Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 12:44:43 (64352): Detected: vboxwrapper 26206
2024-06-22 12:44:43 (64352): Detected: BOINC client v7.24.1
2024-06-22 12:44:43 (64352): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-22 12:44:43 (64352): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 12:44:44 (64352): Create VM. (boinc_d769ed2223770fc0, slot#0)
2024-06-22 12:44:44 (64352): Setting Memory Size for VM. (4600MB)
2024-06-22 12:44:44 (64352): Setting CPU Count for VM. (6)
2024-06-22 12:44:44 (64352): Setting Chipset Options for VM.
2024-06-22 12:44:44 (64352): Setting Graphics Controller Options for VM.
2024-06-22 12:44:44 (64352): Setting Boot Options for VM.
2024-06-22 12:44:44 (64352): Setting Network Configuration for NAT.
2024-06-22 12:44:44 (64352): Enabling VM Network Access.
2024-06-22 12:44:44 (64352): Disabling USB Support for VM.
2024-06-22 12:44:44 (64352): Disabling COM Port Support for VM.
2024-06-22 12:44:44 (64352): Disabling LPT Port Support for VM.
2024-06-22 12:44:44 (64352): Disabling Audio Support for VM.
2024-06-22 12:44:44 (64352): Disabling Clipboard Support for VM.
2024-06-22 12:44:44 (64352): Disabling Drag and Drop Support for VM.
2024-06-22 12:44:44 (64352): Adding storage controller(s) to VM.
2024-06-22 12:44:44 (64352): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 12:44:45 (64352): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 12:44:45 (64352): forwarding host port 40427 to guest port 80
2024-06-22 12:44:45 (64352): Enabling remote desktop for VM.
2024-06-22 12:44:45 (64352): Required extension pack not installed, remote desktop not enabled.
2024-06-22 12:44:45 (64352): Enabling shared directory for VM.
2024-06-22 12:44:45 (64352): Starting VM using VBoxManage interface. (boinc_d769ed2223770fc0, slot#0)
2024-06-22 12:44:47 (64352): Successfully started VM. (PID = '64608')
2024-06-22 12:44:47 (64352): Reporting VM Process ID to BOINC.
2024-06-22 12:44:47 (64352): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-22 12:44:47 (64352): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 12:44:47 (64352): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 12:44:47 (64352): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 12:44:47 (64352): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 12:44:47 (64352): Detected: Web Application Enabled (http://localhost:40427)
2024-06-22 12:44:47 (64352): Preference change detected
2024-06-22 12:44:47 (64352): Setting CPU throttle for VM. (50%)
2024-06-22 12:44:47 (64352): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 12:44:49 (64352): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 12:44:49 (64352): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 12:44:52 (64352): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 12:44:52 (64352): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 12:44:52 (64352): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 12:44:59 (64352): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 12:44:59 (64352): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 12:45:05 (64352): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000077 main     Log opened 2024-06-22T10:45:03.959972000Z
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000139 main     OS Product: Linux
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000157 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000175 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000184 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000184 main     Process ID: 1344
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000185 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 12:45:05 (64352): Guest Log: 00:00:00.000635 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 12:45:05 (64352): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 12:45:05 (64352): Guest Log: [INFO] Mounting shared directory
2024-06-22 12:45:05 (64352): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 12:45:23 (64352): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 12:45:23 (64352): Guest Log: [INFO] Detected branch: prod
2024-06-22 12:45:23 (64352): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 12:45:23 (64352): Guest Log: Copying input files
2024-06-22 12:45:26 (64352): Guest Log: Copied input files into RunAtlas.
2024-06-22 12:45:26 (64352): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 12:45:26 (64352): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 12:45:26 (64352): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 12:45:26 (64352): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 12:45:33 (64352): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 12:45:33 (64352): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 12:45:33 (64352): Guest Log: 2.6.3.0 1623 0 30236 134163 4 1 3117206 4096000 0 65024 0 0 n/a 1 3 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-22 12:45:33 (64352): Guest Log: copied the webapp to /var/www
2024-06-22 12:45:33 (64352): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-22 12:45:33 (64352): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-22 12:45:33 (64352): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 12:45:33 (64352): Guest Log:  *** Starting ATLAS job. (PandaID=6239656132 taskID=38920995) ***
2024-06-22 14:23:47 (64352): Status Report: Elapsed Time: '6000.000000'
2024-06-22 14:23:47 (64352): Status Report: CPU Time: '14397.150000'
2024-06-22 16:02:47 (64352): Status Report: Elapsed Time: '12000.000000'
2024-06-22 16:02:47 (64352): Status Report: CPU Time: '31462.040000'
2024-06-22 17:41:48 (64352): Status Report: Elapsed Time: '18000.000000'
2024-06-22 17:41:48 (64352): Status Report: CPU Time: '48512.710000'
2024-06-22 18:13:48 (64352): Guest Log:  *** Job finished ***
2024-06-22 18:13:48 (64352): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 18:13:48 (64352): Guest Log: 2024-06-22 16:13:35,184 | INFO     | [data] queue_monitor thread has finished
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:41,838 | INFO     | job.realtimelogging is not enabled
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:42,840 | INFO     | [payload] run_realtimelog thread has finished
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:43,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739541182272)>', '<ExcThread(monitor, started 139738807777024)>']
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:44,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:44,309 | INFO     | [monitor] control thread has ended
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,409 | INFO     | all workflow threads have been joined
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,409 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,409 | INFO     | traces error code: 0
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,454 [wrapper] ==== pilot stdout END ====
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,456 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,459 [wrapper] pilotpid: 6521
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,461 [wrapper] Pilot exit status: 0
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,556 [wrapper] pandaids: 6239656132
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,572 [wrapper] cleanup supervisor_pilot 19945 6522
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,575 [wrapper] Test setup, not cleaning
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,577 [wrapper] ==== wrapper stdout END ====
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,580 [wrapper] ==== wrapper stderr END ====
2024-06-22 18:13:49 (64352): Guest Log: 2024-06-22 16:13:48,585 [wrapper] apfmon messages muted
2024-06-22 18:13:49 (64352): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 18:13:49 (64352): Guest Log:     "exeErrorCode": 0,
2024-06-22 18:13:49 (64352): Guest Log:     "exeErrorDiag": "",
2024-06-22 18:13:49 (64352): Guest Log:     "pilotErrorCode": 0,
2024-06-22 18:13:49 (64352): Guest Log:     "pilotErrorDiag": "",
2024-06-22 18:13:49 (64352): Guest Log:  *** Listing of results directory ***
2024-06-22 18:13:49 (64352): Guest Log: total 348776
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 11:59 pilot3.tar.gz
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 12:09 queuedata.json
2024-06-22 18:13:49 (64352): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 12:11 runpilot2-wrapper.sh
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 22 10:45 start_atlas.sh
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas    482535 Jun 22 10:45 input.tar.gz
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas      6887 Jun 22 10:45 init_data.xml
2024-06-22 18:13:49 (64352): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 10:45 EVNT.38776180._000907.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas      2613 Jun 22 10:45 pandaJob.out
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 10:45 setup.sh.local
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas   1025938 Jun 22 10:46 agis_schedconf.cvmfs.json
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 10:46 cric_ddmendpoints.json
2024-06-22 18:13:49 (64352): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 10:46 pilot3
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas 350778881 Jun 22 16:12 HITS.38920995._057457.pool.root.1
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas      1044 Jun 22 16:13 memory_monitor_summary.json
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 16:13 agis_ddmendpoints.agis.ALL.json
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas    356260 Jun 22 16:13 log.38920995._057457.job.log.tgz.1
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas      7735 Jun 22 16:13 heartbeat.json
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 16:13 pilot_heartbeat.json
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 22 16:13 pilotlog.txt
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas   1095125 Jun 22 16:13 log.38920995._057457.job.log.1
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 16:13 output.list
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 16:13 runtime_log
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas   1474560 Jun 22 16:13 result.tar.gz
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas       675 Jun 22 16:13 Y8oNDmjHse5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmthmKDmThfP5m.diag
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 atlas atlas     11015 Jun 22 16:13 runtime_log.err
2024-06-22 18:13:49 (64352): Guest Log: Looking for outputfile HITS.38920995._057457.pool.root.1
2024-06-22 18:13:49 (64352): Guest Log: HITS file was successfully produced
2024-06-22 18:13:49 (64352): Guest Log: -rw-------. 1 atlas atlas 350778881 Jun 22 16:12 /home/atlas/RunAtlas/HITS.38920995._057457.pool.root.1
2024-06-22 18:13:49 (64352): Guest Log: Successfully finished the ATLAS job!
2024-06-22 18:13:49 (64352): Guest Log: Copying the results back to the shared directory!
2024-06-22 18:13:49 (64352): Guest Log:  *** Contents of shared directory: ***
2024-06-22 18:13:49 (64352): Guest Log: total 621988
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 root root 634921149 Jun 22 10:44 ATLAS.root_0
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 root root      6887 Jun 22 10:44 init_data.xml
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 root root    482535 Jun 22 10:44 input.tar.gz
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 root root   1474560 Jun 22  2024 result.tar.gz
2024-06-22 18:13:49 (64352): Guest Log: -rw-r--r--. 1 root root     17537 Jun 22 10:44 start_atlas.sh
2024-06-22 18:13:49 (64352): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 18:13:49 (64352): VM Completion File Detected.
2024-06-22 18:13:49 (64352): Powering off VM.
2024-06-22 18:13:50 (64352): Successfully stopped VM.
2024-06-22 18:13:50 (64352): Deregistering VM. (boinc_d769ed2223770fc0, slot#0)
2024-06-22 18:13:50 (64352): Removing network bandwidth throttle group from VM.
2024-06-22 18:13:50 (64352): Removing VM from VirtualBox.
18:13:55 (64352): called boinc_finish(0)

</stderr_txt>
]]>

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