Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 07:54:57 (54493): Detected: vboxwrapper 26206
2024-06-22 07:54:57 (54493): Detected: BOINC client v7.24.1
2024-06-22 07:54:57 (54493): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-22 07:54:57 (54493): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 07:54:57 (54493): Create VM. (boinc_34f9e5c4005a3056, slot#0)
2024-06-22 07:54:57 (54493): Setting Memory Size for VM. (4800MB)
2024-06-22 07:54:57 (54493): Setting CPU Count for VM. (8)
2024-06-22 07:54:57 (54493): Setting Chipset Options for VM.
2024-06-22 07:54:57 (54493): Setting Graphics Controller Options for VM.
2024-06-22 07:54:57 (54493): Setting Boot Options for VM.
2024-06-22 07:54:57 (54493): Setting Network Configuration for NAT.
2024-06-22 07:54:58 (54493): Enabling VM Network Access.
2024-06-22 07:54:58 (54493): Disabling USB Support for VM.
2024-06-22 07:54:58 (54493): Disabling COM Port Support for VM.
2024-06-22 07:54:58 (54493): Disabling LPT Port Support for VM.
2024-06-22 07:54:58 (54493): Disabling Audio Support for VM.
2024-06-22 07:54:58 (54493): Disabling Clipboard Support for VM.
2024-06-22 07:54:58 (54493): Disabling Drag and Drop Support for VM.
2024-06-22 07:54:58 (54493): Adding storage controller(s) to VM.
2024-06-22 07:54:58 (54493): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 07:54:59 (54493): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 07:54:59 (54493): forwarding host port 56949 to guest port 80
2024-06-22 07:54:59 (54493): Enabling remote desktop for VM.
2024-06-22 07:54:59 (54493): Required extension pack not installed, remote desktop not enabled.
2024-06-22 07:54:59 (54493): Enabling shared directory for VM.
2024-06-22 07:54:59 (54493): Starting VM using VBoxManage interface. (boinc_34f9e5c4005a3056, slot#0)
2024-06-22 07:55:00 (54493): Successfully started VM. (PID = '54747')
2024-06-22 07:55:00 (54493): Reporting VM Process ID to BOINC.
2024-06-22 07:55:00 (54493): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-22 07:55:00 (54493): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 07:55:00 (54493): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 07:55:00 (54493): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 07:55:00 (54493): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 07:55:00 (54493): Detected: Web Application Enabled (http://localhost:56949)
2024-06-22 07:55:00 (54493): Preference change detected
2024-06-22 07:55:00 (54493): Setting CPU throttle for VM. (50%)
2024-06-22 07:55:00 (54493): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 07:55:02 (54493): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 07:55:02 (54493): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 07:55:05 (54493): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 07:55:05 (54493): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 07:55:05 (54493): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 07:55:13 (54493): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 07:55:13 (54493): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 07:55:19 (54493): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000165 main     Log opened 2024-06-22T05:55:17.915204000Z
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000239 main     OS Product: Linux
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000260 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000276 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000276 main     Process ID: 1360
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000276 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 07:55:19 (54493): Guest Log: 00:00:00.000778 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 07:55:19 (54493): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 07:55:19 (54493): Guest Log: [INFO] Mounting shared directory
2024-06-22 07:55:19 (54493): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 07:55:30 (54493): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 07:55:30 (54493): Guest Log: [INFO] Detected branch: prod
2024-06-22 07:55:30 (54493): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 07:55:30 (54493): Guest Log: Copying input files
2024-06-22 07:55:33 (54493): Guest Log: Copied input files into RunAtlas.
2024-06-22 07:55:33 (54493): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 07:55:33 (54493): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 07:55:33 (54493): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 07:55:33 (54493): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 07:55:39 (54493): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 07:55:40 (54493): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 07:55:40 (54493): Guest Log: 2.6.3.0 1636 0 30232 134155 4 1 3117206 4096000 0 65024 0 0 n/a 1 4 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-22 07:55:40 (54493): Guest Log: copied the webapp to /var/www
2024-06-22 07:55:40 (54493): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-22 07:55:40 (54493): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-22 07:55:40 (54493): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 07:55:40 (54493): Guest Log:  *** Starting ATLAS job. (PandaID=6239725927 taskID=38921007) ***
2024-06-22 09:34:01 (54493): Status Report: Elapsed Time: '6000.000000'
2024-06-22 09:34:01 (54493): Status Report: CPU Time: '18174.240000'
2024-06-22 11:13:01 (54493): Status Report: Elapsed Time: '12000.000000'
2024-06-22 11:13:01 (54493): Status Report: CPU Time: '40958.010000'
2024-06-22 12:52:02 (54493): Status Report: Elapsed Time: '18000.000000'
2024-06-22 12:52:02 (54493): Status Report: CPU Time: '63740.780000'
2024-06-22 13:57:22 (54493): Guest Log:  *** Job finished ***
2024-06-22 13:57:22 (54493): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:14,242 | INFO     | [data] copytool_out thread has finished
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:15,249 | INFO     | [job] queue monitor thread has finished
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:15,834 | INFO     | [data] queue_monitor thread has finished
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:16,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809006225216)>', '<ExcThread(monitor, started 139808273843968)>']
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:16,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:16,293 | INFO     | [monitor] control thread has ended
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,023 | INFO     | all workflow threads have been joined
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,023 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,023 | INFO     | traces error code: 0
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,153 [wrapper] ==== pilot stdout END ====
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,157 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,160 [wrapper] pilotpid: 6548
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,164 [wrapper] Pilot exit status: 0
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,265 [wrapper] pandaids: 6239725927
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,286 [wrapper] cleanup supervisor_pilot 23524 6549
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,290 [wrapper] Test setup, not cleaning
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,294 [wrapper] ==== wrapper stdout END ====
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,297 [wrapper] ==== wrapper stderr END ====
2024-06-22 13:57:22 (54493): Guest Log: 2024-06-22 11:57:21,305 [wrapper] apfmon messages muted
2024-06-22 13:57:22 (54493): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 13:57:22 (54493): Guest Log:     "exeErrorCode": 0,
2024-06-22 13:57:22 (54493): Guest Log:     "exeErrorDiag": "",
2024-06-22 13:57:22 (54493): Guest Log:     "pilotErrorCode": 0,
2024-06-22 13:57:22 (54493): Guest Log:     "pilotErrorDiag": "",
2024-06-22 13:57:22 (54493): Guest Log:  *** Listing of results directory ***
2024-06-22 13:57:22 (54493): Guest Log: total 352472
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 12:42 pilot3.tar.gz
2024-06-22 13:57:22 (54493): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 13:00 runpilot2-wrapper.sh
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 13:00 queuedata.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 22 05:55 start_atlas.sh
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas      6829 Jun 22 05:55 init_data.xml
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas    482527 Jun 22 05:55 input.tar.gz
2024-06-22 13:57:22 (54493): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 05:55 EVNT.38776201._000721.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas      2626 Jun 22 05:55 pandaJob.out
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 05:55 setup.sh.local
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas   1025961 Jun 22 05:55 agis_schedconf.cvmfs.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 05:55 cric_ddmendpoints.json
2024-06-22 13:57:22 (54493): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 05:55 pilot3
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas 354106897 Jun 22 11:55 HITS.38921007._052767.pool.root.1
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas      1036 Jun 22 11:56 memory_monitor_summary.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 11:56 pilot_heartbeat.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 11:56 agis_ddmendpoints.agis.ALL.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas    392887 Jun 22 11:56 log.38921007._052767.job.log.tgz.1
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas      7750 Jun 22 11:57 heartbeat.json
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 22 11:57 pilotlog.txt
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas   1289889 Jun 22 11:57 log.38921007._052767.job.log.1
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 11:57 output.list
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 11:57 runtime_log
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas   1699840 Jun 22 11:57 result.tar.gz
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 atlas atlas     11015 Jun 22 11:57 runtime_log.err
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas       675 Jun 22 11:57 L26MDmt3se5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmk6XKDmlY0iDo.diag
2024-06-22 13:57:22 (54493): Guest Log: Looking for outputfile HITS.38921007._052767.pool.root.1
2024-06-22 13:57:22 (54493): Guest Log: HITS file was successfully produced
2024-06-22 13:57:22 (54493): Guest Log: -rw-------. 1 atlas atlas 354106897 Jun 22 11:55 /home/atlas/RunAtlas/HITS.38921007._052767.pool.root.1
2024-06-22 13:57:22 (54493): Guest Log: Successfully finished the ATLAS job!
2024-06-22 13:57:22 (54493): Guest Log: Copying the results back to the shared directory!
2024-06-22 13:57:22 (54493): Guest Log:  *** Contents of shared directory: ***
2024-06-22 13:57:22 (54493): Guest Log: total 573556
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 root root 585101842 Jun 22 05:54 ATLAS.root_0
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 root root      6829 Jun 22 05:54 init_data.xml
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 root root    482527 Jun 22 05:54 input.tar.gz
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 root root   1699840 Jun 22  2024 result.tar.gz
2024-06-22 13:57:22 (54493): Guest Log: -rw-r--r--. 1 root root     17537 Jun 22 05:54 start_atlas.sh
2024-06-22 13:57:22 (54493): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 13:57:22 (54493): VM Completion File Detected.
2024-06-22 13:57:22 (54493): Powering off VM.
2024-06-22 13:57:22 (54493): Successfully stopped VM.
2024-06-22 13:57:22 (54493): Deregistering VM. (boinc_34f9e5c4005a3056, slot#0)
2024-06-22 13:57:22 (54493): Removing network bandwidth throttle group from VM.
2024-06-22 13:57:22 (54493): Removing VM from VirtualBox.
13:57:27 (54493): called boinc_finish(0)

</stderr_txt>
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