Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 11:48:38 (20108): Detected: vboxwrapper 26206
2024-06-27 11:48:38 (20108): Detected: BOINC client v7.22.2
2024-06-27 11:48:40 (20108): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-06-27 11:48:40 (20108): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 11:48:40 (20108): Create VM. (boinc_0ee730ef87709363, slot#0)
2024-06-27 11:48:41 (20108): Setting Memory Size for VM. (4800MB)
2024-06-27 11:48:41 (20108): Setting CPU Count for VM. (8)
2024-06-27 11:48:42 (20108): Setting Chipset Options for VM.
2024-06-27 11:48:42 (20108): Setting Graphics Controller Options for VM.
2024-06-27 11:48:42 (20108): Setting Boot Options for VM.
2024-06-27 11:48:42 (20108): Setting Network Configuration for NAT.
2024-06-27 11:48:43 (20108): Enabling VM Network Access.
2024-06-27 11:48:43 (20108): Disabling USB Support for VM.
2024-06-27 11:48:43 (20108): Disabling COM Port Support for VM.
2024-06-27 11:48:44 (20108): Disabling LPT Port Support for VM.
2024-06-27 11:48:44 (20108): Disabling Audio Support for VM.
2024-06-27 11:48:44 (20108): Disabling Clipboard Support for VM.
2024-06-27 11:48:44 (20108): Disabling Drag and Drop Support for VM.
2024-06-27 11:48:45 (20108): Adding storage controller(s) to VM.
2024-06-27 11:48:45 (20108): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 11:48:48 (20108): Adding VirtualBox Guest Additions to VM.
2024-06-27 11:48:48 (20108): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 11:48:48 (20108): forwarding host port 64844 to guest port 80
2024-06-27 11:48:49 (20108): Enabling remote desktop for VM.
2024-06-27 11:48:49 (20108): Required extension pack not installed, remote desktop not enabled.
2024-06-27 11:48:49 (20108): Enabling shared directory for VM.
2024-06-27 11:48:49 (20108): Starting VM using VBoxManage interface. (boinc_0ee730ef87709363, slot#0)
2024-06-27 11:48:54 (20108): Successfully started VM. (PID = '1276')
2024-06-27 11:48:54 (20108): Reporting VM Process ID to BOINC.
2024-06-27 11:48:54 (20108): Guest Log: BIOS: VirtualBox 7.0.8
2024-06-27 11:48:54 (20108): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 11:48:54 (20108): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 11:48:54 (20108): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 11:48:54 (20108): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 11:48:54 (20108): Detected: Web Application Enabled (http://localhost:64844)
2024-06-27 11:48:54 (20108): Preference change detected
2024-06-27 11:48:54 (20108): Setting CPU throttle for VM. (85%)
2024-06-27 11:48:55 (20108): Setting network throttle for VM. (1000KB)
2024-06-27 11:48:55 (20108): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 11:48:56 (20108): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 11:48:56 (20108): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 11:48:59 (20108): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 11:48:59 (20108): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 11:48:59 (20108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 11:49:07 (20108): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 11:49:07 (20108): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 11:49:14 (20108): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000070 main     Log opened 2024-06-27T11:49:12.431486000Z
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000140 main     OS Product: Linux
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000162 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000178 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000195 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000195 main     Process ID: 1365
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000195 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 11:49:14 (20108): Guest Log: 00:00:00.000584 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 11:49:15 (20108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 11:49:15 (20108): Guest Log: [INFO] Mounting shared directory
2024-06-27 11:49:15 (20108): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 11:49:24 (20108): Guest Log: 00:00:10.009800 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 739 608 000ns (GuestNow=1 719 478 164 693 762 000 ns GuestLast=1 719 488 952 433 370 000 ns fSetTimeLastLoop=true )
2024-06-27 11:50:19 (20108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 11:50:19 (20108): Guest Log: [INFO] Detected branch: prod
2024-06-27 11:50:20 (20108): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 11:50:20 (20108): Guest Log: Copying input files
2024-06-27 11:50:23 (20108): Guest Log: Copied input files into RunAtlas.
2024-06-27 11:50:23 (20108): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-27 11:50:23 (20108): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-27 11:50:23 (20108): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-27 11:50:23 (20108): Guest Log: Further information can be found at the LHC@home message board.
2024-06-27 11:51:29 (20108): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 11:51:29 (20108): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 11:51:29 (20108): Guest Log: 2.6.3.0 1662 2 32204 134351 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1sampa-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-27 11:51:31 (20108): Guest Log: copied the webapp to /var/www
2024-06-27 11:51:31 (20108): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-27 11:51:31 (20108): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-27 11:51:32 (20108): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 11:51:32 (20108): Guest Log:  *** Starting ATLAS job. (PandaID=6239668475 taskID=38921013) ***
2024-06-27 13:28:57 (20108): Status Report: Elapsed Time: '6000.000000'
2024-06-27 13:28:57 (20108): Status Report: CPU Time: '28282.281250'
2024-06-27 15:08:59 (20108): Status Report: Elapsed Time: '12000.000000'
2024-06-27 15:08:59 (20108): Status Report: CPU Time: '71400.000000'
2024-06-27 16:49:01 (20108): Status Report: Elapsed Time: '18000.000000'
2024-06-27 16:49:01 (20108): Status Report: CPU Time: '114541.421875'
2024-06-27 17:36:29 (20108): Guest Log:  *** Job finished ***
2024-06-27 17:36:29 (20108): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:14,188 | INFO     | [data] queue_monitor thread has finished
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:20,697 | INFO     | job.realtimelogging is not enabled
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:21,700 | INFO     | [payload] run_realtimelog thread has finished
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:23,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136053122880)>', '<ExcThread(monitor, started 140135739922176)>']
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:23,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:23,158 | INFO     | [monitor] control thread has ended
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,037 | INFO     | all workflow threads have been joined
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,037 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,037 | INFO     | traces error code: 0
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,138 [wrapper] ==== pilot stdout END ====
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,140 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,142 [wrapper] pilotpid: 6648
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:28,145 [wrapper] Pilot exit status: 0
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,065 [wrapper] pandaids: 6239668475
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,081 [wrapper] cleanup supervisor_pilot 24075 6649
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,083 [wrapper] Test setup, not cleaning
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,086 [wrapper] ==== wrapper stdout END ====
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,088 [wrapper] ==== wrapper stderr END ====
2024-06-27 17:36:29 (20108): Guest Log: 2024-06-27 14:36:29,092 [wrapper] apfmon messages muted
2024-06-27 17:36:29 (20108): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 17:36:29 (20108): Guest Log:     "exeErrorCode": 0,
2024-06-27 17:36:29 (20108): Guest Log:     "exeErrorDiag": "",
2024-06-27 17:36:29 (20108): Guest Log:     "pilotErrorCode": 0,
2024-06-27 17:36:29 (20108): Guest Log:     "pilotErrorDiag": "",
2024-06-27 17:36:29 (20108): Guest Log:  *** Listing of results directory ***
2024-06-27 17:36:29 (20108): Guest Log: total 345952
2024-06-27 17:36:29 (20108): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 11:59 pilot3.tar.gz
2024-06-27 17:36:29 (20108): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 12:18 queuedata.json
2024-06-27 17:36:29 (20108): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 12:19 runpilot2-wrapper.sh
2024-06-27 17:36:29 (20108): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 08:50 start_atlas.sh
2024-06-27 17:36:29 (20108): Guest Log: -rwxr-xr-x. 1 atlas atlas    482538 Jun 27 08:50 input.tar.gz
2024-06-27 17:36:29 (20108): Guest Log: -rwxr-xr-x. 1 atlas atlas      9263 Jun 27 08:50 init_data.xml
2024-06-27 17:36:29 (20108): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 08:50 EVNT.38776210._000719.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 17:36:29 (20108): Guest Log: -rw-r--r--. 1 atlas atlas      2645 Jun 27 08:51 pandaJob.out
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas       424 Jun 27 08:51 setup.sh.local
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas   1034827 Jun 27 08:57 agis_schedconf.cvmfs.json
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 08:57 cric_ddmendpoints.json
2024-06-27 17:36:29 (20108): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 08:58 pilot3
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 14:35 pilot_heartbeat.json
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas 346061867 Jun 27 14:35 HITS.38921013._051767.pool.root.1
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas      1029 Jun 27 14:35 memory_monitor_summary.json
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 14:36 agis_ddmendpoints.agis.ALL.json
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas    451514 Jun 27 14:36 log.38921013._051767.job.log.tgz.1
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas      7715 Jun 27 14:36 heartbeat.json
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas      4529 Jun 27 14:36 pilotlog.txt
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas   1904803 Jun 27 14:36 log.38921013._051767.job.log.1
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 14:36 output.list
2024-06-27 17:36:29 (20108): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 14:36 runtime_log
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas   2375680 Jun 27 14:36 result.tar.gz
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas       640 Jun 27 14:36 S6BMDmkPse5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmZ4XKDmtKVq6m.diag
2024-06-27 17:36:29 (20108): Guest Log: -rw-r--r--. 1 atlas atlas     10901 Jun 27 14:36 runtime_log.err
2024-06-27 17:36:29 (20108): Guest Log: Looking for outputfile HITS.38921013._051767.pool.root.1
2024-06-27 17:36:29 (20108): Guest Log: HITS file was successfully produced
2024-06-27 17:36:29 (20108): Guest Log: -rw-------. 1 atlas atlas 346061867 Jun 27 14:35 /home/atlas/RunAtlas/HITS.38921013._051767.pool.root.1
2024-06-27 17:36:30 (20108): Guest Log: Successfully finished the ATLAS job!
2024-06-27 17:36:30 (20108): Guest Log: Copying the results back to the shared directory!
2024-06-27 17:36:30 (20108): Guest Log:  *** Contents of shared directory: ***
2024-06-27 17:36:30 (20108): Guest Log: total 869440
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root 541350214 Jun 27 08:48 ATLAS.root_0
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root 346061867 Jun 27  2024 HITS.pool.root.1
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root      9263 Jun 27 08:48 init_data.xml
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root    482538 Jun 21 17:49 input.tar.gz
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root   2375680 Jun 27  2024 result.tar.gz
2024-06-27 17:36:30 (20108): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 21 17:49 start_atlas.sh
2024-06-27 17:36:30 (20108): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 17:36:30 (20108): VM Completion File Detected.
2024-06-27 17:36:30 (20108): Powering off VM.
2024-06-27 17:36:31 (20108): Successfully stopped VM.
2024-06-27 17:36:31 (20108): Deregistering VM. (boinc_0ee730ef87709363, slot#0)
2024-06-27 17:36:31 (20108): Removing network bandwidth throttle group from VM.
2024-06-27 17:36:31 (20108): Removing VM from VirtualBox.
17:36:36 (20108): called boinc_finish(0)

</stderr_txt>
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