Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-21 17:43:40 (715821): Detected: vboxwrapper 26206
2024-06-21 17:43:40 (715821): Detected: BOINC client v8.0.3
2024-06-21 17:43:41 (715821): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-21 17:43:41 (715821): Successfully copied 'init_data.xml' to the shared directory.
2024-06-21 17:43:41 (715821): Create VM. (boinc_2fed9e897736a6d5, slot#6)
2024-06-21 17:43:41 (715821): Setting Memory Size for VM. (4096MB)
2024-06-21 17:43:41 (715821): Setting CPU Count for VM. (1)
2024-06-21 17:43:41 (715821): Setting Chipset Options for VM.
2024-06-21 17:43:41 (715821): Setting Graphics Controller Options for VM.
2024-06-21 17:43:41 (715821): Setting Boot Options for VM.
2024-06-21 17:43:42 (715821): Setting Network Configuration for NAT.
2024-06-21 17:43:42 (715821): Enabling VM Network Access.
2024-06-21 17:43:42 (715821): Disabling USB Support for VM.
2024-06-21 17:43:42 (715821): Disabling COM Port Support for VM.
2024-06-21 17:43:42 (715821): Disabling LPT Port Support for VM.
2024-06-21 17:43:42 (715821): Disabling Audio Support for VM.
2024-06-21 17:43:42 (715821): Disabling Clipboard Support for VM.
2024-06-21 17:43:42 (715821): Disabling Drag and Drop Support for VM.
2024-06-21 17:43:42 (715821): Adding storage controller(s) to VM.
2024-06-21 17:43:42 (715821): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-21 17:43:42 (715821): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-21 17:43:43 (715821): forwarding host port 51913 to guest port 80
2024-06-21 17:43:43 (715821): Enabling remote desktop for VM.
2024-06-21 17:43:43 (715821): Enabling shared directory for VM.
2024-06-21 17:43:43 (715821): Starting VM using VBoxManage interface. (boinc_2fed9e897736a6d5, slot#6)
2024-06-21 17:43:44 (715821): Successfully started VM. (PID = '716211')
2024-06-21 17:43:44 (715821): Reporting VM Process ID to BOINC.
2024-06-21 17:43:44 (715821): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-21 17:43:44 (715821): Guest Log: CPUID EDX: 0x178bfbff
2024-06-21 17:43:44 (715821): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-21 17:43:44 (715821): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-21 17:43:44 (715821): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-21 17:43:44 (715821): Detected: Web Application Enabled (http://localhost:51913)
2024-06-21 17:43:44 (715821): Detected: Remote Desktop Enabled (localhost:42699)
2024-06-21 17:43:44 (715821): Preference change detected
2024-06-21 17:43:44 (715821): Setting CPU throttle for VM. (100%)
2024-06-21 17:43:44 (715821): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-21 17:43:46 (715821): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-21 17:43:46 (715821): Guest Log: BIOS: Booting from Hard Disk...
2024-06-21 17:43:49 (715821): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-21 17:43:49 (715821): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-21 17:43:49 (715821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-21 17:43:55 (715821): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-21 17:43:55 (715821): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-21 17:44:09 (715821): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000256 main     Log opened 2024-06-21T15:44:07.872895000Z
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000496 main     OS Product: Linux
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000588 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000683 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000750 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000751 main     Process ID: 1253
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.000752 main     Package type: LINUX_64BITS_GENERIC
2024-06-21 17:44:09 (715821): Guest Log: 00:00:00.003821 main     5.2.32 r132073 started. Verbose level = 0
2024-06-21 17:44:09 (715821): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-21 17:44:10 (715821): Guest Log: [INFO] Mounting shared directory
2024-06-21 17:44:10 (715821): Guest Log: [INFO] Checking for init_data.xml
2024-06-21 17:44:12 (715821): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-21 17:44:12 (715821): Guest Log: [INFO] Detected branch: prod
2024-06-21 17:44:12 (715821): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-21 17:44:12 (715821): Guest Log: Copying input files
2024-06-21 17:44:17 (715821): Guest Log: Copied input files into RunAtlas.
2024-06-21 17:44:18 (715821): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-21 17:44:45 (715821): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-21 17:44:45 (715821): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-21 17:44:45 (715821): Guest Log: 2.6.3.0 1522 0 29544 134133 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2024-06-21 17:44:46 (715821): Guest Log: copied the webapp to /var/www
2024-06-21 17:44:46 (715821): Guest Log: core_number=1
2024-06-21 17:44:46 (715821): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-21 17:44:47 (715821): Guest Log:  *** Starting ATLAS job. (PandaID=6239588227 taskID=38920987) ***
2024-06-21 19:22:45 (715821): Status Report: Elapsed Time: '6000.000000'
2024-06-21 19:22:45 (715821): Status Report: CPU Time: '5240.990000'
2024-06-21 21:01:45 (715821): Status Report: Elapsed Time: '12000.000000'
2024-06-21 21:01:45 (715821): Status Report: CPU Time: '11181.370000'
2024-06-21 22:40:46 (715821): Status Report: Elapsed Time: '18000.000000'
2024-06-21 22:40:46 (715821): Status Report: CPU Time: '17129.080000'
2024-06-22 00:19:47 (715821): Status Report: Elapsed Time: '24000.000000'
2024-06-22 00:19:47 (715821): Status Report: CPU Time: '23069.790000'
2024-06-22 01:58:47 (715821): Status Report: Elapsed Time: '30000.000000'
2024-06-22 01:58:47 (715821): Status Report: CPU Time: '29008.310000'
2024-06-22 03:37:48 (715821): Status Report: Elapsed Time: '36000.000000'
2024-06-22 03:37:48 (715821): Status Report: CPU Time: '34956.000000'
2024-06-22 05:16:49 (715821): Status Report: Elapsed Time: '42000.000000'
2024-06-22 05:16:49 (715821): Status Report: CPU Time: '40900.540000'
2024-06-22 06:55:49 (715821): Status Report: Elapsed Time: '48000.000000'
2024-06-22 06:55:49 (715821): Status Report: CPU Time: '46849.460000'
2024-06-22 08:34:50 (715821): Status Report: Elapsed Time: '54000.000000'
2024-06-22 08:34:50 (715821): Status Report: CPU Time: '52797.620000'
2024-06-22 10:13:50 (715821): Status Report: Elapsed Time: '60000.000000'
2024-06-22 10:13:50 (715821): Status Report: CPU Time: '58745.330000'
2024-06-22 11:52:51 (715821): Status Report: Elapsed Time: '66000.000000'
2024-06-22 11:52:51 (715821): Status Report: CPU Time: '64680.690000'
2024-06-22 13:31:52 (715821): Status Report: Elapsed Time: '72000.000000'
2024-06-22 13:31:52 (715821): Status Report: CPU Time: '70628.610000'
2024-06-22 15:10:52 (715821): Status Report: Elapsed Time: '78000.000000'
2024-06-22 15:10:52 (715821): Status Report: CPU Time: '76576.620000'
2024-06-22 15:52:15 (715821): Guest Log:  *** Job finished ***
2024-06-22 15:52:15 (715821): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:06,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:07,681 | INFO     | [job] queue monitor thread has finished
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:09,145 | INFO     | [data] queue_monitor thread has finished
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:09,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990419945280)>', '<ExcThread(monitor, started 139989761390336)>']
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:10,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:10,548 | INFO     | [monitor] control thread has ended
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,590 | INFO     | all workflow threads have been joined
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,590 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,590 | INFO     | traces error code: 0
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,699 [wrapper] ==== pilot stdout END ====
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,704 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,709 [wrapper] pilotpid: 6356
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,713 [wrapper] Pilot exit status: 0
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,775 [wrapper] pandaids: 6239588227
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,805 [wrapper] cleanup supervisor_pilot  1054 6357
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,811 [wrapper] Test setup, not cleaning
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,816 [wrapper] ==== wrapper stdout END ====
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,820 [wrapper] ==== wrapper stderr END ====
2024-06-22 15:52:15 (715821): Guest Log: 2024-06-22 13:52:14,832 [wrapper] apfmon messages muted
2024-06-22 15:52:15 (715821): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 15:52:15 (715821): Guest Log:     "exeErrorCode": 0,
2024-06-22 15:52:15 (715821): Guest Log:     "exeErrorDiag": "",
2024-06-22 15:52:15 (715821): Guest Log:     "pilotErrorCode": 0,
2024-06-22 15:52:15 (715821): Guest Log:     "pilotErrorDiag": "",
2024-06-22 15:52:15 (715821): Guest Log:  *** Listing of results directory ***
2024-06-22 15:52:15 (715821): Guest Log: total 356176
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 09:44 pilot3.tar.gz
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 09:51 queuedata.json
2024-06-22 15:52:15 (715821): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 09:52 runpilot2-wrapper.sh
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas      9682 Jun 21 15:44 init_data.xml
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas    482518 Jun 21 15:44 input.tar.gz
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 21 15:44 start_atlas.sh
2024-06-22 15:52:15 (715821): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 21 15:44 EVNT.38776170._000690.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas      2616 Jun 21 15:44 pandaJob.out
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas       456 Jun 21 15:44 setup.sh.local
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas   1023047 Jun 21 15:46 agis_schedconf.cvmfs.json
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas   1321307 Jun 21 15:46 cric_ddmendpoints.json
2024-06-22 15:52:15 (715821): Guest Log: drwx------. 4 atlas atlas      4096 Jun 21 15:46 pilot3
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas 335879302 Jun 22 13:50 HITS.38920987._059752.pool.root.1
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas      1019 Jun 22 13:51 memory_monitor_summary.json
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 13:51 agis_ddmendpoints.agis.ALL.json
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas   1094841 Jun 22 13:51 log.38920987._059752.job.log.tgz.1
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 13:51 pilot_heartbeat.json
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas      7722 Jun 22 13:52 heartbeat.json
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 22 13:52 pilotlog.txt
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas  11591785 Jun 22 13:52 log.38920987._059752.job.log.1
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 13:52 output.list
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 13:52 runtime_log
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas  12707840 Jun 22 13:52 result.tar.gz
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 atlas atlas     11143 Jun 22 13:52 runtime_log.err
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas       646 Jun 22 13:52 cAkKDmI7pe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmrCrKDm3gj5An.diag
2024-06-22 15:52:15 (715821): Guest Log: Looking for outputfile HITS.38920987._059752.pool.root.1
2024-06-22 15:52:15 (715821): Guest Log: HITS file was successfully produced
2024-06-22 15:52:15 (715821): Guest Log: -rw-------. 1 atlas atlas 335879302 Jun 22 13:50 /home/atlas/RunAtlas/HITS.38920987._059752.pool.root.1
2024-06-22 15:52:15 (715821): Guest Log: Successfully finished the ATLAS job!
2024-06-22 15:52:15 (715821): Guest Log: Copying the results back to the shared directory!
2024-06-22 15:52:15 (715821): Guest Log:  *** Contents of shared directory: ***
2024-06-22 15:52:15 (715821): Guest Log: total 634904
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 root root 636911250 Jun 21 15:43 ATLAS.root_0
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 root root      9682 Jun 21 15:43 init_data.xml
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 root root    482518 Jun 21 15:43 input.tar.gz
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 root root  12707840 Jun 22 13:52 result.tar.gz
2024-06-22 15:52:15 (715821): Guest Log: -rw-r--r--. 1 root root     17537 Jun 21 15:43 start_atlas.sh
2024-06-22 15:52:15 (715821): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 15:52:15 (715821): VM Completion File Detected.
2024-06-22 15:52:15 (715821): Powering off VM.
2024-06-22 15:52:16 (715821): Successfully stopped VM.
2024-06-22 15:52:16 (715821): Deregistering VM. (boinc_2fed9e897736a6d5, slot#6)
2024-06-22 15:52:16 (715821): Removing network bandwidth throttle group from VM.
2024-06-22 15:52:16 (715821): Removing VM from VirtualBox.
15:52:21 (715821): called boinc_finish(0)

</stderr_txt>
]]>

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