| Name | CBvLDm4Wpe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmPCrKDmdss3Um_0 |
| Workunit | 223684799 |
| Created | 21 Jun 2024, 9:15:00 UTC |
| Sent | 21 Jun 2024, 14:21:33 UTC |
| Report deadline | 29 Jun 2024, 14:21:33 UTC |
| Received | 21 Jun 2024, 17:35:22 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10773292 |
| Run time | 3 hours 7 min 59 sec |
| CPU time | 5 hours 9 min 32 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 40.12 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.36 GB |
| Peak swap size | 3.14 GB |
| Peak disk usage | 1.26 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 10:22:19 (13694): wrapper (7.7.26015): starting 10:22:19 (13694): wrapper: running run_atlas (--nthreads 8) [2024-06-21 10:22:19] Arguments: --nthreads 8 [2024-06-21 10:22:19] Threads: 8 [2024-06-21 10:22:19] Checking for CVMFS [2024-06-21 10:22:19] Probing /cvmfs/atlas.cern.ch... OK [2024-06-21 10:22:20] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-06-21 10:22:20] Running cvmfs_config stat atlas.cern.ch [2024-06-21 10:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-06-21 10:22:21] 2.11.2.0 58123 45496 205668 134131 3 137 12084590 18432000 31312 130560 0 2909752 99.409 3078491 53794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1 [2024-06-21 10:22:21] CVMFS is ok [2024-06-21 10:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-06-21 10:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-06-21 10:22:21] Further information can be found at the LHC@home message board. [2024-06-21 10:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-06-21 10:22:21] Checking for apptainer binary... [2024-06-21 10:22:21] Using apptainer found in PATH at /usr/bin/apptainer [2024-06-21 10:22:21] Running /usr/bin/apptainer --version [2024-06-21 10:22:21] apptainer version 1.3.2-1.el7 [2024-06-21 10:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-06-21 10:22:51] c-211-40.aglt2.org [2024-06-21 10:22:51] apptainer works [2024-06-21 10:22:51] Set ATHENA_PROC_NUMBER=8 [2024-06-21 10:22:51] Set ATHENA_CORE_NUMBER=8 [2024-06-21 10:22:51] Starting ATLAS job with PandaID=6239585350 [2024-06-21 10:22:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-06-21 13:30:14] *** The last 200 lines of the pilot log: *** [2024-06-21 13:30:14] user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2098, in remove_redundant_files [2024-06-21 13:30:14] list_work_dir(workdir) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2044, in list_work_dir [2024-06-21 13:30:14] _, stdout, stderr = execute(cmd) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-06-21 13:30:14] process = subprocess.Popen(exe, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-21 13:30:14] self._execute_child(args, executable, preexec_fn, close_fds, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-21 13:30:14] raise child_exception_type(errno_num, err_msg, err_filename) [2024-06-21 13:30:14] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-21 13:30:14] [2024-06-21 13:30:14] None [2024-06-21 13:30:14] exception has been put in bucket queue belonging to thread 'copytool_out' [2024-06-21 13:30:14] setting graceful stop in 10 s since there is no point in continuing [2024-06-21 13:30:14] 2024-06-21 17:27:31,220 | INFO | monitor loop #735: job 0:6239585350 is in state 'failed' [2024-06-21 13:30:14] 2024-06-21 17:27:31,220 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-06-21 13:30:14] 2024-06-21 17:27:32,096 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-21 13:30:14] 2024-06-21 17:27:33,728 | INFO | monitor loop #736: job 0:6239585350 is in state 'failed' [2024-06-21 13:30:14] 2024-06-21 17:27:33,728 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-06-21 13:30:14] 2024-06-21 17:27:36,233 | INFO | monitor loop #737: job 0:6239585350 is in state 'failed' [2024-06-21 13:30:14] 2024-06-21 17:27:36,233 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-06-21 13:30:14] 2024-06-21 17:27:38,739 | INFO | monitor loop #738: job 0:6239585350 is in state 'failed' [2024-06-21 13:30:14] 2024-06-21 17:27:38,739 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-06-21 13:30:14] 2024-06-21 17:27:41,151 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-06-21 13:30:14] 2024-06-21 17:27:41,159 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-06-21 13:30:14] 2024-06-21 17:27:41,245 | INFO | monitor loop #739: job 0:6239585350 is in state 'failed' [2024-06-21 13:30:14] 2024-06-21 17:27:41,246 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-06-21 13:30:14] 2024-06-21 17:27:41,246 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-06-21 13:30:14] 2024-06-21 17:27:41,246 | INFO | will abort loop [2024-06-21 13:30:14] 2024-06-21 17:27:41,477 | INFO | all payload control threads have been joined [2024-06-21 13:30:14] 2024-06-21 17:27:41,876 | INFO | found 1 job(s) in 20 queues [2024-06-21 13:30:14] 2024-06-21 17:27:41,876 | INFO | aborting job 6239585350 [2024-06-21 13:30:14] 2024-06-21 17:27:41,969 | INFO | all data control threads have been joined [2024-06-21 13:30:14] 2024-06-21 17:27:42,240 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-06-21 13:30:14] 2024-06-21 17:27:42,240 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-06-21 13:30:14] 2024-06-21 17:27:42,252 | INFO | [job] job monitor thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,381 | INFO | [job] validate thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,483 | INFO | [payload] control thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,521 | INFO | all job control threads have been joined [2024-06-21 13:30:14] 2024-06-21 17:27:42,808 | INFO | [job] create_data_payload thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,812 | INFO | [payload] validate_pre thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,824 | INFO | [data] copytool_in thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,843 | INFO | [job] retrieve thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:42,974 | INFO | [data] control thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:43,213 | INFO | [payload] validate_post thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:43,245 | INFO | [payload] run_realtimelog thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:43,527 | INFO | [job] control thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:43,600 | INFO | [payload] failed_post thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:43,842 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-06-21 13:30:14] 2024-06-21 17:27:45,657 | INFO | [payload] execute_payloads thread has finished [2024-06-21 13:30:14] 2024-06-21 17:27:47,851 | INFO | [data] queue_monitor thread has finished [2024-06-21 13:30:14] 2024-06-21 17:28:02,263 | INFO | job 6239585350 has state=failed [2024-06-21 13:30:14] 2024-06-21 17:28:02,263 | INFO | preparing for final server update for job 6239585350 in state='failed' [2024-06-21 13:30:14] 2024-06-21 17:28:02,372 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-06-21 13:30:14] 2024-06-21 17:28:02,372 | INFO | [monitor] control thread has ended [2024-06-21 13:30:14] 2024-06-21 17:28:03,643 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:05,655 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:07,679 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:09,705 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:11,719 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:13,731 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:15,744 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:17,755 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:19,772 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:21,785 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:23,797 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:25,808 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:27,821 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:29,831 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:31,842 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:33,855 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:35,867 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:37,878 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:39,889 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:41,900 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:43,912 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:45,924 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:47,935 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:49,949 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:51,966 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:53,979 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:55,992 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:28:58,002 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:00,013 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:02,028 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:04,040 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:06,051 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:08,063 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:10,073 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:12,085 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:14,096 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:16,108 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:18,121 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:20,134 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:22,145 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:24,155 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:26,165 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:28,177 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:30,188 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:32,202 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:34,211 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:36,220 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:38,231 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:40,242 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:42,248 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:44,256 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:46,267 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:48,278 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:50,288 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:52,298 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:54,309 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:56,321 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:29:57,468 | INFO | proceeding with final server update [2024-06-21 13:30:14] 2024-06-21 17:29:57,468 | INFO | this job has now completed (state=failed) [2024-06-21 13:30:14] 2024-06-21 17:29:57,469 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-06-21 13:30:14] 2024-06-21 17:29:57,469 | INFO | job 6239585350 has failed - writing final server update [2024-06-21 13:30:14] 2024-06-21 17:29:57,469 | WARNING | making sure that job.state is set to failed since a pilot error code is set [2024-06-21 13:30:14] 2024-06-21 17:29:57,469 | INFO | payload/TRF did not report the number of read events [2024-06-21 13:30:14] 2024-06-21 17:29:57,472 | WARNING | command=lscpu does not exist - cannot check number of available cores [2024-06-21 13:30:14] 2024-06-21 17:29:57,472 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run [2024-06-21 13:30:14] self._target(**self.kwargs) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2566, in queue_monitor [2024-06-21 13:30:14] update_server(job, args) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2615, in update_server [2024-06-21 13:30:14] send_state(job, args, job.state, metadata=metadata) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 418, in send_state [2024-06-21 13:30:14] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 749, in get_data_structure [2024-06-21 13:30:14] instruction_sets = has_instruction_sets(['AVX2']) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/util/auxiliary.py", line 520, in has_instruction_sets [2024-06-21 13:30:14] exit_code, stdout, stderr = execute(cmd) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-06-21 13:30:14] process = subprocess.Popen(exe, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-21 13:30:14] self._execute_child(args, executable, preexec_fn, close_fds, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-21 13:30:14] raise child_exception_type(errno_num, err_msg, err_filename) [2024-06-21 13:30:14] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f4369d438c0>) [2024-06-21 13:30:14] Traceback (most recent call last): [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run [2024-06-21 13:30:14] self._target(**self.kwargs) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2566, in queue_monitor [2024-06-21 13:30:14] update_server(job, args) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2615, in update_server [2024-06-21 13:30:14] send_state(job, args, job.state, metadata=metadata) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 418, in send_state [2024-06-21 13:30:14] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 749, in get_data_structure [2024-06-21 13:30:14] instruction_sets = has_instruction_sets(['AVX2']) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/util/auxiliary.py", line 520, in has_instruction_sets [2024-06-21 13:30:14] exit_code, stdout, stderr = execute(cmd) [2024-06-21 13:30:14] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-06-21 13:30:14] process = subprocess.Popen(exe, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-06-21 13:30:14] self._execute_child(args, executable, preexec_fn, close_fds, [2024-06-21 13:30:14] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-06-21 13:30:14] raise child_exception_type(errno_num, err_msg, err_filename) [2024-06-21 13:30:14] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-06-21 13:30:14] [2024-06-21 13:30:14] None [2024-06-21 13:30:14] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-06-21 13:30:14] setting graceful stop in 10 s since there is no point in continuing [2024-06-21 13:30:14] 2024-06-21 17:29:58,331 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:30:00,339 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:30:02,349 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:30:04,360 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:30:06,371 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139927678478144)>', '<ExcThread(queue_monitor, started 139926930708224)>'] [2024-06-21 13:30:14] 2024-06-21 17:30:08,382 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139927678478144)>']) [2024-06-21 13:30:14] 2024-06-21 17:30:13,405 | INFO | all workflow threads have been joined [2024-06-21 13:30:14] 2024-06-21 17:30:13,406 | INFO | end of generic workflow (traces error code: 0) [2024-06-21 13:30:14] 2024-06-21 17:30:13,406 | INFO | traces error code: 0 [2024-06-21 13:30:14] 2024-06-21 17:30:13,406 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] ==== pilot stdout END ==== [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] ==== wrapper stdout RESUME ==== [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] pilotpid: 28279 [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] Pilot exit status: 0 [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 949: xargs: command not found [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] pandaids: [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] No supervise_pilot CHILD process found [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] Test setup, not cleaning [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] ==== wrapper stdout END ==== [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] ==== wrapper stderr END ==== [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-06-21 13:30:14] apfmon messages muted [2024-06-21 13:30:14] *** Error codes and diagnostics *** [2024-06-21 13:30:14] *** Listing of results directory *** [2024-06-21 13:30:14] total 629108 [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 469766 Jun 21 05:10 pilot3.tar.gz [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 5654 Jun 21 05:13 queuedata.json [2024-06-21 13:30:14] -rwx------ 1 boincer umatlas 32308 Jun 21 05:14 runpilot2-wrapper.sh [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 100 Jun 21 10:22 wrapper_26015_x86_64-pc-linux-gnu [2024-06-21 13:30:14] -rwxr-xr-x 1 boincer umatlas 7986 Jun 21 10:22 run_atlas [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 105 Jun 21 10:22 job.xml [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 639002895 Jun 21 10:22 EVNT.38776170._000956.pool.root.1 [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 17537 Jun 21 10:22 start_atlas.sh [2024-06-21 13:30:14] drwxrwx--x 2 boincer umatlas 4096 Jun 21 10:22 shared [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 482527 Jun 21 10:22 input.tar.gz [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 0 Jun 21 10:22 boinc_lockfile [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 2617 Jun 21 10:22 pandaJob.out [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 467 Jun 21 10:23 setup.sh.local [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 1022991 Jun 21 10:25 agis_schedconf.cvmfs.json [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 0 Jun 21 10:25 agis_ddmendpoints.agis.ALL.json [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 1321251 Jun 21 10:25 cric_ddmendpoints.json [2024-06-21 13:30:14] drwx------ 4 boincer umatlas 4096 Jun 21 10:26 pilot3 [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 899 Jun 21 13:02 heartbeat.json [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 95 Jun 21 13:26 pilot_heartbeat.json [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 531 Jun 21 13:27 boinc_task_state.xml [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 1076 Jun 21 13:27 memory_monitor_summary.json [2024-06-21 13:30:14] drwxrwx--- 2 boincer umatlas 4096 Jun 21 13:27 PanDA_Pilot-6239585350 [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 6339 Jun 21 13:29 init_data.xml [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 838535 Jun 21 13:30 pilotlog.txt [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 860302 Jun 21 13:30 log.38920987._059719.job.log.1 [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 428 Jun 21 13:30 runtime_log [2024-06-21 13:30:14] -rw------- 1 boincer umatlas 631 Jun 21 13:30 CBvLDm4Wpe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmPCrKDmdss3Um.diag [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 28 Jun 21 13:30 wrapper_checkpoint.txt [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 8192 Jun 21 13:30 boinc_mmap_file [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 11694 Jun 21 13:30 runtime_log.err [2024-06-21 13:30:14] -rw-r--r-- 1 boincer umatlas 28289 Jun 21 13:30 stderr.txt [2024-06-21 13:30:14] No HITS result produced [2024-06-21 13:30:14] *** Contents of shared directory: *** [2024-06-21 13:30:14] total 624524 [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 639002895 Jun 21 10:22 ATLAS.root_0 [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 17537 Jun 21 10:22 start_atlas.sh [2024-06-21 13:30:14] -rw-r--r-- 2 boincer umatlas 482527 Jun 21 10:22 input.tar.gz 13:30:15 (13694): run_atlas exited; CPU time 18075.572034 13:30:15 (13694): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>CBvLDm4Wpe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmPCrKDmdss3Um_0_r1861454125_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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