Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:55:29 (1037686): wrapper (7.7.26015): starting
01:55:29 (1037686): wrapper: running run_atlas (--nthreads 6)
[2024-06-25 01:55:29] Arguments: --nthreads 6
[2024-06-25 01:55:29] Threads: 6
[2024-06-25 01:55:29] Checking for CVMFS
[2024-06-25 01:55:29] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-25 01:55:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-25 01:55:29] Running cvmfs_config stat atlas.cern.ch
[2024-06-25 01:55:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-25 01:55:29] 2.11.2.0 1957927 7535 62948 134254 1 56 3317990 6144001 0 130560 0 12241815 99.995 1089387 7535 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2024-06-25 01:55:29] CVMFS is ok
[2024-06-25 01:55:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-25 01:55:29] Checking for apptainer binary...
[2024-06-25 01:55:29] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-25 01:55:29] Running /usr/bin/apptainer --version
[2024-06-25 01:55:29] apptainer version 1.3.0
[2024-06-25 01:55:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-25 01:55:29] Ryzen8
[2024-06-25 01:55:29] apptainer works
[2024-06-25 01:55:29] Set ATHENA_PROC_NUMBER=6
[2024-06-25 01:55:29] Set ATHENA_CORE_NUMBER=6
[2024-06-25 01:55:29] Starting ATLAS job with PandaID=6241019525
[2024-06-25 01:55:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-25 03:14:19]  *** The last 200 lines of the pilot log: ***
[2024-06-25 03:14:19]  domain=
[2024-06-25 03:14:19]  filesize=260946
[2024-06-25 03:14:19]  filetype=log
[2024-06-25 03:14:19]  guid=19d2dcd2-b7ca-4da4-a69b-2aae54e27fef
[2024-06-25 03:14:19]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-06-25 03:14:19]  is_tar=False
[2024-06-25 03:14:19]  lfn=log.40024014._001604.job.log.tgz.1
[2024-06-25 03:14:19]  mtime=0
[2024-06-25 03:14:19]  protocol_id=None
[2024-06-25 03:14:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-06-25 03:14:19]  replicas=None
[2024-06-25 03:14:19]  scope=mc23_13p6TeV
[2024-06-25 03:14:19]  status=None
[2024-06-25 03:14:19]  status_code=0
[2024-06-25 03:14:19]  storage_token=
[2024-06-25 03:14:19]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6241019525/log.40024014._001604.job.log.tgz.1
[2024-06-25 03:14:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/4d/log.40024014._001604.job.log.tgz.1
[2024-06-25 03:14:19]  workdir=None
[2024-06-25 03:14:19] ]
[2024-06-25 03:14:19] 2024-06-25 01:13:54,772 | INFO     | transferring file log.40024014._001604.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6241019525/log.40024014._001604.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-06-25 03:14:19] 2024-06-25 01:13:54,772 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6241019525/log.40024014._001604.job.log.tgz.1 /var/lib/boinc/slots/0/log.40024014._001604.job
[2024-06-25 03:14:19] 2024-06-25 01:13:54,780 | INFO     | adding to output.list: log.40024014._001604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/4d/log.40024014._001604.job.log.tg
[2024-06-25 03:14:19] 2024-06-25 01:13:54,781 | INFO     | summary of transferred files:
[2024-06-25 03:14:19] 2024-06-25 01:13:54,781 | INFO     |  -- lfn=log.40024014._001604.job.log.tgz.1, status_code=0, status=transferred
[2024-06-25 03:14:19] 2024-06-25 01:13:54,781 | INFO     | stage-out finished correctly
[2024-06-25 03:14:19] 2024-06-25 01:13:56,417 | INFO     | monitor loop #374: job 0:6241019525 is in state 'finished'
[2024-06-25 03:14:19] 2024-06-25 01:13:56,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-25 03:14:19] 2024-06-25 01:13:57,344 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-25 03:14:19] 2024-06-25 01:13:57,378 | INFO     | job 6241019525 has state=finished
[2024-06-25 03:14:19] 2024-06-25 01:13:57,378 | INFO     | preparing for final server update for job 6241019525 in state='finished'
[2024-06-25 03:14:19] 2024-06-25 01:13:57,379 | INFO     | this job has now completed (state=finished)
[2024-06-25 03:14:19] 2024-06-25 01:13:57,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-25 03:14:19] 2024-06-25 01:13:57,379 | INFO     | job 6241019525 has finished - writing final server update
[2024-06-25 03:14:19] 2024-06-25 01:13:57,379 | INFO     | total number of processed events: 400 (read)
[2024-06-25 03:14:19] 2024-06-25 01:13:57,380 | INFO     | executing command: lscpu
[2024-06-25 03:14:19] 2024-06-25 01:13:57,390 | INFO     | found 6 cores (6 cores per socket, 1 sockets)
[2024-06-25 03:14:19] 2024-06-25 01:13:57,390 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-25 03:14:19] 2024-06-25 01:13:57,404 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-25 03:14:19] 2024-06-25 01:13:58,920 | INFO     | monitor loop #375: job 0:6241019525 is in state 'finished'
[2024-06-25 03:14:19] 2024-06-25 01:13:58,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,602 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-25 03:14:19] 2024-06-25 01:13:59,602 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6241019525/memory_monitor_summary.json (trf name=prmon)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | INFO     | extracted standard info from prmon json
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | INFO     | extracted standard memory fields from prmon json
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | WARNING  | GPU info not found in prmon json
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | INFO     | fitting pss+swap vs Time
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | INFO     | model: linear, x: [1719273655.0, 1719273716.0, 1719273777.0, 1719273838.0, 1719273899.0, 1719273960.0, 1719274021.0, 1719274082.0, 1719274143.0, 1719274204.0, 1719
[2024-06-25 03:14:19] 2024-06-25 01:13:59,603 | INFO     | sum of square deviations: 106336877.5
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | sum of deviations: -6306934020.999998
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | mean x: 1719275759.5
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | mean y: 2621099.5714285714
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | -- intersect: 101974383238.92107
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | intersect: 101974383238.92107
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | chi2: 0.1151080120018993
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | -- intersect: 101974383238.92107
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | current memory leak: -59.31 B/s (using 70 data points, chi2=0.12)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | ..............................
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . Timing measurements:
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . get job = 0 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . initial setup = 1 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . payload setup = 2 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . stage-in = 0 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . payload execution = 4682 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . stage-out = 0 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | . log creation = 0 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,604 | INFO     | ..............................
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | 
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | job summary report
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | --------------------------------------------------
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | PanDA job id: 6241019525
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | task id: 40024014
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | errors: (none)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | pilot state: finished 
[2024-06-25 03:14:19] 2024-06-25 01:13:59,631 | INFO     | transexitcode: 0
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | exeerrorcode: 0
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | exeerrordiag: 
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | exitcode: 0
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | exitmsg: OK
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | cpuconsumptiontime: 26094 s
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | nevents: 400
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | neventsw: 0
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | pid: 1048435
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | pgrp: 1048435
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | corecount: 6
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | event service: False
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | sizes: {0: 2386675, 1: 2386874, 2: 2387080, 11: 2387108, 4688: 2413260, 4689: 2422220, 4691: 2422404, 4693: 2422574}
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | --------------------------------------------------
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | 
[2024-06-25 03:14:19] 2024-06-25 01:13:59,632 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,642 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,642 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-25 03:14:19] 2024-06-25 01:13:59,642 | INFO     | job 6241019525 has completed (purged errors)
[2024-06-25 03:14:19] 2024-06-25 01:13:59,642 | INFO     | overall cleanup function is called
[2024-06-25 03:14:19] 2024-06-25 01:14:00,648 | INFO     | --- collectZombieJob: --- 10, [1048435]
[2024-06-25 03:14:19] 2024-06-25 01:14:00,648 | INFO     | zombie collector waiting for pid 1048435
[2024-06-25 03:14:19] 2024-06-25 01:14:00,648 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-25 03:14:19] 2024-06-25 01:14:01,651 | INFO     | collected zombie processes
[2024-06-25 03:14:19] 2024-06-25 01:14:01,651 | INFO     | will now attempt to kill all subprocesses of pid=1048435
[2024-06-25 03:14:19] 2024-06-25 01:14:01,694 | INFO     | process IDs to be killed: [1048435] (in reverse order)
[2024-06-25 03:14:19] 2024-06-25 01:14:01,720 | WARNING  | found no corresponding commands to process id(s)
[2024-06-25 03:14:19] 2024-06-25 01:14:01,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-25 03:14:19] 2024-06-25 01:14:01,722 | INFO     | did not find any defunct processes belonging to 1048435
[2024-06-25 03:14:19] 2024-06-25 01:14:01,723 | INFO     | did not find any defunct processes belonging to 1048435
[2024-06-25 03:14:19] 2024-06-25 01:14:01,723 | INFO     | ready for new job
[2024-06-25 03:14:19] 2024-06-25 01:14:01,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-25 03:14:19] 2024-06-25 01:14:01,724 | INFO     | *************************************
[2024-06-25 03:14:19] 2024-06-25 01:14:01,724 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-25 03:14:19] 2024-06-25 01:14:01,724 | INFO     | *************************************
[2024-06-25 03:14:19] 2024-06-25 01:14:01,724 | INFO     | 
[2024-06-25 03:14:19] 2024-06-25 01:14:01,724 | INFO     | architecture information:
[2024-06-25 03:14:19] 2024-06-25 01:14:01,725 | INFO     | executing command: cat /etc/os-release
[2024-06-25 03:14:19] 2024-06-25 01:14:01,732 | INFO     | cat /etc/os-release:
[2024-06-25 03:14:19] NAME="CentOS Linux"
[2024-06-25 03:14:19] VERSION="7 (Core)"
[2024-06-25 03:14:19] ID="centos"
[2024-06-25 03:14:19] ID_LIKE="rhel fedora"
[2024-06-25 03:14:19] VERSION_ID="7"
[2024-06-25 03:14:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-25 03:14:19] ANSI_COLOR="0;31"
[2024-06-25 03:14:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-25 03:14:19] HOME_URL="https://www.centos.org/"
[2024-06-25 03:14:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-25 03:14:19] 
[2024-06-25 03:14:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-25 03:14:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-25 03:14:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-25 03:14:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-25 03:14:19] 
[2024-06-25 03:14:19] 2024-06-25 01:14:01,732 | INFO     | *************************************
[2024-06-25 03:14:19] 2024-06-25 01:14:02,235 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | INFO     | sufficient remaining disk space (110732771328 B)
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | INFO     | found 0 job(s) in 20 queues
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-25 03:14:19] 2024-06-25 01:14:02,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-25 03:14:19] 2024-06-25 01:14:02,254 | INFO     | all payload control threads have been joined
[2024-06-25 03:14:19] 2024-06-25 01:14:02,428 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-25 03:14:19] 2024-06-25 01:14:02,428 | INFO     | aborting loop
[2024-06-25 03:14:19] 2024-06-25 01:14:02,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-25 03:14:19] 2024-06-25 01:14:03,174 | INFO     | all data control threads have been joined
[2024-06-25 03:14:19] 2024-06-25 01:14:03,249 | INFO     | [job] retrieve thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:03,257 | INFO     | [payload] control thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:03,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-25 03:14:19] 2024-06-25 01:14:03,389 | INFO     | [payload] validate_post thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:03,434 | INFO     | [job] job monitor thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:03,829 | INFO     | [payload] execute_payloads thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:03,854 | INFO     | all job control threads have been joined
[2024-06-25 03:14:19] 2024-06-25 01:14:04,177 | INFO     | [data] control thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,352 | INFO     | [job] validate thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,440 | INFO     | [job] create_data_payload thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,474 | INFO     | [data] copytool_in thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,484 | INFO     | [payload] validate_pre thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-25 03:14:19] 2024-06-25 01:14:04,644 | INFO     | [payload] failed_post thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,817 | INFO     | [data] copytool_out thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:04,859 | INFO     | [job] control thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:05,645 | INFO     | [job] queue monitor thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:07,387 | INFO     | [data] queue_monitor thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:13,054 | INFO     | job.realtimelogging is not enabled
[2024-06-25 03:14:19] 2024-06-25 01:14:14,057 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-25 03:14:19] 2024-06-25 01:14:14,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184482322240)>', '<ExcThread(monitor, started 140183764723456)>']
[2024-06-25 03:14:19] 2024-06-25 01:14:14,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-25 03:14:19] 2024-06-25 01:14:14,300 | INFO     | [monitor] control thread has ended
[2024-06-25 03:14:19] 2024-06-25 01:14:19,160 | INFO     | all workflow threads have been joined
[2024-06-25 03:14:19] 2024-06-25 01:14:19,160 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-25 03:14:19] 2024-06-25 01:14:19,161 | INFO     | traces error code: 0
[2024-06-25 03:14:19] 2024-06-25 01:14:19,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-25 03:14:19] 2024-06-25 01:14:19,213 [wrapper] ==== pilot stdout END ====
[2024-06-25 03:14:19] 2024-06-25 01:14:19,214 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-25 03:14:19] 2024-06-25 01:14:19,215 [wrapper] pilotpid: 1041902
[2024-06-25 03:14:19] 2024-06-25 01:14:19,216 [wrapper] Pilot exit status: 0
[2024-06-25 03:14:19] 2024-06-25 01:14:19,220 [wrapper] pandaids: 6241019525
[2024-06-25 03:14:19] 2024-06-25 01:14:19,234 [wrapper] cleanup supervisor_pilot 1119467 1041903
[2024-06-25 03:14:19] 2024-06-25 01:14:19,235 [wrapper] Test setup, not cleaning
[2024-06-25 03:14:19] 2024-06-25 01:14:19,236 [wrapper] ==== wrapper stdout END ====
[2024-06-25 03:14:19] 2024-06-25 01:14:19,237 [wrapper] ==== wrapper stderr END ====
[2024-06-25 03:14:19] 2024-06-25 01:14:19,239 [wrapper] apfmon messages muted
[2024-06-25 03:14:19]  *** Error codes and diagnostics ***
[2024-06-25 03:14:19]     "exeErrorCode": 0,
[2024-06-25 03:14:19]     "exeErrorDiag": "",
[2024-06-25 03:14:19]     "pilotErrorCode": 0,
[2024-06-25 03:14:19]     "pilotErrorDiag": "",
[2024-06-25 03:14:19]  *** Listing of results directory ***
[2024-06-25 03:14:19] insgesamt 837820
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc    469766 22. Jun 06:05 pilot3.tar.gz
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc      5654 22. Jun 06:33 queuedata.json
[2024-06-25 03:14:19] -rwx------ 1 boinc boinc     32308 22. Jun 06:35 runpilot2-wrapper.sh
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc       100 25. Jun 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-25 03:14:19] -rwxr-xr-x 1 boinc boinc      7986 25. Jun 01:55 run_atlas
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc       105 25. Jun 01:55 job.xml
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc     17537 25. Jun 01:55 start_atlas.sh
[2024-06-25 03:14:19] drwxrwx--x 2 boinc boinc      4096 25. Jun 01:55 shared
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc    482493 25. Jun 01:55 input.tar.gz
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc      7173 25. Jun 01:55 init_data.xml
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc 599983249 25. Jun 01:55 EVNT.40024012._000032.pool.root.1
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc         0 25. Jun 01:55 boinc_lockfile
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc      2511 25. Jun 01:55 pandaJob.out
[2024-06-25 03:14:19] -rw------- 1 boinc boinc       461 25. Jun 01:55 setup.sh.local
[2024-06-25 03:14:19] -rw------- 1 boinc boinc   1022431 25. Jun 01:55 agis_schedconf.cvmfs.json
[2024-06-25 03:14:19] -rw------- 1 boinc boinc         0 25. Jun 01:55 agis_ddmendpoints.agis.ALL.json
[2024-06-25 03:14:19] -rw------- 1 boinc boinc   1321363 25. Jun 01:55 cric_ddmendpoints.json
[2024-06-25 03:14:19] drwx------ 4 boinc boinc      4096 25. Jun 01:55 pilot3
[2024-06-25 03:14:19] -rw------- 1 boinc boinc 252979766 25. Jun 03:13 HITS.40024014._001604.pool.root.1
[2024-06-25 03:14:19] -rw------- 1 boinc boinc        95 25. Jun 03:13 pilot_heartbeat.json
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc      8192 25. Jun 03:13 boinc_mmap_file
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc        27 25. Jun 03:13 wrapper_checkpoint.txt
[2024-06-25 03:14:19] -rw------- 1 boinc boinc      1022 25. Jun 03:13 memory_monitor_summary.json
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc       530 25. Jun 03:13 boinc_task_state.xml
[2024-06-25 03:14:19] -rw------- 1 boinc boinc    260946 25. Jun 03:13 log.40024014._001604.job.log.tgz.1
[2024-06-25 03:14:19] -rw------- 1 boinc boinc      7665 25. Jun 03:13 heartbeat.json
[2024-06-25 03:14:19] -rw------- 1 boinc boinc      4407 25. Jun 03:14 pilotlog.txt
[2024-06-25 03:14:19] -rw------- 1 boinc boinc    453509 25. Jun 03:14 log.40024014._001604.job.log.1
[2024-06-25 03:14:19] -rw------- 1 boinc boinc       357 25. Jun 03:14 output.list
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc       620 25. Jun 03:14 runtime_log
[2024-06-25 03:14:19] -rw------- 1 boinc boinc    737280 25. Jun 03:14 result.tar.gz
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc     11328 25. Jun 03:14 runtime_log.err
[2024-06-25 03:14:19] -rw------- 1 boinc boinc       630 25. Jun 03:14 jPMKDmFe7e5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmGXYKDmjDRvIo.diag
[2024-06-25 03:14:19] -rw-r--r-- 1 boinc boinc     20905 25. Jun 03:14 stderr.txt
[2024-06-25 03:14:19] HITS file was successfully produced:
[2024-06-25 03:14:19] -rw------- 1 boinc boinc 252979766 25. Jun 03:13 shared/HITS.pool.root.1
[2024-06-25 03:14:19]  *** Contents of shared directory: ***
[2024-06-25 03:14:19] insgesamt 834196
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc     17537 25. Jun 01:55 start_atlas.sh
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc    482493 25. Jun 01:55 input.tar.gz
[2024-06-25 03:14:19] -rw-r--r-- 2 boinc boinc 599983249 25. Jun 01:55 ATLAS.root_0
[2024-06-25 03:14:19] -rw------- 1 boinc boinc 252979766 25. Jun 03:13 HITS.pool.root.1
[2024-06-25 03:14:19] -rw------- 1 boinc boinc    737280 25. Jun 03:14 result.tar.gz
03:14:21 (1037686): run_atlas exited; CPU time 26081.096461
03:14:21 (1037686): called boinc_finish(0)

</stderr_txt>
]]>

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