Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:49 (1249186): wrapper (7.7.26015): starting
01:10:49 (1249186): wrapper: running run_atlas (--nthreads 4)
[2024-06-25 01:10:49] Arguments: --nthreads 4
[2024-06-25 01:10:49] Threads: 4
[2024-06-25 01:10:49] Checking for CVMFS
[2024-06-25 01:10:49] No cvmfs_config command found, will try listing directly
[2024-06-25 01:10:49] CVMFS is ok
[2024-06-25 01:10:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-25 01:10:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-25 01:10:49] Further information can be found at the LHC@home message board.
[2024-06-25 01:10:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-25 01:10:49] Checking for apptainer binary...
[2024-06-25 01:10:49] which: no apptainer in ((null))
[2024-06-25 01:10:49] apptainer is not installed, using version from CVMFS
[2024-06-25 01:10:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-25 01:10:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2024-06-25 01:10:50] apptainer works
[2024-06-25 01:10:50] Set ATHENA_PROC_NUMBER=4
[2024-06-25 01:10:50] Set ATHENA_CORE_NUMBER=4
[2024-06-25 01:10:50] Starting ATLAS job with PandaID=6240868673
[2024-06-25 01:10:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-25 05:41:19]  *** The last 200 lines of the pilot log: ***
[2024-06-25 05:41:19] 2024-06-25 03:40:59,041 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-25 05:41:19] 2024-06-25 03:40:59,047 | INFO     | fitting pss+swap vs Time
[2024-06-25 05:41:19] 2024-06-25 03:40:59,047 | INFO     | model: linear, x: [1719270685.0, 1719270746.0, 1719270807.0, 1719270868.0, 1719270929.0, 1719270990.0, 1719271051.0, 1719271112.0, 1719271173.0, 1719271234.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,048 | INFO     | sum of square deviations: 5836025702.5
[2024-06-25 05:41:19] 2024-06-25 03:40:59,050 | INFO     | sum of deviations: 106443210382.00002
[2024-06-25 05:41:19] 2024-06-25 03:40:59,050 | INFO     | mean x: 1719278767.5
[2024-06-25 05:41:19] 2024-06-25 03:40:59,050 | INFO     | mean y: 2306079.3082706765
[2024-06-25 05:41:19] 2024-06-25 03:40:59,050 | INFO     | -- intersect: -31355600976.500862
[2024-06-25 05:41:19] 2024-06-25 03:40:59,050 | INFO     | intersect: -31355600976.500862
[2024-06-25 05:41:19] 2024-06-25 03:40:59,051 | INFO     | chi2: 5.1413710542310085
[2024-06-25 05:41:19] 2024-06-25 03:40:59,051 | INFO     | model: linear, x: [1719270685.0, 1719270746.0, 1719270807.0, 1719270868.0, 1719270929.0, 1719270990.0, 1719271051.0, 1719271112.0, 1719271173.0, 1719271234.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,052 | INFO     | sum of square deviations: 5513070810.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,054 | INFO     | sum of deviations: 123091967282.99997
[2024-06-25 05:41:19] 2024-06-25 03:40:59,054 | INFO     | mean x: 1719278615.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,054 | INFO     | mean y: 2313804.754789272
[2024-06-25 05:41:19] 2024-06-25 03:40:59,054 | INFO     | -- intersect: -38384529811.34262
[2024-06-25 05:41:19] 2024-06-25 03:40:59,054 | INFO     | intersect: -38384529811.34262
[2024-06-25 05:41:19] 2024-06-25 03:40:59,055 | INFO     | chi2: 4.17298255097872
[2024-06-25 05:41:19] 2024-06-25 03:40:59,055 | INFO     | current chi2=4.17298255097872 (change=18.835219108633854 %)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,055 | INFO     | right removable region: 260
[2024-06-25 05:41:19] 2024-06-25 03:40:59,055 | INFO     | model: linear, x: [1719270990.0, 1719271051.0, 1719271112.0, 1719271173.0, 1719271234.0, 1719271295.0, 1719271356.0, 1719271417.0, 1719271478.0, 1719271539.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,056 | INFO     | sum of square deviations: 5513070810.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | sum of deviations: 44712375543.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | mean x: 1719278920.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | mean y: 2335168.5593869733
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | -- intersect: -13941444511.318052
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | intersect: -13941444511.318052
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | chi2: 2.7149092605562792
[2024-06-25 05:41:19] 2024-06-25 03:40:59,057 | INFO     | current chi2=2.7149092605562792 (change=47.19483904352539 %)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,058 | INFO     | model: linear, x: [1719271295.0, 1719271356.0, 1719271417.0, 1719271478.0, 1719271539.0, 1719271600.0, 1719271661.0, 1719271722.0, 1719271783.0, 1719271844.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,058 | INFO     | sum of square deviations: 5202255680.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | sum of deviations: -7428609280.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | mean x: 1719279072.5
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | mean y: 2360751.7734375
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | -- intersect: 2457421259.849675
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | intersect: 2457421259.849675
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | chi2: 1.1264242846666612
[2024-06-25 05:41:19] 2024-06-25 03:40:59,059 | INFO     | current chi2=1.1264242846666612 (change=58.50968940170548 %)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,060 | INFO     | model: linear, x: [1719271600.0, 1719271661.0, 1719271722.0, 1719271783.0, 1719271844.0, 1719271905.0, 1719271966.0, 1719272027.0, 1719272088.0, 1719272149.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,060 | INFO     | sum of square deviations: 4903347750.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | sum of deviations: -18722486915.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | mean x: 1719279225.0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | mean y: 2366477.123505976
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | -- intersect: 6567102334.027361
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | intersect: 6567102334.027361
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | chi2: 1.0185979832839216
[2024-06-25 05:41:19] 2024-06-25 03:40:59,061 | INFO     | current chi2=1.0185979832839216 (change=9.572441117482503 %)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,062 | INFO     | left removable region: 30
[2024-06-25 05:41:19] 2024-06-25 03:40:59,062 | INFO     | model: linear, x: [1719272515.0, 1719272576.0, 1719272637.0, 1719272698.0, 1719272759.0, 1719272820.0, 1719272881.0, 1719272942.0, 1719273003.0, 1719273064.0, 1719
[2024-06-25 05:41:19] 2024-06-25 03:40:59,062 | INFO     | sum of square deviations: 3772712597.5
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | sum of deviations: -1263453959.9999998
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | mean x: 1719279499.5
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | mean y: 2376209.843478261
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | -- intersect: 578150387.1369004
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | intersect: 578150387.1369004
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | chi2: 0.002171012422556062
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | -- intersect: 578150387.1369004
[2024-06-25 05:41:19] 2024-06-25 03:40:59,063 | INFO     | current memory leak: -0.33 B/s (using 230 data points, chi2=0.00)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | ..............................
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . Timing measurements:
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . get job = 0 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . initial setup = 1 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . payload setup = 5 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . stage-in = 0 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . payload execution = 16170 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . stage-out = 0 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | . log creation = 0 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,064 | INFO     | ..............................
[2024-06-25 05:41:19] 2024-06-25 03:40:59,120 | INFO     | 
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | job summary report
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | --------------------------------------------------
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | PanDA job id: 6240868673
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | task id: 40024023
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | errors: (none)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-25 05:41:19] 2024-06-25 03:40:59,121 | INFO     | pilot state: finished 
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | transexitcode: 0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | exeerrorcode: 0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | exeerrordiag: 
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | exitcode: 0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | exitmsg: OK
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | cpuconsumptiontime: 61430 s
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | nevents: 400
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | neventsw: 0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,122 | INFO     | pid: 1260265
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | pgrp: 1260265
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | corecount: 4
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | event service: False
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | sizes: {0: 2386861, 3: 2387067, 11: 2387095, 16178: 2418758, 16180: 2427796, 16183: 2427910}
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | --------------------------------------------------
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | 
[2024-06-25 05:41:19] 2024-06-25 03:40:59,123 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-06-25 05:41:19] 2024-06-25 03:40:59,138 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | job 6240868673 has completed (purged errors)
[2024-06-25 05:41:19] 2024-06-25 03:40:59,140 | INFO     | overall cleanup function is called
[2024-06-25 05:41:19] 2024-06-25 03:41:00,146 | INFO     | --- collectZombieJob: --- 10, [1260265]
[2024-06-25 05:41:19] 2024-06-25 03:41:00,146 | INFO     | zombie collector waiting for pid 1260265
[2024-06-25 05:41:19] 2024-06-25 03:41:00,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-25 05:41:19] 2024-06-25 03:41:01,151 | INFO     | collected zombie processes
[2024-06-25 05:41:19] 2024-06-25 03:41:01,151 | INFO     | will now attempt to kill all subprocesses of pid=1260265
[2024-06-25 05:41:19] 2024-06-25 03:41:01,273 | INFO     | process IDs to be killed: [1260265] (in reverse order)
[2024-06-25 05:41:19] 2024-06-25 03:41:01,326 | WARNING  | found no corresponding commands to process id(s)
[2024-06-25 05:41:19] 2024-06-25 03:41:01,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-25 05:41:19] 2024-06-25 03:41:01,330 | INFO     | did not find any defunct processes belonging to 1260265
[2024-06-25 05:41:19] 2024-06-25 03:41:01,332 | INFO     | did not find any defunct processes belonging to 1260265
[2024-06-25 05:41:19] 2024-06-25 03:41:01,332 | INFO     | ready for new job
[2024-06-25 05:41:19] 2024-06-25 03:41:01,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-25 05:41:19] 2024-06-25 03:41:01,334 | INFO     | *************************************
[2024-06-25 05:41:19] 2024-06-25 03:41:01,334 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-25 05:41:19] 2024-06-25 03:41:01,334 | INFO     | *************************************
[2024-06-25 05:41:19] 2024-06-25 03:41:01,334 | INFO     | 
[2024-06-25 05:41:19] 2024-06-25 03:41:01,335 | INFO     | architecture information:
[2024-06-25 05:41:19] 2024-06-25 03:41:01,336 | INFO     | executing command: cat /etc/os-release
[2024-06-25 05:41:19] 2024-06-25 03:41:01,346 | INFO     | cat /etc/os-release:
[2024-06-25 05:41:19] NAME="CentOS Linux"
[2024-06-25 05:41:19] VERSION="7 (Core)"
[2024-06-25 05:41:19] ID="centos"
[2024-06-25 05:41:19] ID_LIKE="rhel fedora"
[2024-06-25 05:41:19] VERSION_ID="7"
[2024-06-25 05:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-25 05:41:19] ANSI_COLOR="0;31"
[2024-06-25 05:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-25 05:41:19] HOME_URL="https://www.centos.org/"
[2024-06-25 05:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-25 05:41:19] 
[2024-06-25 05:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-25 05:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-25 05:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-25 05:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-25 05:41:19] 
[2024-06-25 05:41:19] 2024-06-25 03:41:01,346 | INFO     | *************************************
[2024-06-25 05:41:19] 2024-06-25 03:41:01,848 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-06-25 05:41:19] 2024-06-25 03:41:01,863 | INFO     | sufficient remaining disk space (1686891397120 B)
[2024-06-25 05:41:19] 2024-06-25 03:41:01,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | INFO     | found 0 job(s) in 20 queues
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-25 05:41:19] 2024-06-25 03:41:01,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-25 05:41:19] 2024-06-25 03:41:01,906 | INFO     | all job control threads have been joined
[2024-06-25 05:41:19] 2024-06-25 03:41:02,226 | INFO     | all data control threads have been joined
[2024-06-25 05:41:19] 2024-06-25 03:41:02,236 | INFO     | all payload control threads have been joined
[2024-06-25 05:41:19] 2024-06-25 03:41:02,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-25 05:41:19] 2024-06-25 03:41:02,634 | INFO     | aborting loop
[2024-06-25 05:41:19] 2024-06-25 03:41:02,866 | INFO     | [job] retrieve thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:02,914 | INFO     | [job] control thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:02,926 | INFO     | [payload] validate_post thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,231 | INFO     | [data] control thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,241 | INFO     | [payload] control thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,348 | INFO     | [job] validate thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,351 | INFO     | [job] create_data_payload thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-25 05:41:19] 2024-06-25 03:41:03,510 | INFO     | [data] copytool_in thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,585 | INFO     | [payload] validate_pre thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,638 | INFO     | [payload] failed_post thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,639 | INFO     | [job] job monitor thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:03,871 | INFO     | [payload] execute_payloads thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:04,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-25 05:41:19] 2024-06-25 03:41:05,131 | INFO     | [job] queue monitor thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:05,368 | INFO     | [data] copytool_out thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:05,869 | INFO     | [data] queue_monitor thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:12,223 | INFO     | job.realtimelogging is not enabled
[2024-06-25 05:41:19] 2024-06-25 03:41:13,228 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-25 05:41:19] 2024-06-25 03:41:13,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47810206307392)>', '<ExcThread(monitor, started 47810397087488)>']
[2024-06-25 05:41:19] 2024-06-25 03:41:13,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-25 05:41:19] 2024-06-25 03:41:13,913 | INFO     | [monitor] control thread has ended
[2024-06-25 05:41:19] 2024-06-25 03:41:18,816 | INFO     | all workflow threads have been joined
[2024-06-25 05:41:19] 2024-06-25 03:41:18,816 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-25 05:41:19] 2024-06-25 03:41:18,817 | INFO     | traces error code: 0
[2024-06-25 05:41:19] 2024-06-25 03:41:18,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-25 05:41:19] 2024-06-25 03:41:18,903 [wrapper] ==== pilot stdout END ====
[2024-06-25 05:41:19] 2024-06-25 03:41:18,905 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-25 05:41:19] 2024-06-25 03:41:18,907 [wrapper] pilotpid: 1253397
[2024-06-25 05:41:19] 2024-06-25 03:41:18,910 [wrapper] Pilot exit status: 0
[2024-06-25 05:41:19] 2024-06-25 03:41:18,933 [wrapper] pandaids: 6240868673
[2024-06-25 05:41:19] 2024-06-25 03:41:18,972 [wrapper] cleanup supervisor_pilot 1620481 1253398
[2024-06-25 05:41:19] 2024-06-25 03:41:18,974 [wrapper] Test setup, not cleaning
[2024-06-25 05:41:19] 2024-06-25 03:41:18,976 [wrapper] ==== wrapper stdout END ====
[2024-06-25 05:41:19] 2024-06-25 03:41:18,978 [wrapper] ==== wrapper stderr END ====
[2024-06-25 05:41:19] 2024-06-25 03:41:18,981 [wrapper] apfmon messages muted
[2024-06-25 05:41:19]  *** Error codes and diagnostics ***
[2024-06-25 05:41:19]     "exeErrorCode": 0,
[2024-06-25 05:41:19]     "exeErrorDiag": "",
[2024-06-25 05:41:19]     "pilotErrorCode": 0,
[2024-06-25 05:41:19]     "pilotErrorDiag": "",
[2024-06-25 05:41:19]  *** Listing of results directory ***
[2024-06-25 05:41:19] total 841704
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc    469766 Jun 22 04:07 pilot3.tar.gz
[2024-06-25 05:41:19] -rwx------ 1 boinc boinc     32308 Jun 22 04:35 runpilot2-wrapper.sh
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc      5654 Jun 22 04:35 queuedata.json
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc       100 Jun 25 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-25 05:41:19] -rwxr-xr-x 1 boinc boinc      7986 Jun 25 01:10 run_atlas
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc       105 Jun 25 01:10 job.xml
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc 596798658 Jun 25 01:10 EVNT.40024021._000015.pool.root.1
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc     17537 Jun 25 01:10 start_atlas.sh
[2024-06-25 05:41:19] drwxrwx--x 2 boinc boinc      4096 Jun 25 01:10 shared
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc    482480 Jun 25 01:10 input.tar.gz
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc      6455 Jun 25 01:10 init_data.xml
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc         0 Jun 25 01:10 boinc_lockfile
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc      2516 Jun 25 01:10 pandaJob.out
[2024-06-25 05:41:19] -rw------- 1 boinc boinc       424 Jun 25 01:10 setup.sh.local
[2024-06-25 05:41:19] -rw------- 1 boinc boinc   1022447 Jun 25 01:10 agis_schedconf.cvmfs.json
[2024-06-25 05:41:19] -rw------- 1 boinc boinc   1321363 Jun 25 01:10 cric_ddmendpoints.json
[2024-06-25 05:41:19] drwx------ 4 boinc boinc      4096 Jun 25 01:11 pilot3
[2024-06-25 05:41:19] -rw------- 1 boinc boinc 257514640 Jun 25 05:40 HITS.40024023._001577.pool.root.1
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc       531 Jun 25 05:40 boinc_task_state.xml
[2024-06-25 05:41:19] -rw------- 1 boinc boinc        95 Jun 25 05:40 pilot_heartbeat.json
[2024-06-25 05:41:19] -rw------- 1 boinc boinc      1043 Jun 25 05:40 memory_monitor_summary.json
[2024-06-25 05:41:19] -rw------- 1 boinc boinc         0 Jun 25 05:40 agis_ddmendpoints.agis.ALL.json
[2024-06-25 05:41:19] -rw------- 1 boinc boinc    364693 Jun 25 05:40 log.40024023._001577.job.log.tgz.1
[2024-06-25 05:41:19] -rw------- 1 boinc boinc      7756 Jun 25 05:40 heartbeat.json
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc      8192 Jun 25 05:41 boinc_mmap_file
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc        28 Jun 25 05:41 wrapper_checkpoint.txt
[2024-06-25 05:41:19] -rw------- 1 boinc boinc      4417 Jun 25 05:41 pilotlog.txt
[2024-06-25 05:41:19] -rw------- 1 boinc boinc   1666777 Jun 25 05:41 log.40024023._001577.job.log.1
[2024-06-25 05:41:19] -rw------- 1 boinc boinc       357 Jun 25 05:41 output.list
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc       620 Jun 25 05:41 runtime_log
[2024-06-25 05:41:19] -rw------- 1 boinc boinc   2048000 Jun 25 05:41 result.tar.gz
[2024-06-25 05:41:19] -rw------- 1 boinc boinc       659 Jun 25 05:41 ttzMDmrl5e5n7Olcko1bjSoqABFKDmABFKDmOtvXDmKWrKDmKaSRPo.diag
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc     11410 Jun 25 05:41 runtime_log.err
[2024-06-25 05:41:19] -rw-r--r-- 1 boinc boinc     21290 Jun 25 05:41 stderr.txt
[2024-06-25 05:41:19] HITS file was successfully produced:
[2024-06-25 05:41:19] -rw------- 1 boinc boinc 257514640 Jun 25 05:40 shared/HITS.pool.root.1
[2024-06-25 05:41:19]  *** Contents of shared directory: ***
[2024-06-25 05:41:19] total 836792
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc 596798658 Jun 25 01:10 ATLAS.root_0
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc     17537 Jun 25 01:10 start_atlas.sh
[2024-06-25 05:41:19] -rw-r--r-- 2 boinc boinc    482480 Jun 25 01:10 input.tar.gz
[2024-06-25 05:41:19] -rw------- 1 boinc boinc 257514640 Jun 25 05:40 HITS.pool.root.1
[2024-06-25 05:41:19] -rw------- 1 boinc boinc   2048000 Jun 25 05:41 result.tar.gz
05:41:21 (1249186): run_atlas exited; CPU time 61273.313681
05:41:21 (1249186): called boinc_finish(0)

</stderr_txt>
]]>

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