Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:43:01 (3157403): wrapper (7.7.26015): starting
20:43:01 (3157403): wrapper: running run_atlas (--nthreads 4)
[2024-06-22 20:43:01] Arguments: --nthreads 4
[2024-06-22 20:43:01] Threads: 4
[2024-06-22 20:43:01] Checking for CVMFS
[2024-06-22 20:43:01] No cvmfs_config command found, will try listing directly
[2024-06-22 20:43:01] CVMFS is ok
[2024-06-22 20:43:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-22 20:43:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-22 20:43:01] Further information can be found at the LHC@home message board.
[2024-06-22 20:43:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 20:43:01] Checking for apptainer binary...
[2024-06-22 20:43:01] which: no apptainer in ((null))
[2024-06-22 20:43:01] apptainer is not installed, using version from CVMFS
[2024-06-22 20:43:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 20:43:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-06-22 20:43:02] apptainer works
[2024-06-22 20:43:02] Set ATHENA_PROC_NUMBER=4
[2024-06-22 20:43:02] Set ATHENA_CORE_NUMBER=4
[2024-06-22 20:43:02] Starting ATLAS job with PandaID=6240310111
[2024-06-22 20:43:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 20:46:26]  *** The last 200 lines of the pilot log: ***
[2024-06-22 20:46:26] 2024-06-22 18:46:11,731 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-22 20:46:26] 2024-06-22 18:46:11,731 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6240310111/memory_monitor_summary.json (trf name=prmon)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard info from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard memory fields from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | WARNING  | GPU info not found in prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | found no stored workdir sizes
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | INFO     | will not add max space = 0 B to job metrics
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | WARNING  | wrong length of table data, x=[1719081817.0], y=[614.0] (must be same and length>=4)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . Timing measurements:
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . get job = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . initial setup = 1 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . payload setup = 5 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . stage-in = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . payload execution = 16 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . stage-out = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . log creation = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6240310111/pilotlog.txt
[2024-06-22 20:46:26] 2024-06-22 18:46:11,750 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2024-06-22 20:46:26] - Log from pilotlog.txt -
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard info from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard memory fields from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | WARNING  | GPU info not found in prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | found no stored workdir sizes
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | INFO     | will not add max space = 0 B to job metrics
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | WARNING  | wrong length of table data, x=[1719081817.0], y=[614.0] (must be same and length>=4)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . Timing measurements:
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . get job = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . initial setup = 1 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . payload setup = 5 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . stage-in = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . payload execution = 16 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . stage-out = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . log creation = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6240310111/pilotlog.txt
[2024-06-22 20:46:26] 2024-06-22 18:46:11,751 | WARNING  | 
[2024-06-22 20:46:26] [begin log extracts]
[2024-06-22 20:46:26] - Log from pilotlog.txt -
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard info from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | INFO     | extracted standard memory fields from prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,732 | WARNING  | GPU info not found in prmon json
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | WARNING  | found no stored workdir sizes
[2024-06-22 20:46:26] 2024-06-22 18:46:11,733 | INFO     | will not add max space = 0 B to job metrics
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | WARNING  | wrong length of table data, x=[1719081817.0], y=[614.0] (must be same and length>=4)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . Timing measurements:
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . get job = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . initial setup = 1 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . payload setup = 5 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,734 | INFO     | . stage-in = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . payload execution = 16 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . stage-out = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | . log creation = 0 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | ..............................
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-22 20:46:26] 2024-06-22 18:46:11,735 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6240310111/pilotlog.txt
[2024-06-22 20:46:26] [end log extracts]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,751 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,751 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-06-22 20:43:44,771 CRITICAL Transform executor raised TransformValidationExcep
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | 
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | job summary report
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | --------------------------------------------------
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | PanDA job id: 6240310111
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | task id: 38920995
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-06-22 20:43:44,771 CRITICAL Transform executor raised TransformValidationExceptio
[2024-06-22 20:46:26] 2024-06-22 18:46:11,861 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | pilot state: failed 
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | transexitcode: 65
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | exeerrorcode: 65
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | exitcode: 65
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | cpuconsumptiontime: 20 s
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | nevents: 0
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | neventsw: 0
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | pid: 3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | pgrp: 3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:11,862 | INFO     | corecount: 4
[2024-06-22 20:46:26] 2024-06-22 18:46:11,863 | INFO     | event service: False
[2024-06-22 20:46:26] 2024-06-22 18:46:11,863 | INFO     | sizes: {0: 2387054, 4: 2387260, 11: 2387288, 41: 2410360, 42: 2414594, 45: 2414622, 164: 2414892}
[2024-06-22 20:46:26] 2024-06-22 18:46:11,863 | INFO     | --------------------------------------------------
[2024-06-22 20:46:26] 2024-06-22 18:46:11,863 | INFO     | 
[2024-06-22 20:46:26] 2024-06-22 18:46:11,863 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,886 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,887 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 20:46:26] 2024-06-22 18:46:11,887 | INFO     | job 6240310111 has completed (purged errors)
[2024-06-22 20:46:26] 2024-06-22 18:46:11,887 | INFO     | overall cleanup function is called
[2024-06-22 20:46:26] 2024-06-22 18:46:12,893 | INFO     | --- collectZombieJob: --- 10, [3181449]
[2024-06-22 20:46:26] 2024-06-22 18:46:12,893 | INFO     | zombie collector waiting for pid 3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:12,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 20:46:26] 2024-06-22 18:46:13,899 | INFO     | collected zombie processes
[2024-06-22 20:46:26] 2024-06-22 18:46:13,899 | INFO     | will now attempt to kill all subprocesses of pid=3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:14,048 | INFO     | process IDs to be killed: [3181449] (in reverse order)
[2024-06-22 20:46:26] 2024-06-22 18:46:14,181 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 20:46:26] 2024-06-22 18:46:14,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 20:46:26] 2024-06-22 18:46:14,195 | INFO     | did not find any defunct processes belonging to 3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:14,206 | INFO     | did not find any defunct processes belonging to 3181449
[2024-06-22 20:46:26] 2024-06-22 18:46:14,206 | INFO     | ready for new job
[2024-06-22 20:46:26] 2024-06-22 18:46:14,206 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 20:46:26] 2024-06-22 18:46:14,207 | INFO     | *************************************
[2024-06-22 20:46:26] 2024-06-22 18:46:14,208 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 20:46:26] 2024-06-22 18:46:14,208 | INFO     | *************************************
[2024-06-22 20:46:26] 2024-06-22 18:46:14,208 | INFO     | 
[2024-06-22 20:46:26] 2024-06-22 18:46:14,214 | INFO     | architecture information:
[2024-06-22 20:46:26] 2024-06-22 18:46:14,215 | INFO     | executing command: cat /etc/os-release
[2024-06-22 20:46:26] 2024-06-22 18:46:14,230 | INFO     | cat /etc/os-release:
[2024-06-22 20:46:26] NAME="CentOS Linux"
[2024-06-22 20:46:26] VERSION="7 (Core)"
[2024-06-22 20:46:26] ID="centos"
[2024-06-22 20:46:26] ID_LIKE="rhel fedora"
[2024-06-22 20:46:26] VERSION_ID="7"
[2024-06-22 20:46:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 20:46:26] ANSI_COLOR="0;31"
[2024-06-22 20:46:26] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 20:46:26] HOME_URL="https://www.centos.org/"
[2024-06-22 20:46:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 20:46:26] 
[2024-06-22 20:46:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 20:46:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 20:46:26] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 20:46:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 20:46:26] 
[2024-06-22 20:46:26] 2024-06-22 18:46:14,230 | INFO     | *************************************
[2024-06-22 20:46:26] 2024-06-22 18:46:14,731 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2024-06-22 20:46:26] 2024-06-22 18:46:14,759 | INFO     | sufficient remaining disk space (3174102466560 B)
[2024-06-22 20:46:26] 2024-06-22 18:46:14,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 20:46:26] 2024-06-22 18:46:14,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 20:46:26] 2024-06-22 18:46:14,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 20:46:26] 2024-06-22 18:46:15,246 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 20:46:26] 2024-06-22 18:46:15,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 20:46:26] 2024-06-22 18:46:15,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 20:46:26] 2024-06-22 18:46:15,318 | INFO     | all data control threads have been joined
[2024-06-22 20:46:26] 2024-06-22 18:46:15,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 20:46:26] 2024-06-22 18:46:15,629 | INFO     | aborting loop
[2024-06-22 20:46:26] 2024-06-22 18:46:15,669 | INFO     | all payload control threads have been joined
[2024-06-22 20:46:26] 2024-06-22 18:46:15,765 | INFO     | [job] retrieve thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:15,959 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 20:46:26] 2024-06-22 18:46:16,317 | INFO     | all job control threads have been joined
[2024-06-22 20:46:26] 2024-06-22 18:46:16,324 | INFO     | [data] control thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,500 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,634 | INFO     | [job] job monitor thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,675 | INFO     | [payload] control thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,766 | INFO     | [data] copytool_out thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 20:46:26] 2024-06-22 18:46:16,941 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:16,985 | INFO     | [payload] failed_post thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,021 | INFO     | [job] validate thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,041 | INFO     | [data] copytool_in thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,219 | INFO     | [payload] validate_post thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,239 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,323 | INFO     | [job] control thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:17,877 | INFO     | [job] queue monitor thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:20,059 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 20:46:26] 2024-06-22 18:46:20,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47529331287104)>', '<ExcThread(monitor, started 47529597097728)>']
[2024-06-22 20:46:26] 2024-06-22 18:46:21,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 20:46:26] 2024-06-22 18:46:21,278 | INFO     | [monitor] control thread has ended
[2024-06-22 20:46:26] 2024-06-22 18:46:25,678 | INFO     | all workflow threads have been joined
[2024-06-22 20:46:26] 2024-06-22 18:46:25,679 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 20:46:26] 2024-06-22 18:46:25,679 | INFO     | traces error code: 0
[2024-06-22 20:46:26] 2024-06-22 18:46:25,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 20:46:26] 2024-06-22 18:46:25,794 [wrapper] ==== pilot stdout END ====
[2024-06-22 20:46:26] 2024-06-22 18:46:25,797 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 20:46:26] 2024-06-22 18:46:25,800 [wrapper] pilotpid: 3169874
[2024-06-22 20:46:26] 2024-06-22 18:46:25,802 [wrapper] Pilot exit status: 0
[2024-06-22 20:46:26] 2024-06-22 18:46:25,811 [wrapper] pandaids: 6240310111
[2024-06-22 20:46:26] 2024-06-22 18:46:25,912 [wrapper] cleanup supervisor_pilot 3169897 3169876
[2024-06-22 20:46:26] 2024-06-22 18:46:25,914 [wrapper] Test setup, not cleaning
[2024-06-22 20:46:26] 2024-06-22 18:46:25,916 [wrapper] ==== wrapper stdout END ====
[2024-06-22 20:46:26] 2024-06-22 18:46:25,918 [wrapper] ==== wrapper stderr END ====
[2024-06-22 20:46:26] 2024-06-22 18:46:25,923 [wrapper] apfmon messages muted
[2024-06-22 20:46:26]  *** Error codes and diagnostics ***
[2024-06-22 20:46:26]     "exeErrorCode": 65,
[2024-06-22 20:46:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2024-06-22 20:46:26]     "pilotErrorCode": 1305,
[2024-06-22 20:46:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-06-22 20:43:44,771 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2024-06-22 20:46:26]  *** Listing of results directory ***
[2024-06-22 20:46:26] total 618216
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc    469766 Jun 21 23:05 pilot3.tar.gz
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc      5654 Jun 21 23:16 queuedata.json
[2024-06-22 20:46:26] -rwx------ 1 boinc boinc     32308 Jun 21 23:17 runpilot2-wrapper.sh
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc       100 Jun 22 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 20:46:26] -rwxr-xr-x 1 boinc boinc      7986 Jun 22 20:06 run_atlas
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc       105 Jun 22 20:06 job.xml
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc 630355632 Jun 22 20:43 EVNT.38776180._000983.pool.root.1
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc      6644 Jun 22 20:43 init_data.xml
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc     17537 Jun 22 20:43 start_atlas.sh
[2024-06-22 20:46:26] drwxrwx--x 2 boinc boinc      4096 Jun 22 20:43 shared
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc    482514 Jun 22 20:43 input.tar.gz
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc         0 Jun 22 20:43 boinc_lockfile
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc      2614 Jun 22 20:43 pandaJob.out
[2024-06-22 20:46:26] -rw------- 1 boinc boinc       424 Jun 22 20:43 setup.sh.local
[2024-06-22 20:46:26] -rw------- 1 boinc boinc         0 Jun 22 20:43 agis_schedconf.cvmfs.json
[2024-06-22 20:46:26] -rw------- 1 boinc boinc         0 Jun 22 20:43 agis_schedconf.agis.BOINC_MCORE.json
[2024-06-22 20:46:26] -rw------- 1 boinc boinc         0 Jun 22 20:43 agis_ddmendpoints.agis.ALL.json
[2024-06-22 20:46:26] -rw------- 1 boinc boinc   1321363 Jun 22 20:43 cric_ddmendpoints.json
[2024-06-22 20:46:26] drwx------ 4 boinc boinc      4096 Jun 22 20:43 pilot3
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc       523 Jun 22 20:43 boinc_task_state.xml
[2024-06-22 20:46:26] -rw------- 1 boinc boinc       945 Jun 22 20:43 memory_monitor_summary.json
[2024-06-22 20:46:26] -rw------- 1 boinc boinc     19826 Jun 22 20:44 log.38920995._057707.job.log.tgz.1
[2024-06-22 20:46:26] -rw------- 1 boinc boinc        95 Jun 22 20:46 pilot_heartbeat.json
[2024-06-22 20:46:26] -rw------- 1 boinc boinc      8312 Jun 22 20:46 heartbeat.json
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc      8192 Jun 22 20:46 boinc_mmap_file
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc        22 Jun 22 20:46 wrapper_checkpoint.txt
[2024-06-22 20:46:26] -rw------- 1 boinc boinc      4223 Jun 22 20:46 pilotlog.txt
[2024-06-22 20:46:26] -rw------- 1 boinc boinc     76836 Jun 22 20:46 log.38920995._057707.job.log.1
[2024-06-22 20:46:26] -rw------- 1 boinc boinc       188 Jun 22 20:46 output.list
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc       620 Jun 22 20:46 runtime_log
[2024-06-22 20:46:26] -rw------- 1 boinc boinc    112640 Jun 22 20:46 result.tar.gz
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc     11275 Jun 22 20:46 runtime_log.err
[2024-06-22 20:46:26] -rw------- 1 boinc boinc       635 Jun 22 20:46 MqVKDmjo0e5n7Olcko1bjSoqABFKDmABFKDmOtvXDm7QrKDm2ctNCo.diag
[2024-06-22 20:46:26] -rw-r--r-- 1 boinc boinc     21349 Jun 22 20:46 stderr.txt
[2024-06-22 20:46:26] No HITS result produced
[2024-06-22 20:46:26]  *** Contents of shared directory: ***
[2024-06-22 20:46:26] total 616192
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc 630355632 Jun 22 20:43 ATLAS.root_0
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc     17537 Jun 22 20:43 start_atlas.sh
[2024-06-22 20:46:26] -rw-r--r-- 2 boinc boinc    482514 Jun 22 20:43 input.tar.gz
[2024-06-22 20:46:26] -rw------- 1 boinc boinc    112640 Jun 22 20:46 result.tar.gz
20:46:27 (3157403): run_atlas exited; CPU time 19.749550
20:46:27 (3157403): called boinc_finish(0)

</stderr_txt>
]]>

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