22 18:59:06] 2024-06-22 22:58:49,014 | INFO     | all data control threads have been joined
[2024-06-22 18:59:06] 2024-06-22 22:58:49,021 | INFO     | all job control threads have been joined
[2024-06-22 18:59:06] 2024-06-22 22:58:49,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 18:59:06] 2024-06-22 22:58:49,473 | INFO     | all payload control threads have been joined
[2024-06-22 18:59:06] 2024-06-22 22:58:49,564 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 18:59:06] 2024-06-22 22:58:49,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 18:59:06] 2024-06-22 22:58:49,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 18:59:06] 2024-06-22 22:58:49,638 | INFO     | [job] retrieve thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:49,639 | INFO     | [job] job monitor thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:49,826 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:49,990 | INFO     | [data] copytool_in thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,019 | INFO     | [data] control thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,025 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,026 | INFO     | [job] control thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,237 | INFO     | [job] validate thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,478 | INFO     | [payload] control thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,480 | INFO     | [payload] failed_post thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 18:59:06] 2024-06-22 22:58:50,623 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:50,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 18:59:06] 2024-06-22 22:58:51,184 | INFO     | [payload] validate_post thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:51,436 | INFO     | [data] copytool_out thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:51,573 | INFO     | [job] queue monitor thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:54,987 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:58:59,442 | INFO     | job.realtimelogging is not enabled
[2024-06-22 18:59:06] 2024-06-22 22:59:00,448 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 18:59:06] 2024-06-22 22:59:01,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087208609600)>', '<ExcThread(monitor, started 140086255544064)>']
[2024-06-22 18:59:06] 2024-06-22 22:59:01,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 18:59:06] 2024-06-22 22:59:01,630 | INFO     | [monitor] control thread has ended
[2024-06-22 18:59:06] 2024-06-22 22:59:06,134 | INFO     | all workflow threads have been joined
[2024-06-22 18:59:06] 2024-06-22 22:59:06,134 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 18:59:06] 2024-06-22 22:59:06,134 | INFO     | traces error code: 0
[2024-06-22 18:59:06] 2024-06-22 22:59:06,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 18:59:06] 2024-06-22 22:59:06,204 [wrapper] ==== pilot stdout END ====
[2024-06-22 18:59:06] 2024-06-22 22:59:06,207 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 18:59:06] 2024-06-22 22:59:06,208 [wrapper] pilotpid: 90904
[2024-06-22 18:59:06] 2024-06-22 22:59:06,210 [wrapper] Pilot exit status: 0
[2024-06-22 18:59:06] 2024-06-22 22:59:06,217 [wrapper] pandaids: 6241685112
[2024-06-22 18:59:06] 2024-06-22 22:59:06,254 [wrapper] cleanup supervisor_pilot 47292 90905
[2024-06-22 18:59:06] 2024-06-22 22:59:06,256 [wrapper] Test setup, not cleaning
[2024-06-22 18:59:06] 2024-06-22 22:59:06,257 [wrapper] ==== wrapper stdout END ====
[2024-06-22 18:59:06] 2024-06-22 22:59:06,259 [wrapper] ==== wrapper stderr END ====
[2024-06-22 18:59:06] 2024-06-22 22:59:06,263 [wrapper] apfmon messages muted
[2024-06-22 18:59:06]  *** Error codes and diagnostics ***
[2024-06-22 18:59:06]     "exeErrorCode": 0,
[2024-06-22 18:59:06]     "exeErrorDiag": "",
[2024-06-22 18:59:06]     "pilotErrorCode": 0,
[2024-06-22 18:59:06]     "pilotErrorDiag": "",
[2024-06-22 18:59:06]  *** Listing of results directory ***
[2024-06-22 18:59:06] total 835924
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas    469766 Jun 22 17:17 pilot3.tar.gz
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas      5654 Jun 22 17:21 queuedata.json
[2024-06-22 18:59:06] -rwx------ 1 boincer umatlas     32308 Jun 22 17:21 runpilot2-wrapper.sh
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas       100 Jun 22 17:23 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 18:59:06] -rwxr-xr-x 1 boincer umatlas      7986 Jun 22 17:23 run_atlas
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas       105 Jun 22 17:23 job.xml
[2024-06-22 18:59:06] drwxrwx--x 2 boincer umatlas      4096 Jun 22 17:23 shared
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas    482494 Jun 22 17:23 input.tar.gz
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas 595106523 Jun 22 17:23 EVNT.40024012._000011.pool.root.1
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas     17537 Jun 22 17:23 start_atlas.sh
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas         0 Jun 22 17:23 boinc_lockfile
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas      2512 Jun 22 17:23 pandaJob.out
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas       424 Jun 22 17:23 setup.sh.local
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas   1025761 Jun 22 17:23 agis_schedconf.cvmfs.json
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas         0 Jun 22 17:23 agis_ddmendpoints.agis.ALL.json
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas   1321363 Jun 22 17:23 cric_ddmendpoints.json
[2024-06-22 18:59:06] drwx------ 4 boincer umatlas      4096 Jun 22 17:23 pilot3
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas      6301 Jun 22 18:54 init_data.xml
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas 255642809 Jun 22 18:58 HITS.40024014._001869.pool.root.1
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas       530 Jun 22 18:58 boinc_task_state.xml
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas      1074 Jun 22 18:58 memory_monitor_summary.json
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas    310614 Jun 22 18:58 log.40024014._001869.job.log.tgz.1
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas        95 Jun 22 18:58 pilot_heartbeat.json
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas      7734 Jun 22 18:58 heartbeat.json
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas      8192 Jun 22 18:58 boinc_mmap_file
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas        27 Jun 22 18:58 wrapper_checkpoint.txt
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas      4283 Jun 22 18:59 pilotlog.txt
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas    538700 Jun 22 18:59 log.40024014._001869.job.log.1
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas       357 Jun 22 18:59 output.list
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas       620 Jun 22 18:59 runtime_log
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas    870400 Jun 22 18:59 result.tar.gz
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas     10999 Jun 22 18:59 runtime_log.err
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas       647 Jun 22 18:59 8kRMDmhLNf5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm1ynKDm8R4jDn.diag
[2024-06-22 18:59:06] -rw-r--r-- 1 boincer umatlas     21286 Jun 22 18:59 stderr.txt
[2024-06-22 18:59:06] HITS file was successfully produced:
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas 255642809 Jun 22 18:58 shared/HITS.pool.root.1
[2024-06-22 18:59:06]  *** Contents of shared directory: ***
[2024-06-22 18:59:06] total 832164
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas    482494 Jun 22 17:23 input.tar.gz
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas 595106523 Jun 22 17:23 ATLAS.root_0
[2024-06-22 18:59:06] -rw-r--r-- 2 boincer umatlas     17537 Jun 22 17:23 start_atlas.sh
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas 255642809 Jun 22 18:58 HITS.pool.root.1
[2024-06-22 18:59:06] -rw------- 1 boincer umatlas    870400 Jun 22 18:59 result.tar.gz
18:59:07 (86413): run_atlas exited; CPU time 38809.054940
18:59:07 (86413): called boinc_finish(0)

</stderr_txt>
]]>

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