Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 10:01:37 (3376): Detected: vboxwrapper 26206
2024-06-22 10:01:37 (3376): Detected: BOINC client v7.24.1
2024-06-22 10:01:37 (3376): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-22 10:01:38 (3376): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 10:01:38 (3376): Create VM. (boinc_071954f1ec539ca6, slot#2)
2024-06-22 10:01:39 (3376): Setting Memory Size for VM. (4600MB)
2024-06-22 10:01:39 (3376): Setting CPU Count for VM. (6)
2024-06-22 10:01:39 (3376): Setting Chipset Options for VM.
2024-06-22 10:01:39 (3376): Setting Graphics Controller Options for VM.
2024-06-22 10:01:40 (3376): Setting Boot Options for VM.
2024-06-22 10:01:40 (3376): Setting Network Configuration for NAT.
2024-06-22 10:01:40 (3376): Enabling VM Network Access.
2024-06-22 10:01:40 (3376): Disabling USB Support for VM.
2024-06-22 10:01:41 (3376): Disabling COM Port Support for VM.
2024-06-22 10:01:41 (3376): Disabling LPT Port Support for VM.
2024-06-22 10:01:41 (3376): Disabling Audio Support for VM.
2024-06-22 10:01:41 (3376): Disabling Clipboard Support for VM.
2024-06-22 10:01:42 (3376): Disabling Drag and Drop Support for VM.
2024-06-22 10:01:42 (3376): Adding storage controller(s) to VM.
2024-06-22 10:01:42 (3376): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 10:01:43 (3376): Adding VirtualBox Guest Additions to VM.
2024-06-22 10:01:43 (3376): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 10:01:43 (3376): forwarding host port 60037 to guest port 80
2024-06-22 10:01:43 (3376): Enabling remote desktop for VM.
2024-06-22 10:01:44 (3376): Enabling shared directory for VM.
2024-06-22 10:01:45 (3376): Starting VM using VBoxManage interface. (boinc_071954f1ec539ca6, slot#2)
2024-06-22 10:01:50 (3376): Successfully started VM. (PID = '15076')
2024-06-22 10:01:50 (3376): Reporting VM Process ID to BOINC.
2024-06-22 10:01:50 (3376): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-22 10:01:50 (3376): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 10:01:50 (3376): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 10:01:50 (3376): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 10:01:50 (3376): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 10:01:50 (3376): Detected: Web Application Enabled (http://localhost:60037)
2024-06-22 10:01:50 (3376): Detected: Remote Desktop Enabled (localhost:60038)
2024-06-22 10:01:50 (3376): Preference change detected
2024-06-22 10:01:50 (3376): Setting CPU throttle for VM. (100%)
2024-06-22 10:01:51 (3376): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 10:01:52 (3376): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 10:01:52 (3376): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 10:01:54 (3376): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 10:01:54 (3376): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 10:01:54 (3376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 10:02:00 (3376): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 10:02:00 (3376): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 10:02:04 (3376): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000102 main     Log opened 2024-06-22T10:02:02.583271000Z
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000181 main     OS Product: Linux
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000201 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000217 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000234 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000235 main     Process ID: 1348
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000235 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 10:02:04 (3376): Guest Log: 00:00:00.000906 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 10:02:04 (3376): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 10:02:04 (3376): Guest Log: [INFO] Mounting shared directory
2024-06-22 10:02:04 (3376): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 10:02:14 (3376): Guest Log: 00:00:10.037122 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 964 328 000ns (GuestNow=1 719 043 334 620 940 000 ns GuestLast=1 719 050 522 585 268 000 ns fSetTimeLastLoop=true )
2024-06-22 10:03:02 (3376): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 10:03:02 (3376): Guest Log: [INFO] Detected branch: prod
2024-06-22 10:03:03 (3376): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 10:03:03 (3376): Guest Log: Copying input files
2024-06-22 10:03:05 (3376): Guest Log: Copied input files into RunAtlas.
2024-06-22 10:03:05 (3376): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 10:03:05 (3376): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 10:03:05 (3376): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 10:03:05 (3376): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 10:03:13 (3376): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 10:03:13 (3376): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 10:03:13 (3376): Guest Log: 2.6.3.0 1633 0 30156 134158 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-22 10:03:13 (3376): Guest Log: copied the webapp to /var/www
2024-06-22 10:03:13 (3376): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-22 10:03:13 (3376): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-22 10:03:15 (3376): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 10:03:15 (3376): Guest Log:  *** Starting ATLAS job. (PandaID=6240639698 taskID=38920995) ***
2024-06-22 11:41:53 (3376): Status Report: Elapsed Time: '6000.000000'
2024-06-22 11:41:53 (3376): Status Report: CPU Time: '1587.843750'
2024-06-22 13:21:56 (3376): Status Report: Elapsed Time: '12000.000000'
2024-06-22 13:21:56 (3376): Status Report: CPU Time: '36419.640625'
2024-06-22 14:27:05 (3376): Guest Log:  *** Job finished ***
2024-06-22 14:27:05 (3376): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:49,097 | INFO     | [job] queue monitor thread has finished
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:49,351 | INFO     | [data] copytool_out thread has finished
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:51,559 | INFO     | [data] queue_monitor thread has finished
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:53,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718817879872)>', '<ExcThread(monitor, started 140718093891328)>']
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:54,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:54,093 | INFO     | [monitor] control thread has ended
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,086 | INFO     | all workflow threads have been joined
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,086 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,086 | INFO     | traces error code: 0
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,146 [wrapper] ==== pilot stdout END ====
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,151 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,155 [wrapper] pilotpid: 6726
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:58,160 [wrapper] Pilot exit status: 0
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,667 [wrapper] pandaids: 6240639698
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,696 [wrapper] cleanup supervisor_pilot 15248 6727
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,701 [wrapper] Test setup, not cleaning
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,706 [wrapper] ==== wrapper stdout END ====
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,711 [wrapper] ==== wrapper stderr END ====
2024-06-22 14:27:05 (3376): Guest Log: 2024-06-22 12:26:59,721 [wrapper] apfmon messages muted
2024-06-22 14:27:05 (3376): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 14:27:05 (3376): Guest Log:     "exeErrorCode": 0,
2024-06-22 14:27:05 (3376): Guest Log:     "exeErrorDiag": "",
2024-06-22 14:27:05 (3376): Guest Log:     "pilotErrorCode": 0,
2024-06-22 14:27:05 (3376): Guest Log:     "pilotErrorDiag": "",
2024-06-22 14:27:05 (3376): Guest Log:  *** Listing of results directory ***
2024-06-22 14:27:05 (3376): Guest Log: total 346524
2024-06-22 14:27:05 (3376): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 22 00:37 pilot3.tar.gz
2024-06-22 14:27:05 (3376): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 22 00:53 queuedata.json
2024-06-22 14:27:05 (3376): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 22 00:54 runpilot2-wrapper.sh
2024-06-22 14:27:05 (3376): Guest Log: -rwxr-xr-x. 1 atlas atlas      9042 Jun 22 08:03 init_data.xml
2024-06-22 14:27:05 (3376): Guest Log: -rwxr-xr-x. 1 atlas atlas    482538 Jun 22 08:03 input.tar.gz
2024-06-22 14:27:05 (3376): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 22 08:03 start_atlas.sh
2024-06-22 14:27:05 (3376): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 08:03 EVNT.38776180._000832.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 14:27:05 (3376): Guest Log: -rw-r--r--. 1 atlas atlas      2615 Jun 22 08:03 pandaJob.out
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 08:04 setup.sh.local
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 08:19 cric_ddmendpoints.json
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas   1025969 Jun 22 08:21 agis_schedconf.cvmfs.json
2024-06-22 14:27:05 (3376): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 08:21 pilot3
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas 348729050 Jun 22 12:25 HITS.38920995._057779.pool.root.1
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 12:26 pilot_heartbeat.json
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas      1034 Jun 22 12:26 memory_monitor_summary.json
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 12:26 agis_ddmendpoints.agis.ALL.json
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas    346477 Jun 22 12:26 log.38920995._057779.job.log.tgz.1
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas      7744 Jun 22 12:26 heartbeat.json
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 22 12:26 pilotlog.txt
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas    977245 Jun 22 12:26 log.38920995._057779.job.log.1
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 12:26 output.list
2024-06-22 14:27:05 (3376): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 12:26 runtime_log
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas   1341440 Jun 22 12:26 result.tar.gz
2024-06-22 14:27:05 (3376): Guest Log: -rw-r--r--. 1 atlas atlas     10919 Jun 22 12:26 runtime_log.err
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas       643 Jun 22 12:26 3W4KDmkC4e5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmTInKDmfpenIn.diag
2024-06-22 14:27:05 (3376): Guest Log: Looking for outputfile HITS.38920995._057779.pool.root.1
2024-06-22 14:27:05 (3376): Guest Log: HITS file was successfully produced
2024-06-22 14:27:05 (3376): Guest Log: -rw-------. 1 atlas atlas 348729050 Jun 22 12:25 /home/atlas/RunAtlas/HITS.38920995._057779.pool.root.1
2024-06-22 14:27:06 (3376): Guest Log: Successfully finished the ATLAS job!
2024-06-22 14:27:06 (3376): Guest Log: Copying the results back to the shared directory!
2024-06-22 14:27:07 (3376): Guest Log:  *** Contents of shared directory: ***
2024-06-22 14:27:07 (3376): Guest Log: total 960876
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root 633344741 Jun 22 08:01 ATLAS.root_0
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root 348729050 Jun 22  2024 HITS.pool.root.1
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root      9042 Jun 22 08:01 init_data.xml
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root    482538 Jun 22 07:14 input.tar.gz
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root   1341440 Jun 22  2024 result.tar.gz
2024-06-22 14:27:07 (3376): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 22 07:14 start_atlas.sh
2024-06-22 14:27:07 (3376): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 14:27:07 (3376): VM Completion File Detected.
2024-06-22 14:27:07 (3376): Powering off VM.
2024-06-22 14:27:07 (3376): Successfully stopped VM.
2024-06-22 14:27:07 (3376): Deregistering VM. (boinc_071954f1ec539ca6, slot#2)
2024-06-22 14:27:08 (3376): Removing network bandwidth throttle group from VM.
2024-06-22 14:27:08 (3376): Removing VM from VirtualBox.
14:27:13 (3376): called boinc_finish(0)

</stderr_txt>
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