Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:09:27 (677885): wrapper (7.7.26015): starting
20:09:27 (677885): wrapper: running run_atlas (--nthreads 8)
[2024-06-20 20:09:27] Arguments: --nthreads 8
[2024-06-20 20:09:27] Threads: 8
[2024-06-20 20:09:27] Checking for CVMFS
[2024-06-20 20:09:28] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-20 20:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-20 20:09:28] Running cvmfs_config stat atlas.cern.ch
[2024-06-20 20:09:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-20 20:09:30] 2.11.2.0 2197843 11674 77708 134106 0 189 18259293 18432001 4571 130560 2 37349302 99.985 2649030 23457 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-06-20 20:09:30] CVMFS is ok
[2024-06-20 20:09:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-20 20:09:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-20 20:09:30] Further information can be found at the LHC@home message board.
[2024-06-20 20:09:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-20 20:09:30] Checking for apptainer binary...
[2024-06-20 20:09:30] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-20 20:09:30] Running /usr/bin/apptainer --version
[2024-06-20 20:09:30] apptainer version 1.2.4-1.el7
[2024-06-20 20:09:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-20 20:09:31] gc-9-36.aglt2.org
[2024-06-20 20:09:31] apptainer works
[2024-06-20 20:09:31] Set ATHENA_PROC_NUMBER=8
[2024-06-20 20:09:31] Set ATHENA_CORE_NUMBER=8
[2024-06-20 20:09:31] Starting ATLAS job with PandaID=6239014858
[2024-06-20 20:09:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 11:01:22]  *** The last 200 lines of the pilot log: ***
[2024-06-21 11:01:23] 2024-06-21 15:01:06,231 | INFO     | fitting pss+swap vs Time
[2024-06-21 11:01:23] 2024-06-21 15:01:06,232 | INFO     | model: linear, x: [1718928853.0, 1718928914.0, 1718928975.0, 1718929036.0, 1718929097.0, 1718929158.0, 1718929219.0, 1718929280.0, 1718929341.0, 1718929402.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,232 | INFO     | sum of square deviations: 205604855683.11954
[2024-06-21 11:01:23] 2024-06-21 15:01:06,257 | INFO     | sum of deviations: 521208544469.5505
[2024-06-21 11:01:23] 2024-06-21 15:01:06,258 | INFO     | mean x: 1718955418.8990827
[2024-06-21 11:01:23] 2024-06-21 15:01:06,258 | INFO     | mean y: 2522155.4380733944
[2024-06-21 11:01:23] 2024-06-21 15:01:06,258 | INFO     | -- intersect: -4355031798.799569
[2024-06-21 11:01:23] 2024-06-21 15:01:06,258 | INFO     | intersect: -4355031798.799569
[2024-06-21 11:01:23] 2024-06-21 15:01:06,259 | INFO     | chi2: 6.35310037737684
[2024-06-21 11:01:23] 2024-06-21 15:01:06,260 | INFO     | model: linear, x: [1718928853.0, 1718928914.0, 1718928975.0, 1718929036.0, 1718929097.0, 1718929158.0, 1718929219.0, 1718929280.0, 1718929341.0, 1718929402.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,260 | INFO     | sum of square deviations: 202088467982.31836
[2024-06-21 11:01:23] 2024-06-21 15:01:06,279 | INFO     | sum of deviations: 578219712355.4017
[2024-06-21 11:01:23] 2024-06-21 15:01:06,279 | INFO     | mean x: 1718955266.401384
[2024-06-21 11:01:23] 2024-06-21 15:01:06,279 | INFO     | mean y: 2524615.665513264
[2024-06-21 11:01:23] 2024-06-21 15:01:06,279 | INFO     | -- intersect: -4915785813.494527
[2024-06-21 11:01:23] 2024-06-21 15:01:06,279 | INFO     | intersect: -4915785813.494527
[2024-06-21 11:01:23] 2024-06-21 15:01:06,280 | INFO     | chi2: 5.550059338242639
[2024-06-21 11:01:23] 2024-06-21 15:01:06,280 | INFO     | current chi2=5.550059338242639 (change=12.640144046736632 %)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,280 | INFO     | right removable region: 866
[2024-06-21 11:01:23] 2024-06-21 15:01:06,281 | INFO     | model: linear, x: [1718929158.0, 1718929219.0, 1718929280.0, 1718929341.0, 1718929402.0, 1718929463.0, 1718929524.0, 1718929585.0, 1718929646.0, 1718929707.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,281 | INFO     | sum of square deviations: 202088255702.31848
[2024-06-21 11:01:23] 2024-06-21 15:01:06,300 | INFO     | sum of deviations: 242881242315.44644
[2024-06-21 11:01:23] 2024-06-21 15:01:06,300 | INFO     | mean x: 1718955571.401384
[2024-06-21 11:01:23] 2024-06-21 15:01:06,300 | INFO     | mean y: 2534219.461361015
[2024-06-21 11:01:23] 2024-06-21 15:01:06,300 | INFO     | -- intersect: -2063405056.5053642
[2024-06-21 11:01:23] 2024-06-21 15:01:06,300 | INFO     | intersect: -2063405056.5053642
[2024-06-21 11:01:23] 2024-06-21 15:01:06,301 | INFO     | chi2: 2.7280885498834304
[2024-06-21 11:01:23] 2024-06-21 15:01:06,301 | INFO     | current chi2=2.7280885498834304 (change=57.05894149574506 %)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,302 | INFO     | model: linear, x: [1718929463.0, 1718929524.0, 1718929585.0, 1718929646.0, 1718929707.0, 1718929768.0, 1718929829.0, 1718929890.0, 1718929951.0, 1718930012.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,303 | INFO     | sum of square deviations: 198611982059.0075
[2024-06-21 11:01:23] 2024-06-21 15:01:06,324 | INFO     | sum of deviations: 55923337388.64164
[2024-06-21 11:01:23] 2024-06-21 15:01:06,324 | INFO     | mean x: 1718955723.9037123
[2024-06-21 11:01:23] 2024-06-21 15:01:06,324 | INFO     | mean y: 2542416.3932714616
[2024-06-21 11:01:23] 2024-06-21 15:01:06,324 | INFO     | -- intersect: -481465345.41157246
[2024-06-21 11:01:23] 2024-06-21 15:01:06,324 | INFO     | intersect: -481465345.41157246
[2024-06-21 11:01:23] 2024-06-21 15:01:06,325 | INFO     | chi2: 1.0942614700390685
[2024-06-21 11:01:23] 2024-06-21 15:01:06,325 | INFO     | current chi2=1.0942614700390685 (change=59.889078010835625 %)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,326 | INFO     | model: linear, x: [1718929768.0, 1718929829.0, 1718929890.0, 1718929951.0, 1718930012.0, 1718930073.0, 1718930134.0, 1718930195.0, 1718930256.0, 1718930317.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,326 | INFO     | sum of square deviations: 195175802190.68857
[2024-06-21 11:01:23] 2024-06-21 15:01:06,342 | INFO     | sum of deviations: -2551327629.6079407
[2024-06-21 11:01:23] 2024-06-21 15:01:06,342 | INFO     | mean x: 1718955876.4060676
[2024-06-21 11:01:23] 2024-06-21 15:01:06,342 | INFO     | mean y: 2545009.309218203
[2024-06-21 11:01:23] 2024-06-21 15:01:06,342 | INFO     | -- intersect: 25015108.43178741
[2024-06-21 11:01:23] 2024-06-21 15:01:06,342 | INFO     | intersect: 25015108.43178741
[2024-06-21 11:01:23] 2024-06-21 15:01:06,343 | INFO     | chi2: 0.9306659203449709
[2024-06-21 11:01:23] 2024-06-21 15:01:06,343 | INFO     | current chi2=0.9306659203449709 (change=14.950316187981722 %)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,343 | INFO     | left removable region: 30
[2024-06-21 11:01:23] 2024-06-21 15:01:06,344 | INFO     | model: linear, x: [1718930683.0, 1718930744.0, 1718930805.0, 1718930866.0, 1718930927.0, 1718930988.0, 1718931049.0, 1718931110.0, 1718931171.0, 1718931232.0, 1718
[2024-06-21 11:01:23] 2024-06-21 15:01:06,344 | INFO     | sum of square deviations: 181176728210.97012
[2024-06-21 11:01:23] 2024-06-21 15:01:06,362 | INFO     | sum of deviations: 10708153842.455751
[2024-06-21 11:01:23] 2024-06-21 15:01:06,362 | INFO     | mean x: 1718956150.9150717
[2024-06-21 11:01:23] 2024-06-21 15:01:06,362 | INFO     | mean y: 2549705.65430622
[2024-06-21 11:01:23] 2024-06-21 15:01:06,362 | INFO     | -- intersect: -99046382.8400198
[2024-06-21 11:01:23] 2024-06-21 15:01:06,362 | INFO     | intersect: -99046382.8400198
[2024-06-21 11:01:23] 2024-06-21 15:01:06,363 | INFO     | chi2: 0.02170719530524563
[2024-06-21 11:01:23] 2024-06-21 15:01:06,363 | INFO     | -- intersect: -99046382.8400198
[2024-06-21 11:01:23] 2024-06-21 15:01:06,363 | INFO     | current memory leak: 0.06 B/s (using 836 data points, chi2=0.02)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,364 | INFO     | ..............................
[2024-06-21 11:01:23] 2024-06-21 15:01:06,364 | INFO     | . Timing measurements:
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . get job = 0 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . initial setup = 3 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . payload setup = 62 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . stage-in = 0 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . payload execution = 53209 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . stage-out = 3 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | . log creation = 0 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,365 | INFO     | ..............................
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | 
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | job summary report
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | --------------------------------------------------
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | PanDA job id: 6239014858
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | task id: 38921013
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | errors: (none)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | pilot state: finished 
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | transexitcode: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:06,455 | INFO     | exeerrorcode: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | exeerrordiag: 
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | exitcode: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | exitmsg: OK
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | cpuconsumptiontime: 140975 s
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | nevents: 400
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | neventsw: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | pid: 702430
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | pgrp: 702430
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | corecount: 8
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | event service: False
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | sizes: {0: 2386917, 1: 2387116, 2: 2387116, 12: 2387144, 23: 2387172, 34: 2387200, 39: 2387562, 45: 2387590, 53272: 2435242, 53273: 2435241, 53276: 2444259, 53278:
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | --------------------------------------------------
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | 
[2024-06-21 11:01:23] 2024-06-21 15:01:06,456 | INFO     | executing command: ls -lF /data/boinchome/slots/0
[2024-06-21 11:01:23] 2024-06-21 15:01:06,647 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | job 6239014858 has completed (purged errors)
[2024-06-21 11:01:23] 2024-06-21 15:01:06,649 | INFO     | overall cleanup function is called
[2024-06-21 11:01:23] 2024-06-21 15:01:07,658 | INFO     | --- collectZombieJob: --- 10, [702430]
[2024-06-21 11:01:23] 2024-06-21 15:01:07,658 | INFO     | zombie collector waiting for pid 702430
[2024-06-21 11:01:23] 2024-06-21 15:01:07,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 11:01:23] 2024-06-21 15:01:08,664 | INFO     | collected zombie processes
[2024-06-21 11:01:23] 2024-06-21 15:01:08,664 | INFO     | will now attempt to kill all subprocesses of pid=702430
[2024-06-21 11:01:23] 2024-06-21 15:01:08,898 | INFO     | process IDs to be killed: [702430] (in reverse order)
[2024-06-21 11:01:23] 2024-06-21 15:01:09,262 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 11:01:23] 2024-06-21 15:01:09,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 11:01:23] 2024-06-21 15:01:09,270 | INFO     | did not find any defunct processes belonging to 702430
[2024-06-21 11:01:23] 2024-06-21 15:01:09,276 | INFO     | did not find any defunct processes belonging to 702430
[2024-06-21 11:01:23] 2024-06-21 15:01:09,276 | INFO     | ready for new job
[2024-06-21 11:01:23] 2024-06-21 15:01:09,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 11:01:23] 2024-06-21 15:01:09,281 | INFO     | *************************************
[2024-06-21 11:01:23] 2024-06-21 15:01:09,281 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 11:01:23] 2024-06-21 15:01:09,281 | INFO     | *************************************
[2024-06-21 11:01:23] 2024-06-21 15:01:09,281 | INFO     | 
[2024-06-21 11:01:23] 2024-06-21 15:01:09,284 | INFO     | architecture information:
[2024-06-21 11:01:23] 2024-06-21 15:01:09,286 | INFO     | executing command: cat /etc/os-release
[2024-06-21 11:01:23] 2024-06-21 15:01:09,402 | INFO     | cat /etc/os-release:
[2024-06-21 11:01:23] NAME="CentOS Linux"
[2024-06-21 11:01:23] VERSION="7 (Core)"
[2024-06-21 11:01:23] ID="centos"
[2024-06-21 11:01:23] ID_LIKE="rhel fedora"
[2024-06-21 11:01:23] VERSION_ID="7"
[2024-06-21 11:01:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 11:01:23] ANSI_COLOR="0;31"
[2024-06-21 11:01:23] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 11:01:23] HOME_URL="https://www.centos.org/"
[2024-06-21 11:01:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 11:01:23] 
[2024-06-21 11:01:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 11:01:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 11:01:23] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 11:01:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 11:01:23] 
[2024-06-21 11:01:23] 2024-06-21 15:01:09,402 | INFO     | *************************************
[2024-06-21 11:01:23] 2024-06-21 15:01:09,905 | INFO     | executing command: df -mP /data/boinchome/slots/0
[2024-06-21 11:01:23] 2024-06-21 15:01:09,992 | INFO     | sufficient remaining disk space (906120658944 B)
[2024-06-21 11:01:23] 2024-06-21 15:01:09,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 11:01:23] 2024-06-21 15:01:09,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 11:01:23] 2024-06-21 15:01:09,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 11:01:23] 2024-06-21 15:01:09,993 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-21 11:01:23] 2024-06-21 15:01:09,994 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 11:01:23] 2024-06-21 15:01:09,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 11:01:23] 2024-06-21 15:01:09,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 11:01:23] 2024-06-21 15:01:10,001 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-21 11:01:23] 2024-06-21 15:01:10,001 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-21 11:01:23] 2024-06-21 15:01:10,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 11:01:23] 2024-06-21 15:01:10,001 | INFO     | will abort loop
[2024-06-21 11:01:23] 2024-06-21 15:01:10,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 11:01:23] 2024-06-21 15:01:10,760 | INFO     | all data control threads have been joined
[2024-06-21 11:01:23] 2024-06-21 15:01:10,867 | INFO     | all payload control threads have been joined
[2024-06-21 11:01:23] 2024-06-21 15:01:10,998 | INFO     | all job control threads have been joined
[2024-06-21 11:01:23] 2024-06-21 15:01:11,000 | INFO     | [job] retrieve thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,007 | INFO     | [job] job monitor thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,077 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,078 | INFO     | [job] validate thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,208 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 11:01:23] 2024-06-21 15:01:11,767 | INFO     | [data] control thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:11,873 | INFO     | [payload] control thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,004 | INFO     | [job] control thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,132 | INFO     | [payload] failed_post thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,187 | INFO     | [data] copytool_in thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,211 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,397 | INFO     | [payload] validate_post thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,424 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,474 | INFO     | [job] queue monitor thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:12,653 | INFO     | [data] copytool_out thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:14,002 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 11:01:23] 2024-06-21 15:01:15,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903727773504)>', '<ExcThread(monitor, started 139903283209984)>']
[2024-06-21 11:01:23] 2024-06-21 15:01:16,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 11:01:23] 2024-06-21 15:01:16,029 | INFO     | [monitor] control thread has ended
[2024-06-21 11:01:23] 2024-06-21 15:01:20,695 | INFO     | all workflow threads have been joined
[2024-06-21 11:01:23] 2024-06-21 15:01:20,695 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 11:01:23] 2024-06-21 15:01:20,695 | INFO     | traces error code: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:20,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 11:01:23] 2024-06-21 15:01:21,220 [wrapper] ==== pilot stdout END ====
[2024-06-21 11:01:23] 2024-06-21 15:01:21,253 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 11:01:23] 2024-06-21 15:01:21,281 [wrapper] pilotpid: 687968
[2024-06-21 11:01:23] 2024-06-21 15:01:21,311 [wrapper] Pilot exit status: 0
[2024-06-21 11:01:23] 2024-06-21 15:01:21,430 [wrapper] pandaids: 6239014858
[2024-06-21 11:01:23] 2024-06-21 15:01:21,627 [wrapper] cleanup supervisor_pilot 3965218 687969
[2024-06-21 11:01:23] 2024-06-21 15:01:21,653 [wrapper] Test setup, not cleaning
[2024-06-21 11:01:23] 2024-06-21 15:01:21,679 [wrapper] ==== wrapper stdout END ====
[2024-06-21 11:01:23] 2024-06-21 15:01:21,697 [wrapper] ==== wrapper stderr END ====
[2024-06-21 11:01:23] 2024-06-21 15:01:21,773 [wrapper] apfmon messages muted
[2024-06-21 11:01:23]  *** Error codes and diagnostics ***
[2024-06-21 11:01:23]     "exeErrorCode": 0,
[2024-06-21 11:01:23]     "exeErrorDiag": "",
[2024-06-21 11:01:23]     "pilotErrorCode": 0,
[2024-06-21 11:01:23]     "pilotErrorDiag": "",
[2024-06-21 11:01:23]  *** Listing of results directory ***
[2024-06-21 11:01:23] total 882080
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas    469766 Jun 20 14:32 pilot3.tar.gz
[2024-06-21 11:01:23] -rwx------ 1 boincer umatlas     32308 Jun 20 14:50 runpilot2-wrapper.sh
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas      5654 Jun 20 14:50 queuedata.json
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas       100 Jun 20 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 11:01:23] -rwxr-xr-x 1 boincer umatlas      7986 Jun 20 20:09 run_atlas
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas       105 Jun 20 20:09 job.xml
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas 541165475 Jun 20 20:09 EVNT.38776210._000471.pool.root.1
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas     17537 Jun 20 20:09 start_atlas.sh
[2024-06-21 11:01:23] drwxrwx--x 2 boincer umatlas      4096 Jun 20 20:09 shared
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas    482534 Jun 20 20:09 input.tar.gz
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas         0 Jun 20 20:09 boinc_lockfile
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas      2644 Jun 20 20:09 pandaJob.out
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas       461 Jun 20 20:09 setup.sh.local
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas   1024126 Jun 20 20:11 agis_schedconf.cvmfs.json
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas   1321251 Jun 20 20:11 cric_ddmendpoints.json
[2024-06-21 11:01:23] drwx------ 4 boincer umatlas      4096 Jun 20 20:11 pilot3
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas      9221 Jun 21 10:54 init_data.xml
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas 343361232 Jun 21 10:59 HITS.38921013._050404.pool.root.1
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas       533 Jun 21 10:59 boinc_task_state.xml
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas        95 Jun 21 11:00 pilot_heartbeat.json
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas      1056 Jun 21 11:00 memory_monitor_summary.json
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas         0 Jun 21 11:00 agis_ddmendpoints.agis.ALL.json
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas    841597 Jun 21 11:00 log.38921013._050404.job.log.tgz.1
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas      8192 Jun 21 11:00 boinc_mmap_file
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas        29 Jun 21 11:00 wrapper_checkpoint.txt
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas      7763 Jun 21 11:01 heartbeat.json
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas      4522 Jun 21 11:01 pilotlog.txt
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas   6747385 Jun 21 11:01 log.38921013._050404.job.log.1
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas       357 Jun 21 11:01 output.list
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas       620 Jun 21 11:01 runtime_log
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas   7608320 Jun 21 11:01 result.tar.gz
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas     11382 Jun 21 11:01 runtime_log.err
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas       652 Jun 21 11:01 asQNDmR2be5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmdZXKDmA4Ft5m.diag
[2024-06-21 11:01:23] -rw-r--r-- 1 boincer umatlas     21696 Jun 21 11:01 stderr.txt
[2024-06-21 11:01:23] HITS file was successfully produced:
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas 343361232 Jun 21 10:59 shared/HITS.pool.root.1
[2024-06-21 11:01:23]  *** Contents of shared directory: ***
[2024-06-21 11:01:23] total 871732
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas 541165475 Jun 20 20:09 ATLAS.root_0
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas     17537 Jun 20 20:09 start_atlas.sh
[2024-06-21 11:01:23] -rw-r--r-- 2 boincer umatlas    482534 Jun 20 20:09 input.tar.gz
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas 343361232 Jun 21 10:59 HITS.pool.root.1
[2024-06-21 11:01:23] -rw------- 1 boincer umatlas   7608320 Jun 21 11:01 result.tar.gz
11:01:24 (677885): run_atlas exited; CPU time 140328.743205
11:01:24 (677885): called boinc_finish(0)

</stderr_txt>
]]>

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