Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:04:34 (3047239): wrapper (7.7.26015): starting
21:04:34 (3047239): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 21:04:35] Arguments: --nthreads 4
[2024-06-21 21:04:35] Threads: 4
[2024-06-21 21:04:35] Checking for CVMFS
[2024-06-21 21:04:35] No cvmfs_config command found, will try listing directly
[2024-06-21 21:04:35] CVMFS is ok
[2024-06-21 21:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 21:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 21:04:35] Further information can be found at the LHC@home message board.
[2024-06-21 21:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 21:04:35] Checking for apptainer binary...
[2024-06-21 21:04:35] which: no apptainer in ((null))
[2024-06-21 21:04:35] apptainer is not installed, using version from CVMFS
[2024-06-21 21:04:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 21:04:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-06-21 21:04:36] apptainer works
[2024-06-21 21:04:36] Set ATHENA_PROC_NUMBER=4
[2024-06-21 21:04:36] Set ATHENA_CORE_NUMBER=4
[2024-06-21 21:04:36] Starting ATLAS job with PandaID=6239585396
[2024-06-21 21:04:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 11:49:16]  *** The last 200 lines of the pilot log: ***
[2024-06-22 11:49:16] 2024-06-22 09:48:59,308 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 11:49:16] 2024-06-22 09:48:59,324 | INFO     | fitting pss+swap vs Time
[2024-06-22 11:49:16] 2024-06-22 09:48:59,325 | INFO     | model: linear, x: [1718996775.0, 1718996836.0, 1718996897.0, 1718996958.0, 1718997019.0, 1718997080.0, 1718997141.0, 1718997202.0, 1718997263.0, 1718997324.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,326 | INFO     | sum of square deviations: 203487238570.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,346 | INFO     | sum of deviations: 540855827109.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,346 | INFO     | mean x: 1719023249.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,346 | INFO     | mean y: 2357946.8411967778
[2024-06-22 11:49:16] 2024-06-22 09:48:59,346 | INFO     | -- intersect: -4566693889.977857
[2024-06-22 11:49:16] 2024-06-22 09:48:59,347 | INFO     | intersect: -4566693889.977857
[2024-06-22 11:49:16] 2024-06-22 09:48:59,348 | INFO     | chi2: 4.131943180361467
[2024-06-22 11:49:16] 2024-06-22 09:48:59,349 | INFO     | model: linear, x: [1718996775.0, 1718996836.0, 1718996897.0, 1718996958.0, 1718997019.0, 1718997080.0, 1718997141.0, 1718997202.0, 1718997263.0, 1718997324.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,349 | INFO     | sum of square deviations: 199994968440.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,369 | INFO     | sum of deviations: 593144611760.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,370 | INFO     | mean x: 1719023096.5
[2024-06-22 11:49:16] 2024-06-22 09:48:59,370 | INFO     | mean y: 2360218.7291666665
[2024-06-22 11:49:16] 2024-06-22 09:48:59,370 | INFO     | -- intersect: -5095914478.54584
[2024-06-22 11:49:16] 2024-06-22 09:48:59,370 | INFO     | intersect: -5095914478.54584
[2024-06-22 11:49:16] 2024-06-22 09:48:59,371 | INFO     | chi2: 3.3290542174644875
[2024-06-22 11:49:16] 2024-06-22 09:48:59,372 | INFO     | current chi2=3.3290542174644875 (change=19.43126823991664 %)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,372 | INFO     | right removable region: 863
[2024-06-22 11:49:16] 2024-06-22 09:48:59,373 | INFO     | model: linear, x: [1718997080.0, 1718997141.0, 1718997202.0, 1718997263.0, 1718997324.0, 1718997385.0, 1718997446.0, 1718997507.0, 1718997568.0, 1718997629.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,373 | INFO     | sum of square deviations: 199994968440.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,393 | INFO     | sum of deviations: 344959414051.5001
[2024-06-22 11:49:16] 2024-06-22 09:48:59,393 | INFO     | mean x: 1719023401.5
[2024-06-22 11:49:16] 2024-06-22 09:48:59,393 | INFO     | mean y: 2366493.4594907407
[2024-06-22 11:49:16] 2024-06-22 09:48:59,394 | INFO     | -- intersect: -2962674627.0632944
[2024-06-22 11:49:16] 2024-06-22 09:48:59,394 | INFO     | intersect: -2962674627.0632944
[2024-06-22 11:49:16] 2024-06-22 09:48:59,395 | INFO     | chi2: 1.9721507214986755
[2024-06-22 11:49:16] 2024-06-22 09:48:59,395 | INFO     | current chi2=1.9721507214986755 (change=52.270623398888326 %)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,396 | INFO     | model: linear, x: [1718997385.0, 1718997446.0, 1718997507.0, 1718997568.0, 1718997629.0, 1718997690.0, 1718997751.0, 1718997812.0, 1718997873.0, 1718997934.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,397 | INFO     | sum of square deviations: 196542885110.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,416 | INFO     | sum of deviations: 201984563045.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,416 | INFO     | mean x: 1719023554.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,417 | INFO     | mean y: 2372809.396973225
[2024-06-22 11:49:16] 2024-06-22 09:48:59,417 | INFO     | -- intersect: -1764245306.6667295
[2024-06-22 11:49:16] 2024-06-22 09:48:59,417 | INFO     | intersect: -1764245306.6667295
[2024-06-22 11:49:16] 2024-06-22 09:48:59,418 | INFO     | chi2: 0.9518710619772182
[2024-06-22 11:49:16] 2024-06-22 09:48:59,418 | INFO     | current chi2=0.9518710619772182 (change=51.7343653504397 %)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,419 | INFO     | model: linear, x: [1718997690.0, 1718997751.0, 1718997812.0, 1718997873.0, 1718997934.0, 1718997995.0, 1718998056.0, 1718998117.0, 1718998178.0, 1718998239.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,419 | INFO     | sum of square deviations: 193130756017.5
[2024-06-22 11:49:16] 2024-06-22 09:48:59,429 | INFO     | sum of deviations: 159272760460.00037
[2024-06-22 11:49:16] 2024-06-22 09:48:59,429 | INFO     | mean x: 1719023706.5
[2024-06-22 11:49:16] 2024-06-22 09:48:59,429 | INFO     | mean y: 2374714.93676815
[2024-06-22 11:49:16] 2024-06-22 09:48:59,429 | INFO     | -- intersect: -1415284785.1670241
[2024-06-22 11:49:16] 2024-06-22 09:48:59,429 | INFO     | intersect: -1415284785.1670241
[2024-06-22 11:49:16] 2024-06-22 09:48:59,430 | INFO     | chi2: 0.8355754562094891
[2024-06-22 11:49:16] 2024-06-22 09:48:59,430 | INFO     | current chi2=0.8355754562094891 (change=12.217579713597008 %)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,430 | INFO     | left removable region: 30
[2024-06-22 11:49:16] 2024-06-22 09:48:59,430 | INFO     | model: linear, x: [1718998605.0, 1718998666.0, 1718998727.0, 1718998788.0, 1718998849.0, 1718998910.0, 1718998971.0, 1718999032.0, 1718999093.0, 1718999154.0, 1718
[2024-06-22 11:49:16] 2024-06-22 09:48:59,431 | INFO     | sum of square deviations: 179230865632.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,440 | INFO     | sum of deviations: 178479743900.99997
[2024-06-22 11:49:16] 2024-06-22 09:48:59,440 | INFO     | mean x: 1719023981.0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,440 | INFO     | mean y: 2378670.2268907563
[2024-06-22 11:49:16] 2024-06-22 09:48:59,440 | INFO     | -- intersect: -1709441215.2972195
[2024-06-22 11:49:16] 2024-06-22 09:48:59,440 | INFO     | intersect: -1709441215.2972195
[2024-06-22 11:49:16] 2024-06-22 09:48:59,441 | INFO     | chi2: 0.009020733681151655
[2024-06-22 11:49:16] 2024-06-22 09:48:59,441 | INFO     | -- intersect: -1709441215.2972195
[2024-06-22 11:49:16] 2024-06-22 09:48:59,441 | INFO     | current memory leak: 1.00 B/s (using 833 data points, chi2=0.01)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,442 | INFO     | ..............................
[2024-06-22 11:49:16] 2024-06-22 09:48:59,449 | WARNING  | process 3059914 is no longer using CPU - aborting
[2024-06-22 11:49:16] 2024-06-22 09:48:59,449 | INFO     | . Timing measurements:
[2024-06-22 11:49:16] 2024-06-22 09:48:59,449 | INFO     | . get job = 0 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,449 | INFO     | . initial setup = 2 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,449 | INFO     | . payload setup = 23 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,450 | INFO     | . stage-in = 0 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,450 | INFO     | . payload execution = 52964 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,450 | INFO     | . stage-out = 1 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,450 | INFO     | . log creation = 0 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,450 | INFO     | ..............................
[2024-06-22 11:49:16] 2024-06-22 09:48:59,875 | INFO     | 
[2024-06-22 11:49:16] 2024-06-22 09:48:59,875 | INFO     | job summary report
[2024-06-22 11:49:16] 2024-06-22 09:48:59,875 | INFO     | --------------------------------------------------
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | PanDA job id: 6239585396
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | task id: 38921013
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | errors: (none)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | pilot state: finished 
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | transexitcode: 0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | exeerrorcode: 0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,876 | INFO     | exeerrordiag: 
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | exitcode: 0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | exitmsg: OK
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | cpuconsumptiontime: 204436 s
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | nevents: 400
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | neventsw: 0
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | pid: 3059914
[2024-06-22 11:49:16] 2024-06-22 09:48:59,877 | INFO     | pgrp: 3059914
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | corecount: 4
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | event service: False
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | sizes: {0: 2386922, 1: 2387121, 12: 2387121, 13: 2387355, 22: 2387411, 52992: 2435467, 52994: 2444449, 52997: 2444505, 53001: 2444675}
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | --------------------------------------------------
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | 
[2024-06-22 11:49:16] 2024-06-22 09:48:59,878 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/1
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | job 6239585396 has completed (purged errors)
[2024-06-22 11:49:16] 2024-06-22 09:48:59,897 | INFO     | overall cleanup function is called
[2024-06-22 11:49:16] 2024-06-22 09:49:00,904 | INFO     | --- collectZombieJob: --- 10, [3059914]
[2024-06-22 11:49:16] 2024-06-22 09:49:00,904 | INFO     | zombie collector waiting for pid 3059914
[2024-06-22 11:49:16] 2024-06-22 09:49:00,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 11:49:16] 2024-06-22 09:49:01,909 | INFO     | collected zombie processes
[2024-06-22 11:49:16] 2024-06-22 09:49:01,909 | INFO     | will now attempt to kill all subprocesses of pid=3059914
[2024-06-22 11:49:16] 2024-06-22 09:49:02,054 | INFO     | process IDs to be killed: [3059914] (in reverse order)
[2024-06-22 11:49:16] 2024-06-22 09:49:02,154 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 11:49:16] 2024-06-22 09:49:02,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 11:49:16] 2024-06-22 09:49:02,161 | INFO     | did not find any defunct processes belonging to 3059914
[2024-06-22 11:49:16] 2024-06-22 09:49:02,166 | INFO     | did not find any defunct processes belonging to 3059914
[2024-06-22 11:49:16] 2024-06-22 09:49:02,167 | INFO     | ready for new job
[2024-06-22 11:49:16] 2024-06-22 09:49:02,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 11:49:16] 2024-06-22 09:49:02,171 | INFO     | *************************************
[2024-06-22 11:49:16] 2024-06-22 09:49:02,171 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 11:49:16] 2024-06-22 09:49:02,171 | INFO     | *************************************
[2024-06-22 11:49:16] 2024-06-22 09:49:02,171 | INFO     | 
[2024-06-22 11:49:16] 2024-06-22 09:49:02,174 | INFO     | architecture information:
[2024-06-22 11:49:16] 2024-06-22 09:49:02,174 | INFO     | executing command: cat /etc/os-release
[2024-06-22 11:49:16] 2024-06-22 09:49:02,188 | INFO     | cat /etc/os-release:
[2024-06-22 11:49:16] NAME="CentOS Linux"
[2024-06-22 11:49:16] VERSION="7 (Core)"
[2024-06-22 11:49:16] ID="centos"
[2024-06-22 11:49:16] ID_LIKE="rhel fedora"
[2024-06-22 11:49:16] VERSION_ID="7"
[2024-06-22 11:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 11:49:16] ANSI_COLOR="0;31"
[2024-06-22 11:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 11:49:16] HOME_URL="https://www.centos.org/"
[2024-06-22 11:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 11:49:16] 
[2024-06-22 11:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 11:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 11:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 11:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 11:49:16] 
[2024-06-22 11:49:16] 2024-06-22 09:49:02,188 | INFO     | *************************************
[2024-06-22 11:49:16] 2024-06-22 09:49:02,690 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/1
[2024-06-22 11:49:16] 2024-06-22 09:49:02,712 | INFO     | sufficient remaining disk space (1665186922496 B)
[2024-06-22 11:49:16] 2024-06-22 09:49:02,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 11:49:16] 2024-06-22 09:49:02,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 11:49:16] 2024-06-22 09:49:02,713 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-22 11:49:16] 2024-06-22 09:49:02,714 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 11:49:16] 2024-06-22 09:49:02,714 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 11:49:16] 2024-06-22 09:49:02,714 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 11:49:16] 2024-06-22 09:49:02,773 | INFO     | all job control threads have been joined
[2024-06-22 11:49:16] 2024-06-22 09:49:02,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 11:49:16] 2024-06-22 09:49:02,957 | INFO     | aborting loop
[2024-06-22 11:49:16] 2024-06-22 09:49:03,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 11:49:16] 2024-06-22 09:49:03,587 | INFO     | all data control threads have been joined
[2024-06-22 11:49:16] 2024-06-22 09:49:03,718 | INFO     | [job] retrieve thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:03,742 | INFO     | all payload control threads have been joined
[2024-06-22 11:49:16] 2024-06-22 09:49:03,778 | INFO     | [job] control thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:03,962 | INFO     | [job] job monitor thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,016 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,121 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,134 | INFO     | [job] validate thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,436 | INFO     | [payload] failed_post thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 11:49:16] 2024-06-22 09:49:04,592 | INFO     | [data] control thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,747 | INFO     | [payload] control thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,886 | INFO     | [payload] validate_post thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:04,984 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:05,020 | INFO     | [data] copytool_in thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:05,129 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:05,523 | INFO     | [job] queue monitor thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:05,547 | INFO     | [data] copytool_out thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:05,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 11:49:16] 2024-06-22 09:49:09,977 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 11:49:16] 2024-06-22 09:49:10,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47000576095296)>', '<ExcThread(monitor, started 47000758470400)>']
[2024-06-22 11:49:16] 2024-06-22 09:49:10,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 11:49:16] 2024-06-22 09:49:10,754 | INFO     | [monitor] control thread has ended
[2024-06-22 11:49:16] 2024-06-22 09:49:15,664 | INFO     | all workflow threads have been joined
[2024-06-22 11:49:16] 2024-06-22 09:49:15,664 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 11:49:16] 2024-06-22 09:49:15,665 | INFO     | traces error code: 0
[2024-06-22 11:49:16] 2024-06-22 09:49:15,665 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 11:49:16] 2024-06-22 09:49:15,770 [wrapper] ==== pilot stdout END ====
[2024-06-22 11:49:16] 2024-06-22 09:49:15,773 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 11:49:16] 2024-06-22 09:49:15,775 [wrapper] pilotpid: 3051670
[2024-06-22 11:49:16] 2024-06-22 09:49:15,777 [wrapper] Pilot exit status: 0
[2024-06-22 11:49:16] 2024-06-22 09:49:15,802 [wrapper] pandaids: 6239585396
[2024-06-22 11:49:16] 2024-06-22 09:49:15,861 [wrapper] cleanup supervisor_pilot  278617 3051671
[2024-06-22 11:49:16] 2024-06-22 09:49:15,863 [wrapper] Test setup, not cleaning
[2024-06-22 11:49:16] 2024-06-22 09:49:15,865 [wrapper] ==== wrapper stdout END ====
[2024-06-22 11:49:16] 2024-06-22 09:49:15,867 [wrapper] ==== wrapper stderr END ====
[2024-06-22 11:49:16] 2024-06-22 09:49:15,870 [wrapper] apfmon messages muted
[2024-06-22 11:49:16]  *** Error codes and diagnostics ***
[2024-06-22 11:49:16]     "exeErrorCode": 0,
[2024-06-22 11:49:16]     "exeErrorDiag": "",
[2024-06-22 11:49:16]     "pilotErrorCode": 0,
[2024-06-22 11:49:16]     "pilotErrorDiag": "",
[2024-06-22 11:49:16]  *** Listing of results directory ***
[2024-06-22 11:49:16] total 887636
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc    469766 Jun 21 11:10 pilot3.tar.gz
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc      5654 Jun 21 11:24 queuedata.json
[2024-06-22 11:49:16] -rwx------ 1 boinc boinc     32308 Jun 21 11:26 runpilot2-wrapper.sh
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc       100 Jun 21 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 11:49:16] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 21:04 run_atlas
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc       105 Jun 21 21:04 job.xml
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc      6454 Jun 21 21:04 init_data.xml
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc 542246165 Jun 21 21:04 EVNT.38776210._000620.pool.root.1
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:04 start_atlas.sh
[2024-06-22 11:49:16] drwxrwx--x 2 boinc boinc      4096 Jun 21 21:04 shared
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc    482532 Jun 21 21:04 input.tar.gz
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc         0 Jun 21 21:04 boinc_lockfile
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc      2646 Jun 21 21:04 pandaJob.out
[2024-06-22 11:49:16] -rw------- 1 boinc boinc       424 Jun 21 21:04 setup.sh.local
[2024-06-22 11:49:16] -rw------- 1 boinc boinc   1025648 Jun 21 21:05 agis_schedconf.cvmfs.json
[2024-06-22 11:49:16] -rw------- 1 boinc boinc   1321363 Jun 21 21:05 cric_ddmendpoints.json
[2024-06-22 11:49:16] drwx------ 4 boinc boinc      4096 Jun 21 21:05 pilot3
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc       533 Jun 22 11:48 boinc_task_state.xml
[2024-06-22 11:49:16] -rw------- 1 boinc boinc 347256738 Jun 22 11:48 HITS.38921013._051308.pool.root.1
[2024-06-22 11:49:16] -rw------- 1 boinc boinc        95 Jun 22 11:48 pilot_heartbeat.json
[2024-06-22 11:49:16] -rw------- 1 boinc boinc      1045 Jun 22 11:48 memory_monitor_summary.json
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc      8192 Jun 22 11:48 boinc_mmap_file
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc        29 Jun 22 11:48 wrapper_checkpoint.txt
[2024-06-22 11:49:16] -rw------- 1 boinc boinc         0 Jun 22 11:48 agis_ddmendpoints.agis.ALL.json
[2024-06-22 11:49:16] -rw------- 1 boinc boinc    808241 Jun 22 11:48 log.38921013._051308.job.log.tgz.1
[2024-06-22 11:49:16] -rw------- 1 boinc boinc      7770 Jun 22 11:48 heartbeat.json
[2024-06-22 11:49:16] -rw------- 1 boinc boinc      4345 Jun 22 11:49 pilotlog.txt
[2024-06-22 11:49:16] -rw------- 1 boinc boinc   7141007 Jun 22 11:49 log.38921013._051308.job.log.1
[2024-06-22 11:49:16] -rw------- 1 boinc boinc       357 Jun 22 11:49 output.list
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc       620 Jun 22 11:49 runtime_log
[2024-06-22 11:49:16] -rw------- 1 boinc boinc   7966720 Jun 22 11:49 result.tar.gz
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc     11410 Jun 22 11:49 runtime_log.err
[2024-06-22 11:49:16] -rw------- 1 boinc boinc       661 Jun 22 11:49 aPbMDmxipe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmVamKDmRXR94n.diag
[2024-06-22 11:49:16] -rw-r--r-- 1 boinc boinc     21376 Jun 22 11:49 stderr.txt
[2024-06-22 11:49:16] HITS file was successfully produced:
[2024-06-22 11:49:16] -rw------- 1 boinc boinc 347256738 Jun 22 11:48 shared/HITS.pool.root.1
[2024-06-22 11:49:16]  *** Contents of shared directory: ***
[2024-06-22 11:49:16] total 876940
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc 542246165 Jun 21 21:04 ATLAS.root_0
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:04 start_atlas.sh
[2024-06-22 11:49:16] -rw-r--r-- 2 boinc boinc    482532 Jun 21 21:04 input.tar.gz
[2024-06-22 11:49:16] -rw------- 1 boinc boinc 347256738 Jun 22 11:48 HITS.pool.root.1
[2024-06-22 11:49:16] -rw------- 1 boinc boinc   7966720 Jun 22 11:49 result.tar.gz
11:49:17 (3047239): run_atlas exited; CPU time 203950.803470
11:49:17 (3047239): called boinc_finish(0)

</stderr_txt>
]]>

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