Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 18:53:28 (527955): Detected: vboxwrapper 26206
2024-06-22 18:53:28 (527955): Detected: BOINC client v8.0.2
2024-06-22 18:53:28 (527955): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-22 18:53:28 (527955): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 18:53:28 (527955): Create VM. (boinc_1797e33c71967d3e, slot#0)
2024-06-22 18:53:29 (527955): Setting Memory Size for VM. (4600MB)
2024-06-22 18:53:29 (527955): Setting CPU Count for VM. (6)
2024-06-22 18:53:29 (527955): Setting Chipset Options for VM.
2024-06-22 18:53:29 (527955): Setting Graphics Controller Options for VM.
2024-06-22 18:53:29 (527955): Setting Boot Options for VM.
2024-06-22 18:53:29 (527955): Setting Network Configuration for NAT.
2024-06-22 18:53:30 (527955): Enabling VM Network Access.
2024-06-22 18:53:30 (527955): Disabling USB Support for VM.
2024-06-22 18:53:30 (527955): Disabling COM Port Support for VM.
2024-06-22 18:53:30 (527955): Disabling LPT Port Support for VM.
2024-06-22 18:53:30 (527955): Disabling Audio Support for VM.
2024-06-22 18:53:30 (527955): Disabling Clipboard Support for VM.
2024-06-22 18:53:31 (527955): Disabling Drag and Drop Support for VM.
2024-06-22 18:53:31 (527955): Adding storage controller(s) to VM.
2024-06-22 18:53:31 (527955): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 18:53:33 (527955): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 18:53:33 (527955): forwarding host port 40689 to guest port 80
2024-06-22 18:53:33 (527955): Enabling remote desktop for VM.
2024-06-22 18:53:33 (527955): Required extension pack not installed, remote desktop not enabled.
2024-06-22 18:53:33 (527955): Enabling shared directory for VM.
2024-06-22 18:53:33 (527955): Starting VM using VBoxManage interface. (boinc_1797e33c71967d3e, slot#0)
2024-06-22 18:53:35 (527955): Successfully started VM. (PID = '528212')
2024-06-22 18:53:35 (527955): Reporting VM Process ID to BOINC.
2024-06-22 18:53:35 (527955): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-22 18:53:35 (527955): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 18:53:35 (527955): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 18:53:35 (527955): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 18:53:35 (527955): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 18:53:35 (527955): Detected: Web Application Enabled (http://localhost:40689)
2024-06-22 18:53:35 (527955): Preference change detected
2024-06-22 18:53:35 (527955): Setting CPU throttle for VM. (50%)
2024-06-22 18:53:35 (527955): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 18:53:37 (527955): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 18:53:37 (527955): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 18:53:43 (527955): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 18:53:43 (527955): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 18:53:43 (527955): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 18:53:54 (527955): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 18:53:54 (527955): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 18:54:13 (527955): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000135 main     Log opened 2024-06-22T16:54:12.103374000Z
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000217 main     OS Product: Linux
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000240 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000258 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000276 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000277 main     Process ID: 1346
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.000277 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 18:54:13 (527955): Guest Log: 00:00:00.001960 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 18:54:14 (527955): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 18:54:14 (527955): Guest Log: [INFO] Mounting shared directory
2024-06-22 18:54:15 (527955): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 18:54:18 (527955): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 18:54:18 (527955): Guest Log: [INFO] Detected branch: prod
2024-06-22 18:54:18 (527955): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 18:54:18 (527955): Guest Log: Copying input files
2024-06-22 18:54:29 (527955): Guest Log: Copied input files into RunAtlas.
2024-06-22 18:54:29 (527955): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 18:54:29 (527955): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 18:54:29 (527955): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 18:54:29 (527955): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 18:54:38 (527955): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 18:54:39 (527955): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 18:54:39 (527955): Guest Log: 2.6.3.0 1621 0 30212 134173 3 1 3117206 4096000 0 65024 0 0 n/a 1 21 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-22 18:54:42 (527955): Guest Log: copied the webapp to /var/www
2024-06-22 18:54:42 (527955): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-22 18:54:42 (527955): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-22 18:54:43 (527955): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 18:54:43 (527955): Guest Log:  *** Starting ATLAS job. (PandaID=6240144333 taskID=38921013) ***
2024-06-22 20:32:35 (527955): Status Report: Elapsed Time: '6000.000000'
2024-06-22 20:32:35 (527955): Status Report: CPU Time: '15045.210000'
2024-06-22 22:11:36 (527955): Status Report: Elapsed Time: '12000.000000'
2024-06-22 22:11:36 (527955): Status Report: CPU Time: '34789.200000'
2024-06-22 23:50:36 (527955): Status Report: Elapsed Time: '18000.000000'
2024-06-22 23:50:36 (527955): Status Report: CPU Time: '54536.330000'
2024-06-23 01:29:37 (527955): Status Report: Elapsed Time: '24000.000000'
2024-06-23 01:29:37 (527955): Status Report: CPU Time: '74428.280000'
2024-06-23 03:08:37 (527955): Status Report: Elapsed Time: '30000.000000'
2024-06-23 03:08:37 (527955): Status Report: CPU Time: '94247.610000'
2024-06-23 04:47:38 (527955): Status Report: Elapsed Time: '36000.000000'
2024-06-23 04:47:38 (527955): Status Report: CPU Time: '114054.830000'
2024-06-23 06:26:38 (527955): Status Report: Elapsed Time: '42000.000000'
2024-06-23 06:26:38 (527955): Status Report: CPU Time: '133949.140000'
2024-06-23 07:48:36 (527955): Guest Log:  *** Job finished ***
2024-06-23 07:48:36 (527955): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:19,007 | INFO     | [data] queue_monitor thread has finished
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:25,026 | INFO     | job.realtimelogging is not enabled
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:26,130 | INFO     | [payload] run_realtimelog thread has finished
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:27,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140046929884992)>', '<ExcThread(monitor, started 140046040549120)>']
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:27,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:27,205 | INFO     | [monitor] control thread has ended
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,109 | INFO     | all workflow threads have been joined
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,109 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,110 | INFO     | traces error code: 0
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,446 [wrapper] ==== pilot stdout END ====
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,464 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,474 [wrapper] pilotpid: 6520
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,481 [wrapper] Pilot exit status: 0
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,558 [wrapper] pandaids: 6240144333
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,618 [wrapper] cleanup supervisor_pilot 21221 6521
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,623 [wrapper] Test setup, not cleaning
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,648 [wrapper] ==== wrapper stdout END ====
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,651 [wrapper] ==== wrapper stderr END ====
2024-06-23 07:48:36 (527955): Guest Log: 2024-06-23 05:48:32,659 [wrapper] apfmon messages muted
2024-06-23 07:48:36 (527955): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 07:48:36 (527955): Guest Log:     "exeErrorCode": 0,
2024-06-23 07:48:36 (527955): Guest Log:     "exeErrorDiag": "",
2024-06-23 07:48:36 (527955): Guest Log:     "pilotErrorCode": 0,
2024-06-23 07:48:36 (527955): Guest Log:     "pilotErrorDiag": "",
2024-06-23 07:48:36 (527955): Guest Log:  *** Listing of results directory ***
2024-06-23 07:48:36 (527955): Guest Log: total 349008
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 19:11 pilot3.tar.gz
2024-06-23 07:48:36 (527955): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 19:29 runpilot2-wrapper.sh
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 19:29 queuedata.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas    482525 Jun 22 16:54 input.tar.gz
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas      6646 Jun 22 16:54 init_data.xml
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 22 16:54 start_atlas.sh
2024-06-23 07:48:36 (527955): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 16:54 EVNT.38776210._000518.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas      2645 Jun 22 16:54 pandaJob.out
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 16:54 setup.sh.local
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas   1025930 Jun 22 16:55 agis_schedconf.cvmfs.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 16:55 cric_ddmendpoints.json
2024-06-23 07:48:36 (527955): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 16:55 pilot3
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas 345844774 Jun 23 05:46 HITS.38921013._052263.pool.root.1
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas        95 Jun 23 05:47 pilot_heartbeat.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas      1042 Jun 23 05:47 memory_monitor_summary.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 05:47 agis_ddmendpoints.agis.ALL.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas    566557 Jun 23 05:47 log.38921013._052263.job.log.tgz.1
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas      7743 Jun 23 05:48 heartbeat.json
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas      4652 Jun 23 05:48 pilotlog.txt
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas   3471627 Jun 23 05:48 log.38921013._052263.job.log.1
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 05:48 output.list
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 05:48 runtime_log
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas   4055040 Jun 23 05:48 result.tar.gz
2024-06-23 07:48:36 (527955): Guest Log: -rw-r--r--. 1 atlas atlas     11015 Jun 23 05:48 runtime_log.err
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas       676 Jun 23 05:48 NWzKDmU8ye5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmw2mKDmfjWqDn.diag
2024-06-23 07:48:36 (527955): Guest Log: Looking for outputfile HITS.38921013._052263.pool.root.1
2024-06-23 07:48:36 (527955): Guest Log: HITS file was successfully produced
2024-06-23 07:48:36 (527955): Guest Log: -rw-------. 1 atlas atlas 345844774 Jun 23 05:46 /home/atlas/RunAtlas/HITS.38921013._052263.pool.root.1
2024-06-23 07:48:37 (527955): Guest Log: Successfully finished the ATLAS job!
2024-06-23 07:48:37 (527955): Guest Log: Copying the results back to the shared directory!
2024-06-23 07:48:37 (527955): Guest Log:  *** Contents of shared directory: ***
2024-06-23 07:48:37 (527955): Guest Log: total 532288
2024-06-23 07:48:37 (527955): Guest Log: -rw-r--r--. 1 root root 540490222 Jun 22 16:53 ATLAS.root_0
2024-06-23 07:48:37 (527955): Guest Log: -rw-r--r--. 1 root root      6646 Jun 22 16:53 init_data.xml
2024-06-23 07:48:37 (527955): Guest Log: -rw-r--r--. 1 root root    482525 Jun 22 16:53 input.tar.gz
2024-06-23 07:48:37 (527955): Guest Log: -rw-r--r--. 1 root root   4055040 Jun 23 05:48 result.tar.gz
2024-06-23 07:48:37 (527955): Guest Log: -rw-r--r--. 1 root root     17537 Jun 22 16:53 start_atlas.sh
2024-06-23 07:48:37 (527955): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 07:48:37 (527955): VM Completion File Detected.
2024-06-23 07:48:37 (527955): Powering off VM.
2024-06-23 07:48:37 (527955): Successfully stopped VM.
2024-06-23 07:48:37 (527955): Deregistering VM. (boinc_1797e33c71967d3e, slot#0)
2024-06-23 07:48:37 (527955): Removing network bandwidth throttle group from VM.
2024-06-23 07:48:38 (527955): Removing VM from VirtualBox.
07:48:43 (527955): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN