Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-24 04:41:46 (78044): Detected: vboxwrapper 26206
2024-06-24 04:41:46 (78044): Detected: BOINC client v8.0.2
2024-06-24 04:41:46 (78044): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-24 04:41:47 (78044): Successfully copied 'init_data.xml' to the shared directory.
2024-06-24 04:41:47 (78044): Create VM. (boinc_e1188cb429b62e13, slot#66)
2024-06-24 04:41:48 (78044): Setting Memory Size for VM. (4250MB)
2024-06-24 04:41:48 (78044): Setting CPU Count for VM. (6)
2024-06-24 04:41:48 (78044): Setting Chipset Options for VM.
2024-06-24 04:41:49 (78044): Setting Graphics Controller Options for VM.
2024-06-24 04:41:49 (78044): Setting Boot Options for VM.
2024-06-24 04:41:49 (78044): Setting Network Configuration for NAT.
2024-06-24 04:41:49 (78044): Enabling VM Network Access.
2024-06-24 04:41:50 (78044): Disabling USB Support for VM.
2024-06-24 04:41:50 (78044): Disabling COM Port Support for VM.
2024-06-24 04:41:50 (78044): Disabling LPT Port Support for VM.
2024-06-24 04:41:50 (78044): Disabling Audio Support for VM.
2024-06-24 04:41:51 (78044): Disabling Clipboard Support for VM.
2024-06-24 04:41:51 (78044): Disabling Drag and Drop Support for VM.
2024-06-24 04:41:51 (78044): Adding storage controller(s) to VM.
2024-06-24 04:41:51 (78044): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-24 04:41:56 (78044): Adding VirtualBox Guest Additions to VM.
2024-06-24 04:41:56 (78044): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-24 04:41:56 (78044): forwarding host port 53702 to guest port 80
2024-06-24 04:41:57 (78044): Enabling remote desktop for VM.
2024-06-24 04:41:57 (78044): Enabling shared directory for VM.
2024-06-24 04:41:58 (78044): Starting VM using VBoxManage interface. (boinc_e1188cb429b62e13, slot#66)
2024-06-24 04:42:04 (78044): Successfully started VM. (PID = '79536')
2024-06-24 04:42:04 (78044): Reporting VM Process ID to BOINC.
2024-06-24 04:42:04 (78044): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-24 04:42:04 (78044): Guest Log: CPUID EDX: 0x178bfbff
2024-06-24 04:42:04 (78044): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-24 04:42:04 (78044): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-24 04:42:04 (78044): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-24 04:42:04 (78044): Detected: Web Application Enabled (http://localhost:53702)
2024-06-24 04:42:04 (78044): Detected: Remote Desktop Enabled (localhost:53707)
2024-06-24 04:42:04 (78044): Preference change detected
2024-06-24 04:42:04 (78044): Setting CPU throttle for VM. (100%)
2024-06-24 04:42:05 (78044): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-24 04:42:06 (78044): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-24 04:42:06 (78044): Guest Log: BIOS: Booting from Hard Disk...
2024-06-24 04:42:09 (78044): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-24 04:42:09 (78044): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-24 04:42:09 (78044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-24 04:42:13 (78044): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-24 04:42:13 (78044): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-24 04:42:18 (78044): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000144 main     Log opened 2024-06-24T04:42:16.222895000Z
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000218 main     OS Product: Linux
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000238 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000254 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000270 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000270 main     Process ID: 1326
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.000271 main     Package type: LINUX_64BITS_GENERIC
2024-06-24 04:42:18 (78044): Guest Log: 00:00:00.001410 main     5.2.32 r132073 started. Verbose level = 0
2024-06-24 04:42:18 (78044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-24 04:42:18 (78044): Guest Log: [INFO] Mounting shared directory
2024-06-24 04:42:18 (78044): Guest Log: [INFO] Checking for init_data.xml
2024-06-24 04:42:28 (78044): Guest Log: 00:00:10.005645 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 937 639 000ns (GuestNow=1 719 196 948 288 855 000 ns GuestLast=1 719 204 136 226 494 000 ns fSetTimeLastLoop=true )
2024-06-24 04:43:17 (78044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-24 04:43:17 (78044): Guest Log: [INFO] Detected branch: prod
2024-06-24 04:43:18 (78044): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-24 04:43:18 (78044): Guest Log: Copying input files
2024-06-24 04:43:20 (78044): Guest Log: Copied input files into RunAtlas.
2024-06-24 04:43:20 (78044): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2024-06-24 04:43:27 (78044): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-24 04:43:27 (78044): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-24 04:43:27 (78044): Guest Log: 2.6.3.0 1625 1 31672 134222 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2024-06-24 04:43:27 (78044): Guest Log: copied the webapp to /var/www
2024-06-24 04:43:27 (78044): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-24 04:43:27 (78044): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-24 04:43:27 (78044): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-24 04:43:27 (78044): Guest Log:  *** Starting ATLAS job. (PandaID=6241119584 taskID=40024023) ***
2024-06-24 06:22:08 (78044): Status Report: Elapsed Time: '6000.000000'
2024-06-24 06:22:08 (78044): Status Report: CPU Time: '29323.640625'
2024-06-24 06:51:23 (78044): Guest Log:  *** Job finished ***
2024-06-24 06:51:23 (78044): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:09,547 | INFO     | [data] copytool_out thread has finished
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:10,147 | INFO     | [job] queue monitor thread has finished
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:13,122 | INFO     | [data] queue_monitor thread has finished
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:13,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091725432640)>', '<ExcThread(monitor, started 140091162883840)>']
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:13,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:13,890 | INFO     | [monitor] control thread has ended
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,801 | INFO     | all workflow threads have been joined
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,802 | INFO     | end of generic workflow (traces error code: 0)
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,802 | INFO     | traces error code: 0
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,899 [wrapper] ==== pilot stdout END ====
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,919 [wrapper] ==== wrapper stdout RESUME ====
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,925 [wrapper] pilotpid: 6516
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:18,931 [wrapper] Pilot exit status: 0
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,182 [wrapper] pandaids: 6241119584
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,240 [wrapper] cleanup supervisor_pilot  4814 6517
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,248 [wrapper] Test setup, not cleaning
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,255 [wrapper] ==== wrapper stdout END ====
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,262 [wrapper] ==== wrapper stderr END ====
2024-06-24 06:51:23 (78044): Guest Log: 2024-06-24 04:51:19,290 [wrapper] apfmon messages muted
2024-06-24 06:51:23 (78044): Guest Log:  *** Error codes and diagnostics ***
2024-06-24 06:51:23 (78044): Guest Log:     "exeErrorCode": 0,
2024-06-24 06:51:23 (78044): Guest Log:     "exeErrorDiag": "",
2024-06-24 06:51:23 (78044): Guest Log:     "pilotErrorCode": 0,
2024-06-24 06:51:23 (78044): Guest Log:     "pilotErrorDiag": "",
2024-06-24 06:51:23 (78044): Guest Log:  *** Listing of results directory ***
2024-06-24 06:51:23 (78044): Guest Log: total 255220
2024-06-24 06:51:23 (78044): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 22 05:05 pilot3.tar.gz
2024-06-24 06:51:23 (78044): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 22 05:34 runpilot2-wrapper.sh
2024-06-24 06:51:23 (78044): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 22 05:34 queuedata.json
2024-06-24 06:51:23 (78044): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 24 02:43 start_atlas.sh
2024-06-24 06:51:23 (78044): Guest Log: -rwxr-xr-x. 1 atlas atlas    482492 Jun 24 02:43 input.tar.gz
2024-06-24 06:51:23 (78044): Guest Log: -rwxr-xr-x. 1 atlas atlas      9013 Jun 24 02:43 init_data.xml
2024-06-24 06:51:23 (78044): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 24 02:43 EVNT.40024021._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-24 06:51:23 (78044): Guest Log: -rw-r--r--. 1 atlas atlas      2515 Jun 24 02:43 pandaJob.out
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas       461 Jun 24 02:43 setup.sh.local
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas   1024662 Jun 24 02:44 agis_schedconf.cvmfs.json
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas         0 Jun 24 02:44 agis_ddmendpoints.agis.ALL.json
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 24 02:44 cric_ddmendpoints.json
2024-06-24 06:51:23 (78044): Guest Log: drwx------. 4 atlas atlas      4096 Jun 24 02:44 pilot3
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas 256322098 Jun 24 04:50 HITS.40024023._001613.pool.root.1
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas        95 Jun 24 04:50 pilot_heartbeat.json
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas      1034 Jun 24 04:50 memory_monitor_summary.json
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas    275929 Jun 24 04:50 log.40024023._001613.job.log.tgz.1
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas      7719 Jun 24 04:51 heartbeat.json
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas      4580 Jun 24 04:51 pilotlog.txt
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas    502959 Jun 24 04:51 log.40024023._001613.job.log.1
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas       357 Jun 24 04:51 output.list
2024-06-24 06:51:23 (78044): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 24 04:51 runtime_log
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas    798720 Jun 24 04:51 result.tar.gz
2024-06-24 06:51:23 (78044): Guest Log: -rw-r--r--. 1 atlas atlas     11290 Jun 24 04:51 runtime_log.err
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas       641 Jun 24 04:51 43GMDmKZ8e5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmYVnKDmIM1Hym.diag
2024-06-24 06:51:23 (78044): Guest Log: Looking for outputfile HITS.40024023._001613.pool.root.1
2024-06-24 06:51:23 (78044): Guest Log: HITS file was successfully produced
2024-06-24 06:51:23 (78044): Guest Log: -rw-------. 1 atlas atlas 256322098 Jun 24 04:50 /home/atlas/RunAtlas/HITS.40024023._001613.pool.root.1
2024-06-24 06:51:25 (78044): Guest Log: Successfully finished the ATLAS job!
2024-06-24 06:51:25 (78044): Guest Log: Copying the results back to the shared directory!
2024-06-24 06:51:25 (78044): Guest Log:  *** Contents of shared directory: ***
2024-06-24 06:51:25 (78044): Guest Log: total 836352
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root 598785598 Jun 24 02:41 ATLAS.root_0
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root 256322098 Jun 24  2024 HITS.pool.root.1
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root      9013 Jun 24 02:41 init_data.xml
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root    482492 Jun 22 12:15 input.tar.gz
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root    798720 Jun 24  2024 result.tar.gz
2024-06-24 06:51:25 (78044): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 22 12:15 start_atlas.sh
2024-06-24 06:51:25 (78044): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-24 06:51:25 (78044): VM Completion File Detected.
2024-06-24 06:51:25 (78044): Powering off VM.
2024-06-24 06:51:25 (78044): Successfully stopped VM.
2024-06-24 06:51:25 (78044): Deregistering VM. (boinc_e1188cb429b62e13, slot#66)
2024-06-24 06:51:25 (78044): Removing network bandwidth throttle group from VM.
2024-06-24 06:51:26 (78044): Removing VM from VirtualBox.
06:51:31 (78044): called boinc_finish(0)

</stderr_txt>
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