Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-27 06:34:42 (12088): Detected: vboxwrapper 26206
2024-06-27 06:34:42 (12088): Detected: BOINC client v7.22.2
2024-06-27 06:34:43 (12088): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-06-27 06:34:43 (12088): Successfully copied 'init_data.xml' to the shared directory.
2024-06-27 06:34:43 (12088): Create VM. (boinc_7b5520da65abf30f, slot#0)
2024-06-27 06:34:44 (12088): Setting Memory Size for VM. (4800MB)
2024-06-27 06:34:44 (12088): Setting CPU Count for VM. (8)
2024-06-27 06:34:45 (12088): Setting Chipset Options for VM.
2024-06-27 06:34:45 (12088): Setting Graphics Controller Options for VM.
2024-06-27 06:34:45 (12088): Setting Boot Options for VM.
2024-06-27 06:34:45 (12088): Setting Network Configuration for NAT.
2024-06-27 06:34:46 (12088): Enabling VM Network Access.
2024-06-27 06:34:46 (12088): Disabling USB Support for VM.
2024-06-27 06:34:46 (12088): Disabling COM Port Support for VM.
2024-06-27 06:34:46 (12088): Disabling LPT Port Support for VM.
2024-06-27 06:34:47 (12088): Disabling Audio Support for VM.
2024-06-27 06:34:47 (12088): Disabling Clipboard Support for VM.
2024-06-27 06:34:47 (12088): Disabling Drag and Drop Support for VM.
2024-06-27 06:34:47 (12088): Adding storage controller(s) to VM.
2024-06-27 06:34:48 (12088): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-27 06:34:51 (12088): Adding VirtualBox Guest Additions to VM.
2024-06-27 06:34:51 (12088): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-27 06:34:51 (12088): forwarding host port 60998 to guest port 80
2024-06-27 06:34:51 (12088): Enabling remote desktop for VM.
2024-06-27 06:34:52 (12088): Required extension pack not installed, remote desktop not enabled.
2024-06-27 06:34:52 (12088): Enabling shared directory for VM.
2024-06-27 06:34:52 (12088): Starting VM using VBoxManage interface. (boinc_7b5520da65abf30f, slot#0)
2024-06-27 06:34:57 (12088): Successfully started VM. (PID = '14092')
2024-06-27 06:34:57 (12088): Reporting VM Process ID to BOINC.
2024-06-27 06:34:57 (12088): Guest Log: BIOS: VirtualBox 7.0.8
2024-06-27 06:34:57 (12088): Guest Log: CPUID EDX: 0x178bfbff
2024-06-27 06:34:57 (12088): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-27 06:34:57 (12088): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-27 06:34:57 (12088): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-27 06:34:57 (12088): Detected: Web Application Enabled (http://localhost:60998)
2024-06-27 06:34:57 (12088): Preference change detected
2024-06-27 06:34:57 (12088): Setting CPU throttle for VM. (85%)
2024-06-27 06:34:57 (12088): Setting network throttle for VM. (1000KB)
2024-06-27 06:34:58 (12088): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-27 06:34:59 (12088): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-27 06:34:59 (12088): Guest Log: BIOS: Booting from Hard Disk...
2024-06-27 06:35:02 (12088): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-27 06:35:02 (12088): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-27 06:35:02 (12088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-27 06:36:11 (12088): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-27 06:36:11 (12088): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-27 06:36:17 (12088): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000069 main     Log opened 2024-06-27T06:36:16.019807000Z
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000142 main     OS Product: Linux
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000166 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000185 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000203 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000203 main     Process ID: 1364
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000204 main     Package type: LINUX_64BITS_GENERIC
2024-06-27 06:36:17 (12088): Guest Log: 00:00:00.000639 main     5.2.32 r132073 started. Verbose level = 0
2024-06-27 06:36:17 (12088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-27 06:36:17 (12088): Guest Log: [INFO] Mounting shared directory
2024-06-27 06:36:17 (12088): Guest Log: [INFO] Checking for init_data.xml
2024-06-27 06:36:24 (12088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-27 06:36:24 (12088): Guest Log: [INFO] Detected branch: prod
2024-06-27 06:36:24 (12088): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-27 06:36:24 (12088): Guest Log: Copying input files
2024-06-27 06:36:27 (12088): Guest Log: 00:00:10.031216 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 794 002 280 000ns (GuestNow=1 719 459 382 018 821 000 ns GuestLast=1 719 470 176 021 101 000 ns fSetTimeLastLoop=true )
2024-06-27 06:36:28 (12088): Guest Log: Copied input files into RunAtlas.
2024-06-27 06:36:28 (12088): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-27 06:36:28 (12088): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-27 06:36:28 (12088): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-27 06:36:28 (12088): Guest Log: Further information can be found at the LHC@home message board.
2024-06-27 06:38:09 (12088): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-27 06:38:09 (12088): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-27 06:38:09 (12088): Guest Log: 2.6.3.0 1642 1 30136 134342 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-27 06:38:11 (12088): Guest Log: copied the webapp to /var/www
2024-06-27 06:38:11 (12088): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-27 06:38:11 (12088): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-27 06:38:12 (12088): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-27 06:38:12 (12088): Guest Log:  *** Starting ATLAS job. (PandaID=6239356815 taskID=38921007) ***
2024-06-27 08:14:59 (12088): Status Report: Elapsed Time: '6000.000000'
2024-06-27 08:14:59 (12088): Status Report: CPU Time: '31742.578125'
2024-06-27 09:55:01 (12088): Status Report: Elapsed Time: '12000.000000'
2024-06-27 09:55:01 (12088): Status Report: CPU Time: '74899.546875'
2024-06-27 11:35:03 (12088): Status Report: Elapsed Time: '18000.000000'
2024-06-27 11:35:03 (12088): Status Report: CPU Time: '118055.875000'
2024-06-27 11:48:10 (12088): Guest Log:  *** Job finished ***
2024-06-27 11:48:10 (12088): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:43,957 | INFO     | [data] queue_monitor thread has finished
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:50,590 | INFO     | job.realtimelogging is not enabled
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:51,593 | INFO     | [payload] run_realtimelog thread has finished
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:52,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949816772416)>', '<ExcThread(monitor, started 139949009524480)>']
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:53,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:53,678 | INFO     | [monitor] control thread has ended
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,805 | INFO     | all workflow threads have been joined
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,806 | INFO     | end of generic workflow (traces error code: 0)
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,806 | INFO     | traces error code: 0
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,912 [wrapper] ==== pilot stdout END ====
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,914 [wrapper] ==== wrapper stdout RESUME ====
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,916 [wrapper] pilotpid: 6606
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:57,918 [wrapper] Pilot exit status: 0
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,285 [wrapper] pandaids: 6239356815
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,301 [wrapper] cleanup supervisor_pilot 20900 6607
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,303 [wrapper] Test setup, not cleaning
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,305 [wrapper] ==== wrapper stdout END ====
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,307 [wrapper] ==== wrapper stderr END ====
2024-06-27 11:48:10 (12088): Guest Log: 2024-06-27 08:47:58,312 [wrapper] apfmon messages muted
2024-06-27 11:48:10 (12088): Guest Log:  *** Error codes and diagnostics ***
2024-06-27 11:48:10 (12088): Guest Log:     "exeErrorCode": 0,
2024-06-27 11:48:10 (12088): Guest Log:     "exeErrorDiag": "",
2024-06-27 11:48:10 (12088): Guest Log:     "pilotErrorCode": 0,
2024-06-27 11:48:10 (12088): Guest Log:     "pilotErrorDiag": "",
2024-06-27 11:48:10 (12088): Guest Log:  *** Listing of results directory ***
2024-06-27 11:48:10 (12088): Guest Log: total 355208
2024-06-27 11:48:10 (12088): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 21 05:31 pilot3.tar.gz
2024-06-27 11:48:10 (12088): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 21 05:43 queuedata.json
2024-06-27 11:48:10 (12088): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 21 05:44 runpilot2-wrapper.sh
2024-06-27 11:48:10 (12088): Guest Log: -rwxr-xr-x. 1 atlas atlas    482541 Jun 27 03:36 input.tar.gz
2024-06-27 11:48:10 (12088): Guest Log: -rwxr-xr-x. 1 atlas atlas      9263 Jun 27 03:36 init_data.xml
2024-06-27 11:48:10 (12088): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 27 03:36 start_atlas.sh
2024-06-27 11:48:10 (12088): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 27 03:36 EVNT.38776201._000941.pool.root.1 -> /data/./ATLAS.root_0
2024-06-27 11:48:10 (12088): Guest Log: -rw-r--r--. 1 atlas atlas      2629 Jun 27 03:38 pandaJob.out
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas       424 Jun 27 03:38 setup.sh.local
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas   1036279 Jun 27 03:40 agis_schedconf.cvmfs.json
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 27 03:40 cric_ddmendpoints.json
2024-06-27 11:48:10 (12088): Guest Log: drwx------. 4 atlas atlas      4096 Jun 27 03:40 pilot3
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas 356191749 Jun 27 08:46 HITS.38921007._052272.pool.root.1
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas        95 Jun 27 08:47 pilot_heartbeat.json
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas      1028 Jun 27 08:47 memory_monitor_summary.json
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas         0 Jun 27 08:47 agis_ddmendpoints.agis.ALL.json
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas    422282 Jun 27 08:47 log.38921007._052272.job.log.tgz.1
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas      7714 Jun 27 08:47 heartbeat.json
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas      4652 Jun 27 08:47 pilotlog.txt
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas   1611676 Jun 27 08:47 log.38921007._052272.job.log.1
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas       357 Jun 27 08:47 output.list
2024-06-27 11:48:10 (12088): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 27 08:47 runtime_log
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas   2048000 Jun 27 08:47 result.tar.gz
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas       639 Jun 27 08:47 uSqLDmmFme5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmJOmKDmZjQsfm.diag
2024-06-27 11:48:10 (12088): Guest Log: -rw-r--r--. 1 atlas atlas     10901 Jun 27 08:47 runtime_log.err
2024-06-27 11:48:10 (12088): Guest Log: Looking for outputfile HITS.38921007._052272.pool.root.1
2024-06-27 11:48:10 (12088): Guest Log: HITS file was successfully produced
2024-06-27 11:48:10 (12088): Guest Log: -rw-------. 1 atlas atlas 356191749 Jun 27 08:46 /home/atlas/RunAtlas/HITS.38921007._052272.pool.root.1
2024-06-27 11:48:11 (12088): Guest Log: Successfully finished the ATLAS job!
2024-06-27 11:48:11 (12088): Guest Log: Copying the results back to the shared directory!
2024-06-27 11:48:11 (12088): Guest Log:  *** Contents of shared directory: ***
2024-06-27 11:48:11 (12088): Guest Log: total 921492
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root 584847587 Jun 27 03:34 ATLAS.root_0
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root 356191749 Jun 27  2024 HITS.pool.root.1
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root      9263 Jun 27 03:34 init_data.xml
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root    482541 Jun 21 10:58 input.tar.gz
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root   2048000 Jun 27  2024 result.tar.gz
2024-06-27 11:48:11 (12088): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 21 10:58 start_atlas.sh
2024-06-27 11:48:11 (12088): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-27 11:48:11 (12088): VM Completion File Detected.
2024-06-27 11:48:11 (12088): Powering off VM.
2024-06-27 11:48:12 (12088): Successfully stopped VM.
2024-06-27 11:48:12 (12088): Deregistering VM. (boinc_7b5520da65abf30f, slot#0)
2024-06-27 11:48:12 (12088): Removing network bandwidth throttle group from VM.
2024-06-27 11:48:12 (12088): Removing VM from VirtualBox.
11:48:17 (12088): called boinc_finish(0)

</stderr_txt>
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