| Name | i9YMDmxA2e5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmGCnKDm5snaom_0 |
| Workunit | 223694814 |
| Created | 21 Jun 2024, 22:44:59 UTC |
| Sent | 22 Jun 2024, 5:05:08 UTC |
| Report deadline | 30 Jun 2024, 5:05:08 UTC |
| Received | 22 Jun 2024, 5:20:24 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830559 |
| Run time | 7 min 10 sec |
| CPU time | 14 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 50.70 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 66.37 MB |
| Peak swap size | 31.65 GB |
| Peak disk usage | 1.12 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 01:09:03 (55858): wrapper (7.7.26015): starting 01:09:03 (55858): wrapper: running run_atlas (--nthreads 8) [2024-06-22 01:09:03] Arguments: --nthreads 8 [2024-06-22 01:09:03] Threads: 8 [2024-06-22 01:09:03] Checking for CVMFS [2024-06-22 01:09:04] Probing /cvmfs/atlas.cern.ch... OK [2024-06-22 01:09:04] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-06-22 01:09:04] Running cvmfs_config stat atlas.cern.ch [2024-06-22 01:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-06-22 01:09:05] 2.11.2.0 87978 2051 85692 134154 2 125 14033349 18432000 20091 130560 0 10784892 98.922 22766701 53241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1 [2024-06-22 01:09:05] CVMFS is ok [2024-06-22 01:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-06-22 01:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-06-22 01:09:05] Further information can be found at the LHC@home message board. [2024-06-22 01:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-06-22 01:09:05] Checking for apptainer binary... [2024-06-22 01:09:05] Using apptainer found in PATH at /usr/bin/apptainer [2024-06-22 01:09:05] Running /usr/bin/apptainer --version [2024-06-22 01:09:05] apptainer version 1.3.1-1.el7 [2024-06-22 01:09:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-06-22 01:09:18] c-212-20.aglt2.org [2024-06-22 01:09:18] apptainer works [2024-06-22 01:09:18] Set ATHENA_PROC_NUMBER=8 [2024-06-22 01:09:18] Set ATHENA_CORE_NUMBER=8 [2024-06-22 01:09:18] Starting ATLAS job with PandaID=6240458604 [2024-06-22 01:09:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-06-22 01:16:10] *** The last 200 lines of the pilot log: *** [2024-06-22 01:16:10] if _stage_out_new(job, args): [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/data.py", line 994, in _stage_out_new [2024-06-22 01:16:10] create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup, [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/data.py", line 757, in create_log [2024-06-22 01:16:10] user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2098, in remove_redundant_files [2024-06-22 01:16:10] list_work_dir(workdir) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2044, in list_work_dir [2024-06-22 01:16:10] _, stdout, stderr = execute(cmd) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-06-22 01:16:10] process = subprocess.Popen(exe, [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-22 01:16:10] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-22 01:16:10] [2024-06-22 01:16:10] None [2024-06-22 01:16:10] exception has been put in bucket queue belonging to thread 'copytool_out' [2024-06-22 01:16:10] setting graceful stop in 10 s since there is no point in continuing [2024-06-22 01:16:10] 2024-06-22 05:13:26,387 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-22 01:16:10] 2024-06-22 05:13:28,468 | INFO | monitor loop #42: job 0:6240458604 is in state 'stageout' [2024-06-22 01:16:10] 2024-06-22 05:13:30,973 | INFO | monitor loop #43: job 0:6240458604 is in state 'stageout' [2024-06-22 01:16:10] 2024-06-22 05:13:33,481 | INFO | monitor loop #44: job 0:6240458604 is in state 'stageout' [2024-06-22 01:16:10] 2024-06-22 05:13:35,986 | INFO | monitor loop #45: job 0:6240458604 is in state 'stageout' [2024-06-22 01:16:10] 2024-06-22 05:13:36,048 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-06-22 01:16:10] 2024-06-22 05:13:36,048 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-06-22 01:16:10] 2024-06-22 05:13:36,049 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-06-22 01:16:10] 2024-06-22 05:13:36,049 | INFO | will abort loop [2024-06-22 01:16:10] 2024-06-22 05:13:36,211 | INFO | all data control threads have been joined [2024-06-22 01:16:10] 2024-06-22 05:13:36,672 | INFO | all payload control threads have been joined [2024-06-22 01:16:10] 2024-06-22 05:13:36,770 | INFO | found 1 job(s) in 20 queues [2024-06-22 01:16:10] 2024-06-22 05:13:36,770 | INFO | aborting job 6240458604 [2024-06-22 01:16:10] 2024-06-22 05:13:36,935 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-06-22 01:16:10] 2024-06-22 05:13:36,935 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-06-22 01:16:10] 2024-06-22 05:13:37,054 | INFO | [job] job monitor thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,062 | INFO | [payload] execute_payloads thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,094 | INFO | [job] retrieve thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,218 | INFO | [data] control thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,448 | INFO | all job control threads have been joined [2024-06-22 01:16:10] 2024-06-22 05:13:37,678 | INFO | [payload] control thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,718 | INFO | [payload] run_realtimelog thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,748 | INFO | [job] validate thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:37,907 | INFO | [payload] failed_post thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:38,024 | INFO | [data] copytool_in thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:38,174 | INFO | [job] create_data_payload thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:38,249 | INFO | [payload] validate_post thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:38,362 | INFO | [payload] validate_pre thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:38,454 | INFO | [job] control thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:39,374 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-06-22 01:16:10] 2024-06-22 05:13:43,388 | INFO | [data] queue_monitor thread has finished [2024-06-22 01:16:10] 2024-06-22 05:13:57,150 | INFO | job 6240458604 has state=failed [2024-06-22 01:16:10] 2024-06-22 05:13:57,150 | INFO | preparing for final server update for job 6240458604 in state='failed' [2024-06-22 01:16:10] 2024-06-22 05:13:58,068 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-06-22 01:16:10] 2024-06-22 05:13:58,068 | INFO | [monitor] control thread has ended [2024-06-22 01:16:10] 2024-06-22 05:13:58,938 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:00,988 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:03,000 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:05,014 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:07,028 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:09,040 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:11,053 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:13,064 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:15,078 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:17,098 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:19,109 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:21,120 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:23,134 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:25,148 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:27,160 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:29,194 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:31,208 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:33,224 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:35,234 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:37,248 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:39,260 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:41,287 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:43,298 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:45,309 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:47,320 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:49,333 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:51,344 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:53,356 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:55,368 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:57,380 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:14:59,408 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:01,422 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:03,434 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:05,444 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:07,455 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:09,468 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:11,480 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:13,494 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:15,508 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:17,520 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:19,534 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:21,548 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:23,568 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:25,580 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:27,591 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:29,604 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:31,618 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:33,629 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:35,640 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:37,652 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:39,664 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:41,675 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:43,688 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:45,700 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:47,714 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:49,728 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:51,739 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | INFO | proceeding with final server update [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | WARNING | path does not exist: /tmp/boinchome/slots/5/PanDA_Pilot-6240458604/memory_monitor_output.txt [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | INFO | this job has now completed (state=failed) [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | INFO | job 6240458604 has failed - writing final server update [2024-06-22 01:16:10] 2024-06-22 05:15:52,438 | WARNING | making sure that job.state is set to failed since a pilot error code is set [2024-06-22 01:16:10] 2024-06-22 05:15:52,439 | INFO | payload/TRF did not report the number of read events [2024-06-22 01:16:10] 2024-06-22 05:15:52,445 | INFO | executing command: lscpu [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run [2024-06-22 01:16:10] self._target(**self.kwargs) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2566, in queue_monitor [2024-06-22 01:16:10] update_server(job, args) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2615, in update_server [2024-06-22 01:16:10] send_state(job, args, job.state, metadata=metadata) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 418, in send_state [2024-06-22 01:16:10] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 745, in get_data_structure [2024-06-22 01:16:10] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-06-22 01:16:10] ec, stdout = lscpu() [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-06-22 01:16:10] ec, stdout, _ = execute(cmd) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-06-22 01:16:10] process = subprocess.Popen(exe, [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-22 01:16:10] self._execute_child(args, executable, preexec_fn, close_fds, [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-22 01:16:10] raise child_exception_type(errno_num, err_msg, err_filename) [2024-06-22 01:16:10] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f3a4c00c980>) [2024-06-22 01:16:10] Traceback (most recent call last): [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run [2024-06-22 01:16:10] self._target(**self.kwargs) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2566, in queue_monitor [2024-06-22 01:16:10] update_server(job, args) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2615, in update_server [2024-06-22 01:16:10] send_state(job, args, job.state, metadata=metadata) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 418, in send_state [2024-06-22 01:16:10] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 745, in get_data_structure [2024-06-22 01:16:10] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-06-22 01:16:10] ec, stdout = lscpu() [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-06-22 01:16:10] ec, stdout, _ = execute(cmd) [2024-06-22 01:16:10] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-06-22 01:16:10] process = subprocess.Popen(exe, [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-22 01:16:10] self._execute_child(args, executable, preexec_fn, close_fds, [2024-06-22 01:16:10] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-22 01:16:10] raise child_exception_type(errno_num, err_msg, err_filename) [2024-06-22 01:16:10] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-22 01:16:10] [2024-06-22 01:16:10] None [2024-06-22 01:16:10] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-06-22 01:16:10] setting graceful stop in 10 s since there is no point in continuing [2024-06-22 01:16:10] 2024-06-22 05:15:53,751 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:55,763 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:57,774 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:15:59,784 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:16:01,791 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139888523376448)>', '<ExcThread(queue_monitor, started 139887906887424)>'] [2024-06-22 01:16:10] 2024-06-22 05:16:03,802 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139888523376448)>']) [2024-06-22 01:16:10] 2024-06-22 05:16:08,828 | INFO | all workflow threads have been joined [2024-06-22 01:16:10] 2024-06-22 05:16:08,828 | INFO | end of generic workflow (traces error code: 0) [2024-06-22 01:16:10] 2024-06-22 05:16:08,832 | INFO | traces error code: 0 [2024-06-22 01:16:10] 2024-06-22 05:16:08,832 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] ==== pilot stdout END ==== [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] ==== wrapper stdout RESUME ==== [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] pilotpid: 69988 [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] Pilot exit status: 0 [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 949: xargs: command not found [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] pandaids: [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] No supervise_pilot CHILD process found [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] Test setup, not cleaning [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] ==== wrapper stdout END ==== [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] ==== wrapper stderr END ==== [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-22 01:16:10] apfmon messages muted [2024-06-22 01:16:10] *** Error codes and diagnostics *** [2024-06-22 01:16:10] *** Listing of results directory *** [2024-06-22 01:16:10] total 585496 [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 469766 Jun 21 18:41 pilot3.tar.gz [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 5654 Jun 21 18:42 queuedata.json [2024-06-22 01:16:10] -rwx------ 1 boincer umatlas 32308 Jun 21 18:44 runpilot2-wrapper.sh [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 100 Jun 22 01:08 wrapper_26015_x86_64-pc-linux-gnu [2024-06-22 01:16:10] -rwxr-xr-x 1 boincer umatlas 7986 Jun 22 01:08 run_atlas [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 105 Jun 22 01:08 job.xml [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 595935295 Jun 22 01:09 EVNT.40024021._000007.pool.root.1 [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 17537 Jun 22 01:09 start_atlas.sh [2024-06-22 01:16:10] drwxrwx--x 2 boincer umatlas 4096 Jun 22 01:09 shared [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 482493 Jun 22 01:09 input.tar.gz [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 0 Jun 22 01:09 boinc_lockfile [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 2513 Jun 22 01:09 pandaJob.out [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 424 Jun 22 01:09 setup.sh.local [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 1025953 Jun 22 01:10 agis_schedconf.cvmfs.json [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 0 Jun 22 01:10 agis_ddmendpoints.agis.ALL.json [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 1321363 Jun 22 01:10 cric_ddmendpoints.json [2024-06-22 01:16:10] drwx------ 4 boincer umatlas 4096 Jun 22 01:10 pilot3 [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 545 Jun 22 01:12 heartbeat.json [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 95 Jun 22 01:12 pilot_heartbeat.json [2024-06-22 01:16:10] drwxrwx--- 2 boincer umatlas 4096 Jun 22 01:13 PanDA_Pilot-6240458604 [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 6296 Jun 22 01:14 init_data.xml [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 524 Jun 22 01:15 boinc_task_state.xml [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 43111 Jun 22 01:16 pilotlog.txt [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 65027 Jun 22 01:16 log.40024023._001517.job.log.1 [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 428 Jun 22 01:16 runtime_log [2024-06-22 01:16:10] -rw------- 1 boincer umatlas 609 Jun 22 01:16 i9YMDmxA2e5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmGCnKDm5snaom.diag [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 8192 Jun 22 01:16 boinc_mmap_file [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 22 Jun 22 01:16 wrapper_checkpoint.txt [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 11289 Jun 22 01:16 runtime_log.err [2024-06-22 01:16:10] -rw-r--r-- 1 boincer umatlas 27981 Jun 22 01:16 stderr.txt [2024-06-22 01:16:10] No HITS result produced [2024-06-22 01:16:10] *** Contents of shared directory: *** [2024-06-22 01:16:10] total 582468 [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 595935295 Jun 22 01:09 ATLAS.root_0 [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 17537 Jun 22 01:09 start_atlas.sh [2024-06-22 01:16:10] -rw-r--r-- 2 boincer umatlas 482493 Jun 22 01:09 input.tar.gz 01:16:11 (55858): run_atlas exited; CPU time 14.099643 01:16:11 (55858): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>i9YMDmxA2e5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmGCnKDm5snaom_0_r833472567_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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