Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 10:35:58 (708216): Detected: vboxwrapper 26206
2024-06-22 10:35:58 (708216): Detected: BOINC client v7.24.1
2024-06-22 10:35:58 (708216): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-22 10:35:58 (708216): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 10:35:58 (708216): Create VM. (boinc_fcb4372fb2a53f22, slot#0)
2024-06-22 10:35:59 (708216): Setting Memory Size for VM. (4600MB)
2024-06-22 10:35:59 (708216): Setting CPU Count for VM. (6)
2024-06-22 10:35:59 (708216): Setting Chipset Options for VM.
2024-06-22 10:35:59 (708216): Setting Graphics Controller Options for VM.
2024-06-22 10:35:59 (708216): Setting Boot Options for VM.
2024-06-22 10:36:00 (708216): Setting Network Configuration for NAT.
2024-06-22 10:36:00 (708216): Enabling VM Network Access.
2024-06-22 10:36:00 (708216): Disabling USB Support for VM.
2024-06-22 10:36:00 (708216): Disabling COM Port Support for VM.
2024-06-22 10:36:00 (708216): Disabling LPT Port Support for VM.
2024-06-22 10:36:00 (708216): Disabling Audio Support for VM.
2024-06-22 10:36:01 (708216): Disabling Clipboard Support for VM.
2024-06-22 10:36:01 (708216): Disabling Drag and Drop Support for VM.
2024-06-22 10:36:01 (708216): Adding storage controller(s) to VM.
2024-06-22 10:36:01 (708216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 10:36:03 (708216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 10:36:03 (708216): forwarding host port 38435 to guest port 80
2024-06-22 10:36:03 (708216): Enabling remote desktop for VM.
2024-06-22 10:36:03 (708216): Required extension pack not installed, remote desktop not enabled.
2024-06-22 10:36:03 (708216): Enabling shared directory for VM.
2024-06-22 10:36:04 (708216): Starting VM using VBoxManage interface. (boinc_fcb4372fb2a53f22, slot#0)
2024-06-22 10:36:05 (708216): Successfully started VM. (PID = '708470')
2024-06-22 10:36:05 (708216): Reporting VM Process ID to BOINC.
2024-06-22 10:36:05 (708216): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-22 10:36:05 (708216): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 10:36:05 (708216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 10:36:05 (708216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 10:36:05 (708216): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 10:36:05 (708216): Detected: Web Application Enabled (http://localhost:38435)
2024-06-22 10:36:05 (708216): Preference change detected
2024-06-22 10:36:05 (708216): Setting CPU throttle for VM. (50%)
2024-06-22 10:36:05 (708216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 10:36:07 (708216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 10:36:07 (708216): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 10:36:12 (708216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 10:36:12 (708216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 10:36:12 (708216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 10:36:23 (708216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 10:36:23 (708216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 10:36:37 (708216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.000213 main     Log opened 2024-06-22T08:36:35.181637000Z
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.000352 main     OS Product: Linux
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.001032 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.001094 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.001136 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.001138 main     Process ID: 1326
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.001139 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 10:36:37 (708216): Guest Log: 00:00:00.003232 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 10:36:37 (708216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 10:36:37 (708216): Guest Log: [INFO] Mounting shared directory
2024-06-22 10:36:38 (708216): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 10:36:41 (708216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 10:36:41 (708216): Guest Log: [INFO] Detected branch: prod
2024-06-22 10:36:42 (708216): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 10:36:42 (708216): Guest Log: Copying input files
2024-06-22 10:36:50 (708216): Guest Log: Copied input files into RunAtlas.
2024-06-22 10:36:50 (708216): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 10:36:50 (708216): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 10:36:50 (708216): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 10:36:50 (708216): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 10:36:59 (708216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 10:36:59 (708216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 10:36:59 (708216): Guest Log: 2.6.3.0 1605 0 32256 134159 3 1 3117206 4096000 0 65024 0 0 n/a 1 23 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-22 10:37:02 (708216): Guest Log: copied the webapp to /var/www
2024-06-22 10:37:02 (708216): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-22 10:37:02 (708216): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-22 10:37:03 (708216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 10:37:03 (708216): Guest Log:  *** Starting ATLAS job. (PandaID=6239788580 taskID=40024023) ***
2024-06-22 12:15:06 (708216): Status Report: Elapsed Time: '6000.000000'
2024-06-22 12:15:06 (708216): Status Report: CPU Time: '15048.930000'
2024-06-22 13:54:06 (708216): Status Report: Elapsed Time: '12000.000000'
2024-06-22 13:54:06 (708216): Status Report: CPU Time: '34390.820000'
2024-06-22 15:33:07 (708216): Status Report: Elapsed Time: '18000.000000'
2024-06-22 15:33:07 (708216): Status Report: CPU Time: '53711.160000'
2024-06-22 15:52:46 (708216): Guest Log:  *** Job finished ***
2024-06-22 15:52:46 (708216): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:35,204 | INFO     | [job] create_data_payload thread has finished
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:36,116 | INFO     | [job] queue monitor thread has finished
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:38,468 | INFO     | [data] queue_monitor thread has finished
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:39,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405158328128)>', '<ExcThread(monitor, started 140404494169856)>']
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:39,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:39,839 | INFO     | [monitor] control thread has ended
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,717 | INFO     | all workflow threads have been joined
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,718 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,718 | INFO     | traces error code: 0
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,827 [wrapper] ==== pilot stdout END ====
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,831 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,836 [wrapper] pilotpid: 6535
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,842 [wrapper] Pilot exit status: 0
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,868 [wrapper] pandaids: 6239788580
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,910 [wrapper] cleanup supervisor_pilot 18927 6536
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,918 [wrapper] Test setup, not cleaning
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,925 [wrapper] ==== wrapper stdout END ====
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,931 [wrapper] ==== wrapper stderr END ====
2024-06-22 15:52:46 (708216): Guest Log: 2024-06-22 13:52:44,979 [wrapper] apfmon messages muted
2024-06-22 15:52:46 (708216): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 15:52:46 (708216): Guest Log:     "exeErrorCode": 0,
2024-06-22 15:52:46 (708216): Guest Log:     "exeErrorDiag": "",
2024-06-22 15:52:46 (708216): Guest Log:     "pilotErrorCode": 0,
2024-06-22 15:52:46 (708216): Guest Log:     "pilotErrorDiag": "",
2024-06-22 15:52:46 (708216): Guest Log:  *** Listing of results directory ***
2024-06-22 15:52:46 (708216): Guest Log: total 257164
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 13:53 pilot3.tar.gz
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 14:02 queuedata.json
2024-06-22 15:52:46 (708216): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 14:04 runpilot2-wrapper.sh
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas      6649 Jun 22 08:36 init_data.xml
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 22 08:36 start_atlas.sh
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas    482493 Jun 22 08:36 input.tar.gz
2024-06-22 15:52:46 (708216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 08:36 EVNT.40024021._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas      2513 Jun 22 08:37 pandaJob.out
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 08:37 setup.sh.local
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas   1025969 Jun 22 08:39 agis_schedconf.cvmfs.json
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 08:39 cric_ddmendpoints.json
2024-06-22 15:52:46 (708216): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 08:39 pilot3
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas 257025323 Jun 22 13:51 HITS.40024023._001405.pool.root.1
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 13:51 pilot_heartbeat.json
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas      1031 Jun 22 13:52 memory_monitor_summary.json
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 13:52 agis_ddmendpoints.agis.ALL.json
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas    362098 Jun 22 13:52 log.40024023._001405.job.log.tgz.1
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas      7738 Jun 22 13:52 heartbeat.json
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 22 13:52 pilotlog.txt
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas   1060195 Jun 22 13:52 log.40024023._001405.job.log.1
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 13:52 output.list
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 13:52 runtime_log
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas   1443840 Jun 22 13:52 result.tar.gz
2024-06-22 15:52:46 (708216): Guest Log: -rw-r--r--. 1 atlas atlas     11024 Jun 22 13:52 runtime_log.err
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas       677 Jun 22 13:52 CYAMDm23te5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmN8XKDmHcixMn.diag
2024-06-22 15:52:46 (708216): Guest Log: Looking for outputfile HITS.40024023._001405.pool.root.1
2024-06-22 15:52:46 (708216): Guest Log: HITS file was successfully produced
2024-06-22 15:52:46 (708216): Guest Log: -rw-------. 1 atlas atlas 257025323 Jun 22 13:51 /home/atlas/RunAtlas/HITS.40024023._001405.pool.root.1
2024-06-22 15:52:46 (708216): Guest Log: Successfully finished the ATLAS job!
2024-06-22 15:52:46 (708216): Guest Log: Copying the results back to the shared directory!
2024-06-22 15:52:46 (708216): Guest Log:  *** Contents of shared directory: ***
2024-06-22 15:52:47 (708216): Guest Log: total 586668
2024-06-22 15:52:47 (708216): Guest Log: -rw-r--r--. 1 root root 598785598 Jun 22 08:35 ATLAS.root_0
2024-06-22 15:52:47 (708216): Guest Log: -rw-r--r--. 1 root root      6649 Jun 22 08:35 init_data.xml
2024-06-22 15:52:47 (708216): Guest Log: -rw-r--r--. 1 root root    482493 Jun 22 08:35 input.tar.gz
2024-06-22 15:52:47 (708216): Guest Log: -rw-r--r--. 1 root root   1443840 Jun 22 13:52 result.tar.gz
2024-06-22 15:52:47 (708216): Guest Log: -rw-r--r--. 1 root root     17537 Jun 22 08:35 start_atlas.sh
2024-06-22 15:52:47 (708216): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 15:52:47 (708216): VM Completion File Detected.
2024-06-22 15:52:47 (708216): Powering off VM.
2024-06-22 15:52:47 (708216): Successfully stopped VM.
2024-06-22 15:52:47 (708216): Deregistering VM. (boinc_fcb4372fb2a53f22, slot#0)
2024-06-22 15:52:47 (708216): Removing network bandwidth throttle group from VM.
2024-06-22 15:52:47 (708216): Removing VM from VirtualBox.
15:52:53 (708216): called boinc_finish(0)

</stderr_txt>
]]>

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