Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:14:12 (4087445): wrapper (7.7.26015): starting
08:14:12 (4087445): wrapper: running run_atlas (--nthreads 4)
[2024-06-24 08:14:12] Arguments: --nthreads 4
[2024-06-24 08:14:12] Threads: 4
[2024-06-24 08:14:12] Checking for CVMFS
[2024-06-24 08:14:12] No cvmfs_config command found, will try listing directly
[2024-06-24 08:14:12] CVMFS is ok
[2024-06-24 08:14:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-24 08:14:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-24 08:14:12] Further information can be found at the LHC@home message board.
[2024-06-24 08:14:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-24 08:14:12] Checking for apptainer binary...
[2024-06-24 08:14:12] which: no apptainer in ((null))
[2024-06-24 08:14:12] apptainer is not installed, using version from CVMFS
[2024-06-24 08:14:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-24 08:14:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2024-06-24 08:14:14] apptainer works
[2024-06-24 08:14:14] Set ATHENA_PROC_NUMBER=4
[2024-06-24 08:14:14] Set ATHENA_CORE_NUMBER=4
[2024-06-24 08:14:14] Starting ATLAS job with PandaID=6239727126
[2024-06-24 08:14:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-24 20:46:14]  *** The last 200 lines of the pilot log: ***
[2024-06-24 20:46:14] 2024-06-24 18:45:53,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-24 20:46:14] 2024-06-24 18:45:53,773 | INFO     | fitting pss+swap vs Time
[2024-06-24 20:46:14] 2024-06-24 18:45:53,773 | INFO     | model: linear, x: [1719209700.0, 1719209761.0, 1719209822.0, 1719209883.0, 1719209944.0, 1719210005.0, 1719210066.0, 1719210127.0, 1719210188.0, 1719210249.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,773 | INFO     | sum of square deviations: 125144262690.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | sum of deviations: 99097989627.00006
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | mean x: 1719232209.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | mean y: 2373179.2706359946
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | -- intersect: -1359035262.0889413
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | intersect: -1359035262.0889413
[2024-06-24 20:46:14] 2024-06-24 18:45:53,781 | INFO     | chi2: 4.695700593436699
[2024-06-24 20:46:14] 2024-06-24 18:45:53,782 | INFO     | model: linear, x: [1719209700.0, 1719209761.0, 1719209822.0, 1719209883.0, 1719209944.0, 1719210005.0, 1719210066.0, 1719210127.0, 1719210188.0, 1719210249.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,782 | INFO     | sum of square deviations: 122621266547.5
[2024-06-24 20:46:14] 2024-06-24 18:45:53,789 | INFO     | sum of deviations: 145441421233.99994
[2024-06-24 20:46:14] 2024-06-24 18:45:53,789 | INFO     | mean x: 1719232056.5
[2024-06-24 20:46:14] 2024-06-24 18:45:53,789 | INFO     | mean y: 2375964.727520436
[2024-06-24 20:46:14] 2024-06-24 18:45:53,789 | INFO     | -- intersect: -2036809902.1999848
[2024-06-24 20:46:14] 2024-06-24 18:45:53,790 | INFO     | intersect: -2036809902.1999848
[2024-06-24 20:46:14] 2024-06-24 18:45:53,790 | INFO     | chi2: 3.9108168560302596
[2024-06-24 20:46:14] 2024-06-24 18:45:53,790 | INFO     | current chi2=3.9108168560302596 (change=16.71494427271389 %)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,790 | INFO     | right removable region: 733
[2024-06-24 20:46:14] 2024-06-24 18:45:53,791 | INFO     | model: linear, x: [1719210005.0, 1719210066.0, 1719210127.0, 1719210188.0, 1719210249.0, 1719210310.0, 1719210371.0, 1719210432.0, 1719210493.0, 1719210554.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,791 | INFO     | sum of square deviations: 122621266547.5
[2024-06-24 20:46:14] 2024-06-24 18:45:53,798 | INFO     | sum of deviations: -73988386295.50009
[2024-06-24 20:46:14] 2024-06-24 18:45:53,798 | INFO     | mean x: 1719232361.5
[2024-06-24 20:46:14] 2024-06-24 18:45:53,798 | INFO     | mean y: 2383630.8215258857
[2024-06-24 20:46:14] 2024-06-24 18:45:53,798 | INFO     | -- intersect: 1039750408.0200957
[2024-06-24 20:46:14] 2024-06-24 18:45:53,798 | INFO     | intersect: 1039750408.0200957
[2024-06-24 20:46:14] 2024-06-24 18:45:53,799 | INFO     | chi2: 2.344361614977795
[2024-06-24 20:46:14] 2024-06-24 18:45:53,799 | INFO     | current chi2=2.344361614977795 (change=50.07429523393018 %)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,799 | INFO     | model: linear, x: [1719210310.0, 1719210371.0, 1719210432.0, 1719210493.0, 1719210554.0, 1719210615.0, 1719210676.0, 1719210737.0, 1719210798.0, 1719210859.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,800 | INFO     | sum of square deviations: 120132410580.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,807 | INFO     | sum of deviations: -197140280497.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,807 | INFO     | mean x: 1719232514.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,807 | INFO     | mean y: 2391176.526748971
[2024-06-24 20:46:14] 2024-06-24 18:45:53,807 | INFO     | -- intersect: 2823694590.094882
[2024-06-24 20:46:14] 2024-06-24 18:45:53,807 | INFO     | intersect: 2823694590.094882
[2024-06-24 20:46:14] 2024-06-24 18:45:53,808 | INFO     | chi2: 1.236254047986106
[2024-06-24 20:46:14] 2024-06-24 18:45:53,808 | INFO     | current chi2=1.236254047986106 (change=47.2669216179 %)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,808 | INFO     | model: linear, x: [1719210615.0, 1719210676.0, 1719210737.0, 1719210798.0, 1719210859.0, 1719210920.0, 1719210981.0, 1719211042.0, 1719211103.0, 1719211164.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,808 | INFO     | sum of square deviations: 117677462225.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,815 | INFO     | sum of deviations: -208414136956.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,815 | INFO     | mean x: 1719232666.5
[2024-06-24 20:46:14] 2024-06-24 18:45:53,815 | INFO     | mean y: 2391872.502762431
[2024-06-24 20:46:14] 2024-06-24 18:45:53,815 | INFO     | -- intersect: 3047260325.988483
[2024-06-24 20:46:14] 2024-06-24 18:45:53,816 | INFO     | intersect: 3047260325.988483
[2024-06-24 20:46:14] 2024-06-24 18:45:53,816 | INFO     | chi2: 1.1921822941567661
[2024-06-24 20:46:14] 2024-06-24 18:45:53,816 | INFO     | current chi2=1.1921822941567661 (change=3.564943136172859 %)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,816 | INFO     | left removable region: 30
[2024-06-24 20:46:14] 2024-06-24 18:45:53,817 | INFO     | model: linear, x: [1719211530.0, 1719211591.0, 1719211652.0, 1719211713.0, 1719211774.0, 1719211835.0, 1719211896.0, 1719211957.0, 1719212018.0, 1719212079.0, 1719
[2024-06-24 20:46:14] 2024-06-24 18:45:53,817 | INFO     | sum of square deviations: 107731701792.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,823 | INFO     | sum of deviations: -105770976046.99997
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | mean x: 1719232941.0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | mean y: 2391257.238975818
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | -- intersect: 1690334018.7189384
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | intersect: 1690334018.7189384
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | chi2: 0.3304581658925241
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | -- intersect: 1690334018.7189384
[2024-06-24 20:46:14] 2024-06-24 18:45:53,824 | INFO     | current memory leak: -0.98 B/s (using 703 data points, chi2=0.33)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | ..............................
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . Timing measurements:
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . get job = 0 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . initial setup = 1 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . payload setup = 8 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . stage-in = 0 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . payload execution = 45047 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . stage-out = 0 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,825 | INFO     | . log creation = 0 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,826 | INFO     | ..............................
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | 
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | job summary report
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | --------------------------------------------------
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | PanDA job id: 6239727126
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | task id: 38921013
[2024-06-24 20:46:14] 2024-06-24 18:45:53,882 | INFO     | errors: (none)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | pilot state: finished 
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | transexitcode: 0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | exeerrorcode: 0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | exeerrordiag: 
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | exitcode: 0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | exitmsg: OK
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | cpuconsumptiontime: 176208 s
[2024-06-24 20:46:14] 2024-06-24 18:45:53,883 | INFO     | nevents: 400
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | neventsw: 0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | pid: 4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | pgrp: 4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | corecount: 4
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | event service: False
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | sizes: {0: 2386899, 1: 2387098, 7: 2387304, 12: 2387332, 45059: 2432153, 45060: 2432152, 45062: 2441318, 45064: 2441374, 45069: 2441544}
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | --------------------------------------------------
[2024-06-24 20:46:14] 2024-06-24 18:45:53,884 | INFO     | 
[2024-06-24 20:46:14] 2024-06-24 18:45:53,885 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2024-06-24 20:46:14] 2024-06-24 18:45:53,901 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | job 6239727126 has completed (purged errors)
[2024-06-24 20:46:14] 2024-06-24 18:45:53,904 | INFO     | overall cleanup function is called
[2024-06-24 20:46:14] 2024-06-24 18:45:54,912 | INFO     | --- collectZombieJob: --- 10, [4098629]
[2024-06-24 20:46:14] 2024-06-24 18:45:54,913 | INFO     | zombie collector waiting for pid 4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:54,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-24 20:46:14] 2024-06-24 18:45:55,919 | INFO     | collected zombie processes
[2024-06-24 20:46:14] 2024-06-24 18:45:55,919 | INFO     | will now attempt to kill all subprocesses of pid=4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:56,008 | INFO     | process IDs to be killed: [4098629] (in reverse order)
[2024-06-24 20:46:14] 2024-06-24 18:45:56,064 | WARNING  | found no corresponding commands to process id(s)
[2024-06-24 20:46:14] 2024-06-24 18:45:56,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-24 20:46:14] 2024-06-24 18:45:56,069 | INFO     | did not find any defunct processes belonging to 4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:56,072 | INFO     | did not find any defunct processes belonging to 4098629
[2024-06-24 20:46:14] 2024-06-24 18:45:56,072 | INFO     | ready for new job
[2024-06-24 20:46:14] 2024-06-24 18:45:56,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-24 20:46:14] 2024-06-24 18:45:56,075 | INFO     | *************************************
[2024-06-24 20:46:14] 2024-06-24 18:45:56,075 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-24 20:46:14] 2024-06-24 18:45:56,075 | INFO     | *************************************
[2024-06-24 20:46:14] 2024-06-24 18:45:56,075 | INFO     | 
[2024-06-24 20:46:14] 2024-06-24 18:45:56,076 | INFO     | architecture information:
[2024-06-24 20:46:14] 2024-06-24 18:45:56,077 | INFO     | executing command: cat /etc/os-release
[2024-06-24 20:46:14] 2024-06-24 18:45:56,089 | INFO     | cat /etc/os-release:
[2024-06-24 20:46:14] NAME="CentOS Linux"
[2024-06-24 20:46:14] VERSION="7 (Core)"
[2024-06-24 20:46:14] ID="centos"
[2024-06-24 20:46:14] ID_LIKE="rhel fedora"
[2024-06-24 20:46:14] VERSION_ID="7"
[2024-06-24 20:46:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-24 20:46:14] ANSI_COLOR="0;31"
[2024-06-24 20:46:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-24 20:46:14] HOME_URL="https://www.centos.org/"
[2024-06-24 20:46:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-24 20:46:14] 
[2024-06-24 20:46:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-24 20:46:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-24 20:46:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-24 20:46:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-24 20:46:14] 
[2024-06-24 20:46:14] 2024-06-24 18:45:56,089 | INFO     | *************************************
[2024-06-24 20:46:14] 2024-06-24 18:45:56,591 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2024-06-24 20:46:14] 2024-06-24 18:45:56,607 | INFO     | sufficient remaining disk space (1678998765568 B)
[2024-06-24 20:46:14] 2024-06-24 18:45:56,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-24 20:46:14] 2024-06-24 18:45:56,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-24 20:46:14] 2024-06-24 18:45:56,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-24 20:46:14] 2024-06-24 18:45:56,608 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-24 20:46:14] 2024-06-24 18:45:56,608 | INFO     | aborting loop
[2024-06-24 20:46:14] 2024-06-24 18:45:56,609 | INFO     | found 0 job(s) in 20 queues
[2024-06-24 20:46:14] 2024-06-24 18:45:56,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-24 20:46:14] 2024-06-24 18:45:56,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-24 20:46:14] 2024-06-24 18:45:56,758 | INFO     | all data control threads have been joined
[2024-06-24 20:46:14] 2024-06-24 18:45:57,043 | INFO     | all payload control threads have been joined
[2024-06-24 20:46:14] 2024-06-24 18:45:57,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-24 20:46:14] 2024-06-24 18:45:57,613 | INFO     | [job] retrieve thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:57,614 | INFO     | [job] job monitor thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:57,733 | INFO     | [payload] failed_post thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:57,763 | INFO     | [data] control thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,044 | INFO     | [payload] control thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,066 | INFO     | [payload] validate_post thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,122 | INFO     | all job control threads have been joined
[2024-06-24 20:46:14] 2024-06-24 18:45:58,151 | INFO     | [job] validate thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,248 | INFO     | [data] copytool_in thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,670 | INFO     | [payload] execute_payloads thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,752 | INFO     | [payload] validate_pre thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,875 | INFO     | [job] create_data_payload thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:58,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-24 20:46:14] 2024-06-24 18:45:58,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-24 20:46:14] 2024-06-24 18:45:59,069 | INFO     | [data] copytool_out thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:59,127 | INFO     | [job] control thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:45:59,897 | INFO     | [job] queue monitor thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:46:02,938 | INFO     | [data] queue_monitor thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:46:07,130 | INFO     | job.realtimelogging is not enabled
[2024-06-24 20:46:14] 2024-06-24 18:46:08,135 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-24 20:46:14] 2024-06-24 18:46:08,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47919999562816)>', '<ExcThread(monitor, started 47920190342912)>']
[2024-06-24 20:46:14] 2024-06-24 18:46:09,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-24 20:46:14] 2024-06-24 18:46:09,665 | INFO     | [monitor] control thread has ended
[2024-06-24 20:46:14] 2024-06-24 18:46:13,694 | INFO     | all workflow threads have been joined
[2024-06-24 20:46:14] 2024-06-24 18:46:13,694 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-24 20:46:14] 2024-06-24 18:46:13,695 | INFO     | traces error code: 0
[2024-06-24 20:46:14] 2024-06-24 18:46:13,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-24 20:46:14] 2024-06-24 18:46:13,764 [wrapper] ==== pilot stdout END ====
[2024-06-24 20:46:14] 2024-06-24 18:46:13,767 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-24 20:46:14] 2024-06-24 18:46:13,768 [wrapper] pilotpid: 4091680
[2024-06-24 20:46:14] 2024-06-24 18:46:13,770 [wrapper] Pilot exit status: 0
[2024-06-24 20:46:14] 2024-06-24 18:46:13,779 [wrapper] pandaids: 6239727126
[2024-06-24 20:46:14] 2024-06-24 18:46:13,817 [wrapper] cleanup supervisor_pilot  894161 4091681
[2024-06-24 20:46:14] 2024-06-24 18:46:13,819 [wrapper] Test setup, not cleaning
[2024-06-24 20:46:14] 2024-06-24 18:46:13,821 [wrapper] ==== wrapper stdout END ====
[2024-06-24 20:46:14] 2024-06-24 18:46:13,823 [wrapper] ==== wrapper stderr END ====
[2024-06-24 20:46:14] 2024-06-24 18:46:13,827 [wrapper] apfmon messages muted
[2024-06-24 20:46:14]  *** Error codes and diagnostics ***
[2024-06-24 20:46:14]     "exeErrorCode": 0,
[2024-06-24 20:46:14]     "exeErrorDiag": "",
[2024-06-24 20:46:14]     "pilotErrorCode": 0,
[2024-06-24 20:46:14]     "pilotErrorDiag": "",
[2024-06-24 20:46:14]  *** Listing of results directory ***
[2024-06-24 20:46:14] total 874332
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc    469766 Jun 21 14:42 pilot3.tar.gz
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc      5654 Jun 21 15:03 queuedata.json
[2024-06-24 20:46:14] -rwx------ 1 boinc boinc     32308 Jun 21 15:03 runpilot2-wrapper.sh
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc       100 Jun 24 08:14 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-24 20:46:14] -rwxr-xr-x 1 boinc boinc      7986 Jun 24 08:14 run_atlas
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc       105 Jun 24 08:14 job.xml
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc 539137109 Jun 24 08:14 EVNT.38776210._000733.pool.root.1
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc      6455 Jun 24 08:14 init_data.xml
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc     17537 Jun 24 08:14 start_atlas.sh
[2024-06-24 20:46:14] drwxrwx--x 2 boinc boinc      4096 Jun 24 08:14 shared
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc    482537 Jun 24 08:14 input.tar.gz
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc         0 Jun 24 08:14 boinc_lockfile
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc      2645 Jun 24 08:14 pandaJob.out
[2024-06-24 20:46:14] -rw------- 1 boinc boinc       424 Jun 24 08:14 setup.sh.local
[2024-06-24 20:46:14] -rw------- 1 boinc boinc   1018514 Jun 24 08:14 agis_schedconf.cvmfs.json
[2024-06-24 20:46:14] -rw------- 1 boinc boinc   1321363 Jun 24 08:14 cric_ddmendpoints.json
[2024-06-24 20:46:14] drwx------ 4 boinc boinc      4096 Jun 24 08:14 pilot3
[2024-06-24 20:46:14] -rw------- 1 boinc boinc 340456776 Jun 24 20:45 HITS.38921013._051860.pool.root.1
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc       532 Jun 24 20:45 boinc_task_state.xml
[2024-06-24 20:46:14] -rw------- 1 boinc boinc        95 Jun 24 20:45 pilot_heartbeat.json
[2024-06-24 20:46:14] -rw------- 1 boinc boinc      1043 Jun 24 20:45 memory_monitor_summary.json
[2024-06-24 20:46:14] -rw------- 1 boinc boinc         0 Jun 24 20:45 agis_ddmendpoints.agis.ALL.json
[2024-06-24 20:46:14] -rw------- 1 boinc boinc    691652 Jun 24 20:45 log.38921013._051860.job.log.tgz.1
[2024-06-24 20:46:14] -rw------- 1 boinc boinc      7763 Jun 24 20:45 heartbeat.json
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc        29 Jun 24 20:45 wrapper_checkpoint.txt
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc      8192 Jun 24 20:45 boinc_mmap_file
[2024-06-24 20:46:14] -rw------- 1 boinc boinc      4417 Jun 24 20:46 pilotlog.txt
[2024-06-24 20:46:14] -rw------- 1 boinc boinc   5406577 Jun 24 20:46 log.38921013._051860.job.log.1
[2024-06-24 20:46:14] -rw------- 1 boinc boinc       357 Jun 24 20:46 output.list
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc       620 Jun 24 20:46 runtime_log
[2024-06-24 20:46:14] -rw------- 1 boinc boinc   6113280 Jun 24 20:46 result.tar.gz
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc     11410 Jun 24 20:46 runtime_log.err
[2024-06-24 20:46:14] -rw------- 1 boinc boinc       661 Jun 24 20:46 OL0NDmo6se5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmBlmKDmfSBLxn.diag
[2024-06-24 20:46:14] -rw-r--r-- 1 boinc boinc     21351 Jun 24 20:46 stderr.txt
[2024-06-24 20:46:14] HITS file was successfully produced:
[2024-06-24 20:46:14] -rw------- 1 boinc boinc 340456776 Jun 24 20:45 shared/HITS.pool.root.1
[2024-06-24 20:46:14]  *** Contents of shared directory: ***
[2024-06-24 20:46:14] total 865456
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc 539137109 Jun 24 08:14 ATLAS.root_0
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc     17537 Jun 24 08:14 start_atlas.sh
[2024-06-24 20:46:14] -rw-r--r-- 2 boinc boinc    482537 Jun 24 08:14 input.tar.gz
[2024-06-24 20:46:14] -rw------- 1 boinc boinc 340456776 Jun 24 20:45 HITS.pool.root.1
[2024-06-24 20:46:14] -rw------- 1 boinc boinc   6113280 Jun 24 20:46 result.tar.gz
20:46:15 (4087445): run_atlas exited; CPU time 175818.765124
20:46:15 (4087445): called boinc_finish(0)

</stderr_txt>
]]>

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